Wall clock time and date at job start Mon Mar 30 2020 03:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.33712 * 118.53775 * 89.99936 * 4 3 2 6 6 O 1.21276 * 118.62304 * 358.31280 * 5 4 3 7 7 C 1.50260 * 122.75046 * 178.28746 * 5 4 3 8 8 H 1.08999 * 109.38600 * 257.16975 * 7 5 4 9 9 C 1.50700 * 109.38377 * 137.37881 * 7 5 4 10 10 H 1.08001 * 120.00305 * 0.02562 * 9 7 5 11 11 C 1.37874 * 119.99714 * 179.97438 * 9 7 5 12 12 N 1.31517 * 120.00108 * 179.97438 * 11 9 7 13 13 Si 1.86804 * 120.00243 * 0.02562 * 11 9 7 14 14 H 1.48499 * 109.47531 * 89.99460 * 13 11 9 15 15 H 1.48501 * 109.47042 * 210.00178 * 13 11 9 16 16 H 1.48501 * 109.46703 * 329.99405 * 13 11 9 17 17 N 1.46902 * 109.97869 * 17.22299 * 7 5 4 18 18 C 1.47192 * 110.17168 * 309.70151 * 17 7 5 19 19 C 1.46010 * 118.53099 * 269.72874 * 4 3 2 20 20 C 1.52997 * 109.37813 * 318.33809 * 19 4 3 21 21 C 1.53002 * 109.37572 * 77.99114 * 19 4 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 0.96997 * 120.00089 * 180.02562 * 12 11 9 30 30 H 1.00898 * 110.99860 * 186.33704 * 17 7 5 31 31 H 1.09002 * 109.58868 * 188.77270 * 18 17 7 32 32 H 1.08994 * 109.59506 * 309.07300 * 18 17 7 33 33 H 1.09004 * 109.47058 * 60.00758 * 20 19 4 34 34 H 1.09008 * 109.46860 * 179.97438 * 20 19 4 35 35 H 1.08994 * 109.47329 * 299.99955 * 20 19 4 36 36 H 1.09001 * 109.46736 * 59.99329 * 21 19 4 37 37 H 1.08993 * 109.47229 * 179.97438 * 21 19 4 38 38 H 1.09000 * 109.46973 * 299.99969 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1433 1.4426 -1.1756 6 8 3.4856 1.4115 -2.1940 7 6 5.6413 1.4803 -1.2868 8 1 5.9589 2.4878 -1.5555 9 6 6.0881 0.5139 -2.3534 10 1 5.3573 -0.0680 -2.8953 11 6 7.4299 0.3735 -2.6380 12 7 7.8199 -0.4703 -3.5684 13 14 8.6939 1.3805 -1.7011 14 1 9.1261 0.6326 -0.4932 15 1 9.8689 1.6347 -2.5729 16 1 8.0914 2.6749 -1.2927 17 7 6.2496 1.1055 -0.0033 18 6 5.6529 1.8904 1.0896 19 6 4.2030 1.4483 1.2819 20 6 3.4986 2.4122 2.2388 21 6 4.1818 0.0393 1.8777 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 8.7639 -0.5693 -3.7684 30 1 7.2511 1.2248 -0.0292 31 1 6.2130 1.7210 2.0093 32 1 5.6795 2.9500 0.8354 33 1 2.4681 2.0891 2.3865 34 1 4.0182 2.4174 3.1970 35 1 3.5074 3.4163 1.8148 36 1 4.6784 -0.6510 1.1958 37 1 4.7028 0.0418 2.8350 38 1 3.1493 -0.2768 2.0264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220392846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:42 Heat of formation + Delta-G solvation = -48.576566 kcal Electronic energy + Delta-G solvation = -18792.876365 eV Core-core repulsion = 16055.548669 eV Total energy + Delta-G solvation = -2737.327696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76075 -38.39044 -37.21781 -34.96831 -33.91474 -32.57139 -29.86312 -28.33755 -27.65301 -25.58984 -24.55154 -22.53743 -22.30382 -19.11572 -18.82219 -18.06510 -17.93915 -16.54639 -16.34896 -15.74803 -15.47362 -15.36002 -15.09298 -14.78044 -14.49178 -14.15736 -13.59460 -13.51522 -13.27668 -13.11161 -12.76506 -12.62882 -12.59989 -12.41798 -12.38739 -12.01885 -11.94486 -11.67571 -11.57104 -11.37383 -10.87993 -10.58988 -9.63398 -9.40497 -8.37396 -6.47073 1.20048 1.30593 1.37227 1.72612 2.10516 2.22780 2.84617 3.37309 3.66765 3.75225 4.02666 4.11051 4.13381 4.22579 4.37696 4.45073 4.50606 4.65292 4.66302 4.72120 4.82961 4.87515 4.94009 4.98059 5.05617 5.17118 5.20743 5.24078 5.28349 5.46523 5.55564 5.71562 5.99237 6.13597 6.28549 6.52934 6.65282 7.14236 7.34625 8.80446 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.009136 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.440845 B = 3064.009138 C = 3630.973365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.104 3.896 4 N -0.594 5.594 5 C 0.529 3.471 6 O -0.593 6.593 7 C 0.178 3.822 8 H 0.022 0.978 9 C -0.507 4.507 10 H 0.022 0.978 11 C 0.018 3.982 12 N -0.941 5.941 13 Si 0.951 3.049 14 H -0.238 1.238 15 H -0.284 1.284 16 H -0.252 1.252 17 N -0.681 5.681 18 C 0.031 3.969 19 C 0.162 3.838 20 C -0.149 4.149 21 C -0.148 4.148 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.272 0.728 30 H 0.327 0.673 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.090 0.910 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 6.614 18.708 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C -0.018 4.018 4 N -0.326 5.326 5 C 0.318 3.682 6 O -0.474 6.474 7 C 0.067 3.933 8 H 0.039 0.961 9 C -0.546 4.546 10 H 0.041 0.959 11 C -0.180 4.180 12 N -0.580 5.580 13 Si 0.774 3.226 14 H -0.163 1.163 15 H -0.211 1.211 16 H -0.177 1.177 17 N -0.320 5.320 18 C -0.098 4.098 19 C 0.077 3.923 20 C -0.207 4.207 21 C -0.206 4.206 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.666 5.981 18.191 21.019 hybrid contribution 1.217 0.652 -1.042 1.730 sum -7.449 6.633 17.149 19.839 Atomic orbital electron populations 1.21650 0.93075 1.02433 1.02569 1.21962 0.97752 0.96850 1.01162 1.21741 0.79032 0.97571 1.03464 1.47739 1.07218 1.72154 1.05468 1.20381 0.90604 0.74106 0.83129 1.90554 1.67659 1.52189 1.36959 1.19354 0.88862 0.95676 0.89388 0.96056 1.20708 0.93037 1.23632 1.17196 0.95913 1.25960 1.00366 0.96124 0.95581 1.70041 1.17145 1.37591 1.33211 0.85793 0.77855 0.79462 0.79443 1.16279 1.21086 1.17703 1.61403 1.08199 1.58712 1.03640 1.22642 0.95315 0.95316 0.96531 1.20735 0.91184 0.97819 0.82516 1.22176 1.01738 0.97726 0.99048 1.22214 1.02377 0.94905 1.01119 0.92033 0.93451 0.90002 0.90276 0.96262 0.92676 0.86323 0.91902 0.85025 0.85993 0.94387 0.89993 0.88132 0.92272 0.94652 0.89080 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.14 -4.03 6.04 30.60 0.18 -3.84 16 3 C 0.10 3.09 4.95 86.38 0.43 3.52 16 4 N -0.59 -21.37 2.37 -778.36 -1.84 -23.22 16 5 C 0.53 25.96 7.10 87.68 0.62 26.58 16 6 O -0.59 -34.04 15.52 -3.02 -0.05 -34.09 16 7 C 0.18 9.09 2.15 43.28 0.09 9.18 16 8 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16 9 C -0.51 -31.82 9.07 25.60 0.23 -31.58 16 10 H 0.02 1.66 7.64 -2.91 -0.02 1.64 16 11 C 0.02 1.11 5.47 84.65 0.46 1.57 16 12 N -0.94 -60.62 13.96 21.45 0.30 -60.32 16 13 Si 0.95 43.04 24.57 68.60 1.69 44.72 16 14 H -0.24 -9.64 7.02 99.48 0.70 -8.94 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 17 N -0.68 -28.48 6.05 -499.74 -3.02 -31.51 16 18 C 0.03 0.92 5.26 86.18 0.45 1.37 16 19 C 0.16 4.35 0.91 3.63 0.00 4.36 16 20 C -0.15 -2.47 7.87 71.98 0.57 -1.91 16 21 C -0.15 -3.74 8.21 71.98 0.59 -3.15 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.08 2.04 5.51 -2.39 -0.01 2.03 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 1.92 7.26 -2.39 -0.02 1.90 16 28 H 0.12 2.43 5.51 -2.39 -0.01 2.42 16 29 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.33 13.39 4.12 -89.70 -0.37 13.02 16 31 H 0.12 2.65 8.11 -2.39 -0.02 2.63 16 32 H 0.04 1.09 8.05 -2.39 -0.02 1.07 16 33 H 0.08 1.12 6.30 -2.38 -0.02 1.10 16 34 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.03 1.20 7.89 -2.39 -0.02 1.18 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.51 5.70 -2.39 -0.01 1.50 16 Total: -1.00 -80.49 288.69 2.04 -78.45 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.61 Total: 22.13 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.35 Total: 3.82 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.56 Total: -115.04 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.05 Total: -34.09 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.69 Total: 44.72 kcal Total: -80.49 2.04 -78.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220392846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.876 kcal (2) G-P(sol) polarization free energy of solvation -80.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds