Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 H 1.08992 * 109.47456 * 305.00181 * 3 2 1 5 5 C 1.53002 * 109.47177 * 184.99752 * 3 2 1 6 6 N 1.46502 * 109.46650 * 65.00521 * 3 2 1 7 7 C 1.47249 * 120.07246 * 239.97529 * 6 3 2 8 8 C 1.53106 * 108.40373 * 250.01590 * 7 6 3 9 9 C 1.51685 * 110.75364 * 274.40897 * 8 7 6 10 10 N 1.45759 * 113.93529 * 66.77316 * 9 8 7 11 11 C 1.46879 * 112.43547 * 292.28072 * 10 9 8 12 12 H 1.09003 * 109.59908 * 326.02362 * 11 10 9 13 13 C 1.50698 * 109.60238 * 205.70465 * 11 10 9 14 14 H 1.07993 * 120.00102 * 240.00488 * 13 11 10 15 15 C 1.37882 * 120.00060 * 59.99568 * 13 11 10 16 16 N 1.31512 * 119.99906 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99927 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46875 * 90.00289 * 17 15 13 19 19 H 1.48497 * 109.47089 * 210.00112 * 17 15 13 20 20 H 1.48500 * 109.47206 * 330.00498 * 17 15 13 21 21 C 1.33609 * 120.07839 * 59.99638 * 6 3 2 22 22 O 1.21275 * 119.88548 * 0.52327 * 21 6 3 23 23 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47273 * 299.99665 * 1 2 3 25 25 H 1.09008 * 109.47128 * 59.99699 * 1 2 3 26 26 H 1.09002 * 109.47016 * 240.00485 * 2 1 3 27 27 H 1.08996 * 109.47498 * 120.00356 * 2 1 3 28 28 H 1.09006 * 109.46923 * 60.00538 * 5 3 2 29 29 H 1.08996 * 109.46749 * 180.02562 * 5 3 2 30 30 H 1.08992 * 109.47278 * 300.00538 * 5 3 2 31 31 H 1.09000 * 109.67870 * 9.74317 * 7 6 3 32 32 H 1.09008 * 109.67933 * 130.28521 * 7 6 3 33 33 H 1.08997 * 109.22299 * 34.74406 * 8 7 6 34 34 H 1.09010 * 109.22000 * 154.12933 * 8 7 6 35 35 H 1.08999 * 108.59411 * 305.61711 * 9 8 7 36 36 H 1.09004 * 108.58907 * 187.92099 * 9 8 7 37 37 H 1.00901 * 110.99900 * 167.26639 * 10 9 8 38 38 H 0.97001 * 120.00286 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 0.7996 3.2974 1.2237 8 6 1.6466 4.5023 1.6418 9 6 1.6763 4.6403 3.1521 10 7 2.3744 3.5559 3.8313 11 6 1.6649 2.2748 3.7182 12 1 0.5893 2.4516 3.7161 13 6 2.0297 1.3904 4.8825 14 1 2.4985 0.4334 4.7075 15 6 1.7649 1.8030 6.1712 16 7 1.1936 2.9682 6.3843 17 14 2.2177 0.7069 7.6145 18 1 3.5982 1.0226 8.0618 19 1 1.2690 0.9431 8.7322 20 1 2.1462 -0.7163 7.1967 21 6 2.0725 1.6074 2.4218 22 8 2.7830 0.6249 2.4454 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8532 0.9571 -1.0571 29 1 3.9281 2.4720 -0.1252 30 1 3.9994 0.9053 0.7160 31 1 0.4154 3.4510 0.2153 32 1 -0.0312 3.1737 1.9186 33 1 2.6639 4.3711 1.2733 34 1 1.2217 5.4076 1.2077 35 1 0.6503 4.6762 3.5181 36 1 2.1654 5.5809 3.4055 37 1 2.5499 3.7880 4.7974 38 1 1.0070 3.2584 7.2909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220400864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -60.208634 kcal Electronic energy + Delta-G solvation = -18838.023800 eV Core-core repulsion = 16100.191700 eV Total energy + Delta-G solvation = -2737.832100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30532 -37.67969 -37.24273 -34.98736 -33.48291 -31.79996 -30.89921 -28.72743 -25.82182 -25.74831 -24.34341 -22.26803 -21.68598 -19.33131 -18.64419 -18.08519 -16.82719 -16.66954 -16.23140 -15.83673 -15.27357 -14.91402 -14.61964 -14.54708 -14.17119 -14.05189 -14.01814 -13.64107 -13.10737 -12.88935 -12.84233 -12.65871 -12.51405 -12.21284 -12.09206 -11.97579 -11.77568 -11.68344 -11.44735 -11.21043 -10.78764 -10.20834 -9.41640 -8.88532 -8.26872 -6.37096 1.38059 1.39585 1.51160 2.03533 2.27353 2.44215 3.01873 3.75727 3.91036 4.05539 4.07666 4.25840 4.28881 4.43692 4.49022 4.59462 4.68446 4.76542 4.80398 4.81073 4.87387 4.92860 5.02719 5.06976 5.10448 5.16047 5.31956 5.42140 5.44843 5.45663 5.70120 5.87098 6.02774 6.58976 6.68222 6.83142 7.02441 7.32057 7.68188 8.80263 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025470 B = 0.009054 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.086797 B = 3091.931078 C = 3657.810363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.144 3.856 4 H 0.117 0.883 5 C -0.161 4.161 6 N -0.606 5.606 7 C 0.110 3.890 8 C -0.125 4.125 9 C 0.059 3.941 10 N -0.689 5.689 11 C 0.211 3.789 12 H -0.003 1.003 13 C -0.530 4.530 14 H 0.050 0.950 15 C 0.025 3.975 16 N -0.916 5.916 17 Si 0.963 3.037 18 H -0.273 1.273 19 H -0.274 1.274 20 H -0.279 1.279 21 C 0.533 3.467 22 O -0.578 6.578 23 H 0.053 0.947 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.121 0.879 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.006 0.994 36 H 0.066 0.934 37 H 0.355 0.645 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 3.128 -13.521 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.041 3.959 4 H 0.135 0.865 5 C -0.219 4.219 6 N -0.339 5.339 7 C -0.012 4.012 8 C -0.164 4.164 9 C -0.071 4.071 10 N -0.325 5.325 11 C 0.100 3.900 12 H 0.014 0.986 13 C -0.569 4.569 14 H 0.068 0.932 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.199 1.199 20 H -0.204 1.204 21 C 0.321 3.679 22 O -0.457 6.457 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.025 0.975 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.906 2.614 -13.917 14.288 hybrid contribution -0.479 -0.363 1.964 2.054 sum -2.385 2.251 -11.953 12.395 Atomic orbital electron populations 1.21653 0.94986 1.01555 1.01492 1.21935 0.96798 0.96891 1.02434 1.21277 0.95112 0.93571 0.85914 0.86531 1.22107 0.95880 1.01680 1.02207 1.48154 1.51030 1.29264 1.05474 1.22009 0.92179 0.83457 1.03560 1.21828 1.00913 0.99153 0.94512 1.21466 0.95851 0.94342 0.95440 1.59784 1.49045 1.02138 1.21546 1.19021 0.91898 0.88924 0.90155 0.98590 1.21363 1.40419 1.03877 0.91224 0.93171 1.25672 0.94028 0.96730 1.01036 1.69864 1.42768 1.20602 1.22342 0.85479 0.78361 0.78865 0.78451 1.19851 1.19851 1.20396 1.21059 0.78008 0.82853 0.85973 1.90429 1.38878 1.28607 1.87826 0.92759 0.95211 0.90355 0.89396 0.93899 0.89798 0.92909 0.94336 0.86078 0.92831 0.91898 0.87253 0.97538 0.91556 0.82304 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.80 71.98 0.71 -2.96 16 2 C -0.14 -4.25 5.28 30.59 0.16 -4.08 16 3 C 0.14 4.16 2.69 44.99 0.12 4.28 16 4 H 0.12 2.41 7.60 -2.39 -0.02 2.39 16 5 C -0.16 -4.87 9.12 71.98 0.66 -4.22 16 6 N -0.61 -21.73 1.88 -796.50 -1.50 -23.23 16 7 C 0.11 3.17 5.95 86.27 0.51 3.69 16 8 C -0.13 -3.61 5.86 30.20 0.18 -3.44 16 9 C 0.06 2.24 5.92 86.09 0.51 2.75 16 10 N -0.69 -33.46 6.34 -503.24 -3.19 -36.65 16 11 C 0.21 11.16 2.04 43.65 0.09 11.25 16 12 H 0.00 -0.18 6.66 -2.39 -0.02 -0.19 16 13 C -0.53 -31.41 8.51 25.60 0.22 -31.20 16 14 H 0.05 3.19 6.84 -2.91 -0.02 3.17 16 15 C 0.03 1.42 5.11 84.66 0.43 1.85 16 16 N -0.92 -51.02 11.80 21.45 0.25 -50.77 16 17 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 C 0.53 25.65 6.47 88.06 0.57 26.22 16 22 O -0.58 -31.42 11.70 -3.01 -0.04 -31.46 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 0.92 7.75 -2.39 -0.02 0.90 16 25 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 28 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.52 6.14 -2.39 -0.01 1.50 16 31 H 0.12 2.33 7.62 -2.39 -0.02 2.31 16 32 H 0.05 1.75 6.76 -2.38 -0.02 1.74 16 33 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.11 2.23 8.14 -2.38 -0.02 2.22 16 35 H 0.01 0.26 7.78 -2.39 -0.02 0.24 16 36 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.35 18.90 6.53 -89.69 -0.59 18.31 16 38 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.43 292.43 2.16 -66.27 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.45 Total: 24.41 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.15 Total: 4.14 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.44 Total: -110.64 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.04 Total: -31.46 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -68.43 2.16 -66.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220400864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.065 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds