Wall clock time and date at job start Mon Mar 30 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47145 * 2 1 4 4 N 1.46501 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.46013 * 118.53465 * 270.02116 * 4 3 2 6 6 C 1.52982 * 110.03913 * 161.81546 * 5 4 3 7 7 H 1.08996 * 109.59708 * 290.52016 * 6 5 4 8 8 C 1.53003 * 109.58848 * 170.06869 * 6 5 4 9 9 N 1.47182 * 108.72919 * 50.29534 * 6 5 4 10 10 C 1.46900 * 111.00304 * 54.36528 * 9 6 5 11 11 C 1.46903 * 110.17763 * 290.99538 * 9 6 5 12 12 H 1.08997 * 109.30470 * 290.20434 * 11 9 6 13 13 C 1.50690 * 109.39033 * 170.45229 * 11 9 6 14 14 H 1.08006 * 120.00335 * 353.66766 * 13 11 9 15 15 C 1.37878 * 120.00321 * 173.65825 * 13 11 9 16 16 N 1.31517 * 119.99979 * 337.34259 * 15 13 11 17 17 Si 1.86802 * 120.00326 * 157.05787 * 15 13 11 18 18 H 1.48496 * 109.47406 * 180.27739 * 17 15 13 19 19 H 1.48498 * 109.47283 * 300.28214 * 17 15 13 20 20 H 1.48500 * 109.46706 * 60.27912 * 17 15 13 21 21 C 1.33714 * 118.53595 * 90.00369 * 4 3 2 22 22 O 1.21280 * 118.62613 * 1.72451 * 21 4 3 23 23 H 1.09007 * 109.46850 * 299.99525 * 1 2 3 24 24 H 1.08998 * 109.47457 * 59.99928 * 1 2 3 25 25 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46850 * 240.00475 * 2 1 3 27 27 H 1.08998 * 109.47065 * 120.00443 * 2 1 3 28 28 H 1.09000 * 109.47079 * 60.00150 * 3 2 1 29 29 H 1.08998 * 109.47002 * 300.00351 * 3 2 1 30 30 H 1.08998 * 109.37868 * 281.99167 * 5 4 3 31 31 H 1.08998 * 109.37284 * 41.75669 * 5 4 3 32 32 H 1.08994 * 109.47443 * 60.00466 * 8 6 5 33 33 H 1.09007 * 109.46672 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47136 * 299.99375 * 8 6 5 35 35 H 1.08994 * 109.47186 * 293.15221 * 10 9 6 36 36 H 1.09000 * 109.47073 * 53.15733 * 10 9 6 37 37 H 1.09004 * 109.47005 * 173.15358 * 10 9 6 38 38 H 0.97002 * 119.99499 * 353.58433 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2031 1.4418 1.2819 6 6 5.6530 0.9934 1.0893 7 1 5.6771 -0.0658 0.8332 8 6 6.4390 1.2303 2.3804 9 7 6.2495 1.7790 -0.0030 10 6 6.1082 3.2197 0.2465 11 6 5.6413 1.4050 -1.2869 12 1 5.9588 0.3976 -1.5562 13 6 6.0881 2.3720 -2.3527 14 1 6.6722 3.2399 -2.0840 15 6 5.7515 2.1490 -3.6710 16 7 5.4517 0.9344 -4.0767 17 14 5.7134 3.5732 -4.8792 18 1 5.3185 3.0738 -6.2208 19 1 4.7302 4.5865 -4.4191 20 1 7.0613 4.1914 -4.9581 21 6 4.1433 1.4427 -1.1756 22 8 3.4856 1.4750 -2.1941 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 4.1883 2.4474 1.7022 31 1 3.7022 0.7566 1.9658 32 1 5.9875 0.6582 3.1909 33 1 7.4717 0.9106 2.2409 34 1 6.4180 2.2914 2.6290 35 1 5.0545 3.4946 0.2015 36 1 6.5041 3.4580 1.2338 37 1 6.6614 3.7756 -0.5106 38 1 5.5570 0.1819 -3.4737 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220395955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:11 Heat of formation + Delta-G solvation = -22.160880 kcal Electronic energy + Delta-G solvation = -18829.196308 eV Core-core repulsion = 16093.014082 eV Total energy + Delta-G solvation = -2736.182226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05225 -36.77053 -35.45963 -33.11502 -32.05024 -30.91157 -27.53435 -26.45776 -25.22240 -25.11350 -22.25027 -21.46501 -20.18732 -18.04691 -16.93515 -16.20432 -15.73412 -15.16726 -14.65839 -14.26733 -13.92720 -13.63123 -13.25280 -13.04590 -12.66970 -12.48165 -12.30971 -12.06725 -11.76177 -11.63508 -11.24086 -11.07502 -11.00740 -10.81412 -10.73801 -10.47643 -10.40611 -10.16075 -9.98604 -9.11291 -8.92502 -8.04673 -7.95503 -7.29454 -6.33361 -4.00513 3.47305 3.55839 3.69379 3.72132 3.88229 4.58359 4.73902 5.02708 5.15670 5.22016 5.36777 5.42164 5.49329 5.54108 5.59524 5.67732 5.76486 5.82958 5.91103 6.01900 6.05925 6.14499 6.19984 6.23759 6.34551 6.38598 6.48894 6.50321 6.70259 6.98839 7.18272 7.47928 7.77584 8.18887 8.36416 8.60559 8.86116 9.39024 9.69084 11.02069 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.010951 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.831544 B = 2556.151670 C = 3601.194529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.627 5.627 5 C 0.093 3.907 6 C 0.059 3.941 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.517 5.517 10 C 0.031 3.969 11 C 0.203 3.797 12 H 0.060 0.940 13 C -0.620 4.620 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.859 5.859 17 Si 1.058 2.942 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.477 3.523 22 O -0.521 6.521 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.020 0.980 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 0.107 12.757 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.012 4.012 4 N -0.364 5.364 5 C -0.033 4.033 6 C -0.051 4.051 7 H 0.099 0.901 8 C -0.194 4.194 9 N -0.240 5.240 10 C -0.117 4.117 11 C 0.093 3.907 12 H 0.077 0.923 13 C -0.657 4.657 14 H 0.084 0.916 15 C -0.155 4.155 16 N -0.489 5.489 17 Si 0.887 3.113 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.216 1.216 21 C 0.265 3.735 22 O -0.393 6.393 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.896 0.395 10.562 11.265 hybrid contribution -0.754 -0.250 1.852 2.015 sum -4.649 0.145 12.415 13.258 Atomic orbital electron populations 1.21676 0.95695 1.01383 1.01600 1.21835 0.95561 0.98013 1.02071 1.21325 0.81711 0.96202 1.02007 1.47982 1.05626 1.76472 1.06325 1.21951 0.94635 1.00620 0.86066 1.22055 0.90341 0.99132 0.93556 0.90132 1.21737 1.00730 1.01667 0.95232 1.62614 1.55157 1.04668 1.01591 1.22361 0.99498 0.89546 1.00328 1.19547 0.83493 0.99744 0.87916 0.92306 1.21458 1.40811 1.11395 0.91993 0.91581 1.25591 0.92041 1.00491 0.97391 1.70667 1.40383 0.99117 1.38758 0.83746 0.76141 0.75328 0.76132 1.20854 1.21520 1.21552 1.23143 0.94288 0.74238 0.81784 1.90623 1.67111 1.47444 1.34137 0.93067 0.92539 0.92887 0.91575 0.92625 0.92194 0.90200 0.92740 0.92069 0.92727 0.91479 0.92469 0.96179 0.93263 0.90113 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.14 -2.12 6.25 -26.73 -0.17 -2.29 16 3 C 0.11 1.94 5.29 -4.04 -0.02 1.91 16 4 N -0.63 -12.48 2.63 -174.58 -0.46 -12.94 16 5 C 0.09 1.49 4.94 -4.31 -0.02 1.46 16 6 C 0.06 0.98 2.84 -67.57 -0.19 0.79 16 7 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 8 C -0.14 -1.73 9.13 37.16 0.34 -1.39 16 9 N -0.52 -10.76 4.92 -229.74 -1.13 -11.89 16 10 C 0.03 0.60 8.03 60.06 0.48 1.08 16 11 C 0.20 5.16 2.22 -70.23 -0.16 5.00 16 12 H 0.06 1.63 7.04 -51.93 -0.37 1.26 16 13 C -0.62 -17.44 7.82 -34.44 -0.27 -17.70 16 14 H 0.07 1.83 5.73 -52.48 -0.30 1.53 16 15 C 0.06 1.66 4.28 -17.82 -0.08 1.58 16 16 N -0.86 -26.54 12.71 55.43 0.70 -25.83 16 17 Si 1.06 26.29 29.96 -169.99 -5.09 21.19 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.48 11.92 6.41 -11.67 -0.07 11.84 16 22 O -0.52 -15.10 13.98 5.56 0.08 -15.02 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.87 8.03 -51.93 -0.42 0.46 16 29 H 0.08 1.60 7.21 -51.93 -0.37 1.22 16 30 H 0.05 0.83 7.00 -51.93 -0.36 0.47 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.70 6.38 -51.93 -0.33 0.37 16 35 H 0.02 0.41 6.11 -51.93 -0.32 0.09 16 36 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 37 H 0.08 1.70 5.92 -51.93 -0.31 1.39 16 38 H 0.27 8.34 7.16 -40.82 -0.29 8.04 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -32.56 292.59 -7.27 -39.82 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.99 Total: -0.56 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.21 Total: 0.81 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.89 Total: -50.66 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.56 -7.27 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220395955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds