Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 H 1.08992 * 109.47456 * 305.00181 * 3 2 1 5 5 C 1.53002 * 109.47177 * 184.99752 * 3 2 1 6 6 N 1.46502 * 109.46650 * 65.00521 * 3 2 1 7 7 C 1.47249 * 120.07246 * 239.97529 * 6 3 2 8 8 C 1.53106 * 108.40373 * 250.01590 * 7 6 3 9 9 C 1.51685 * 110.75364 * 274.40897 * 8 7 6 10 10 N 1.45759 * 113.93529 * 66.77316 * 9 8 7 11 11 C 1.46879 * 112.43547 * 292.28072 * 10 9 8 12 12 H 1.09003 * 109.59908 * 326.02362 * 11 10 9 13 13 C 1.50698 * 109.60238 * 205.70465 * 11 10 9 14 14 H 1.07993 * 120.00102 * 240.00488 * 13 11 10 15 15 C 1.37882 * 120.00060 * 59.99568 * 13 11 10 16 16 N 1.31512 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99927 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46875 * 90.00289 * 17 15 13 19 19 H 1.48497 * 109.47089 * 210.00112 * 17 15 13 20 20 H 1.48500 * 109.47206 * 330.00498 * 17 15 13 21 21 C 1.33609 * 120.07839 * 59.99638 * 6 3 2 22 22 O 1.21275 * 119.88548 * 0.52327 * 21 6 3 23 23 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47273 * 299.99665 * 1 2 3 25 25 H 1.09008 * 109.47128 * 59.99699 * 1 2 3 26 26 H 1.09002 * 109.47016 * 240.00485 * 2 1 3 27 27 H 1.08996 * 109.47498 * 120.00356 * 2 1 3 28 28 H 1.09006 * 109.46923 * 60.00538 * 5 3 2 29 29 H 1.08996 * 109.46749 * 180.02562 * 5 3 2 30 30 H 1.08992 * 109.47278 * 300.00538 * 5 3 2 31 31 H 1.09000 * 109.67870 * 9.74317 * 7 6 3 32 32 H 1.09008 * 109.67933 * 130.28521 * 7 6 3 33 33 H 1.08997 * 109.22299 * 34.74406 * 8 7 6 34 34 H 1.09010 * 109.22000 * 154.12933 * 8 7 6 35 35 H 1.08999 * 108.59411 * 305.61711 * 9 8 7 36 36 H 1.09004 * 108.58907 * 187.92099 * 9 8 7 37 37 H 1.00901 * 110.99900 * 167.26639 * 10 9 8 38 38 H 0.97001 * 120.00286 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 0.7996 3.2974 1.2237 8 6 1.6466 4.5023 1.6418 9 6 1.6763 4.6403 3.1521 10 7 2.3744 3.5559 3.8313 11 6 1.6649 2.2748 3.7182 12 1 0.5893 2.4516 3.7161 13 6 2.0297 1.3904 4.8825 14 1 2.4985 0.4334 4.7075 15 6 1.7649 1.8030 6.1712 16 7 1.1936 2.9682 6.3843 17 14 2.2177 0.7069 7.6145 18 1 3.5982 1.0226 8.0618 19 1 1.2690 0.9431 8.7322 20 1 2.1462 -0.7163 7.1967 21 6 2.0725 1.6074 2.4218 22 8 2.7830 0.6249 2.4454 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8532 0.9571 -1.0571 29 1 3.9281 2.4720 -0.1252 30 1 3.9994 0.9053 0.7160 31 1 0.4154 3.4510 0.2153 32 1 -0.0312 3.1737 1.9186 33 1 2.6639 4.3711 1.2733 34 1 1.2217 5.4076 1.2077 35 1 0.6503 4.6762 3.5181 36 1 2.1654 5.5809 3.4055 37 1 2.5499 3.7880 4.7974 38 1 1.0070 3.2584 7.2909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220400864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -40.392510 kcal Electronic energy + Delta-G solvation = -18837.164509 eV Core-core repulsion = 16100.191700 eV Total energy + Delta-G solvation = -2736.972809 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69840 -36.02829 -35.62879 -33.22822 -31.82181 -30.13649 -29.59722 -26.92012 -24.26012 -24.01447 -22.95252 -20.84557 -20.17110 -17.67068 -16.67175 -16.50095 -15.14512 -14.89472 -14.62739 -14.15383 -13.68457 -13.42917 -13.23653 -12.98729 -12.79250 -12.57811 -12.48672 -11.91520 -11.67128 -11.33450 -11.26549 -10.95820 -10.82601 -10.76508 -10.66274 -10.49895 -10.37766 -10.07802 -9.98191 -9.17190 -8.69960 -8.43962 -7.90491 -7.01667 -6.16884 -4.18763 3.30437 3.36556 3.43056 3.72788 3.85260 4.40389 5.05234 5.10958 5.26908 5.36902 5.44960 5.52031 5.55619 5.68273 5.83198 5.88277 5.97889 6.02246 6.16962 6.20723 6.22134 6.26862 6.35930 6.40764 6.50168 6.59663 6.72685 6.74274 6.82922 7.04297 7.39590 7.84546 7.89226 8.35366 8.56224 8.93684 8.98532 9.39369 9.50743 10.92145 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025470 B = 0.009054 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.086797 B = 3091.931078 C = 3657.810363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.150 3.850 4 H 0.071 0.929 5 C -0.166 4.166 6 N -0.616 5.616 7 C 0.117 3.883 8 C -0.135 4.135 9 C 0.064 3.936 10 N -0.682 5.682 11 C 0.209 3.791 12 H 0.020 0.980 13 C -0.498 4.498 14 H 0.078 0.922 15 C 0.060 3.940 16 N -0.905 5.905 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.537 3.463 22 O -0.543 6.543 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.371 0.629 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 2.036 -11.312 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.046 3.954 4 H 0.089 0.911 5 C -0.224 4.224 6 N -0.351 5.351 7 C -0.006 4.006 8 C -0.174 4.174 9 C -0.067 4.067 10 N -0.321 5.321 11 C 0.098 3.902 12 H 0.038 0.962 13 C -0.537 4.537 14 H 0.096 0.904 15 C -0.141 4.141 16 N -0.545 5.545 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.197 1.197 21 C 0.326 3.674 22 O -0.419 6.419 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.196 0.804 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.240 1.485 -11.662 11.822 hybrid contribution -0.652 -0.058 1.309 1.463 sum -1.892 1.426 -10.354 10.621 Atomic orbital electron populations 1.21694 0.96217 1.01011 1.01306 1.21975 0.95754 0.97057 1.03393 1.20939 0.94988 0.93178 0.86288 0.91073 1.22176 0.95846 1.01906 1.02486 1.48207 1.52080 1.28877 1.05948 1.21720 0.93103 0.84813 1.01008 1.21865 1.00906 0.97136 0.97508 1.21263 0.97067 0.95270 0.93069 1.59773 1.48480 1.01435 1.22393 1.19213 0.93321 0.88329 0.89319 0.96238 1.21275 1.39236 1.03974 0.89194 0.90376 1.25049 0.94390 0.95500 0.99193 1.69801 1.43071 1.20004 1.21668 0.86348 0.78210 0.80959 0.81109 1.20449 1.21336 1.19671 1.21480 0.77764 0.83188 0.84956 1.90439 1.37062 1.27247 1.87106 0.93266 0.92550 0.93644 0.92170 0.89227 0.92973 0.93136 0.89966 0.91102 0.91208 0.91217 0.91740 0.96181 0.93011 0.80367 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.80 37.16 0.36 -1.70 16 2 C -0.14 -2.25 5.28 -26.73 -0.14 -2.39 16 3 C 0.15 2.37 2.69 -67.93 -0.18 2.19 16 4 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 5 C -0.17 -2.66 9.12 37.16 0.34 -2.32 16 6 N -0.62 -11.37 1.88 -165.48 -0.31 -11.68 16 7 C 0.12 1.84 5.95 -3.58 -0.02 1.82 16 8 C -0.14 -2.14 5.86 -27.34 -0.16 -2.30 16 9 C 0.06 1.23 5.92 -5.11 -0.03 1.20 16 10 N -0.68 -16.16 6.34 -110.41 -0.70 -16.86 16 11 C 0.21 5.29 2.04 -69.68 -0.14 5.15 16 12 H 0.02 0.54 6.66 -51.93 -0.35 0.19 16 13 C -0.50 -14.05 8.51 -34.44 -0.29 -14.34 16 14 H 0.08 2.33 6.84 -52.49 -0.36 1.97 16 15 C 0.06 1.63 5.11 -17.82 -0.09 1.54 16 16 N -0.91 -24.74 11.80 55.43 0.65 -24.08 16 17 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.54 12.52 6.47 -11.16 -0.07 12.45 16 22 O -0.54 -13.98 11.70 5.56 0.07 -13.91 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 25 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.74 6.05 -51.93 -0.31 1.42 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.61 6.14 -51.93 -0.32 1.29 16 31 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 32 H 0.07 1.18 6.76 -51.92 -0.35 0.83 16 33 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.02 0.41 7.78 -51.93 -0.40 0.00 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.37 9.57 6.53 -39.29 -0.26 9.31 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 292.43 15.07 4.41 4.41 Total: -1.00 -29.32 292.43 -7.39 -36.72 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.06 Total: 7.54 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.43 Total: 1.30 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.36 Total: -52.62 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.32 -7.39 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220400864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.675 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds