Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46868 * 2 1 4 4 N 1.46501 * 109.47229 * 179.97438 * 3 2 1 5 5 C 1.47253 * 120.07766 * 270.02553 * 4 3 2 6 6 C 1.53107 * 108.40115 * 249.96984 * 5 4 3 7 7 C 1.51691 * 110.75317 * 274.40981 * 6 5 4 8 8 N 1.45750 * 113.93418 * 66.76872 * 7 6 5 9 9 C 1.46905 * 111.00050 * 57.30376 * 8 7 6 10 10 C 1.46869 * 112.44115 * 292.27906 * 8 7 6 11 11 H 1.08996 * 109.73612 * 325.94925 * 10 8 7 12 12 C 1.50700 * 109.60430 * 205.54417 * 10 8 7 13 13 H 1.07999 * 119.99988 * 0.80455 * 12 10 8 14 14 C 1.37885 * 120.00047 * 180.80635 * 12 10 8 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 10 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 C 1.33607 * 120.07437 * 89.99468 * 4 3 2 21 21 O 1.21280 * 119.88418 * 0.52786 * 20 4 3 22 22 H 1.08993 * 109.47058 * 59.99821 * 1 2 3 23 23 H 1.09002 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47296 * 299.99626 * 1 2 3 25 25 H 1.08996 * 109.47133 * 240.00007 * 2 1 3 26 26 H 1.09008 * 109.47084 * 119.99666 * 2 1 3 27 27 H 1.09003 * 109.46856 * 60.00105 * 3 2 1 28 28 H 1.08993 * 109.47427 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.67420 * 9.69615 * 5 4 3 30 30 H 1.08994 * 109.68079 * 130.19825 * 5 4 3 31 31 H 1.09001 * 109.22212 * 34.74074 * 6 5 4 32 32 H 1.08996 * 109.22008 * 154.07977 * 6 5 4 33 33 H 1.09003 * 108.58797 * 187.92116 * 7 6 5 34 34 H 1.08994 * 108.59024 * 305.76040 * 7 6 5 35 35 H 1.08994 * 109.46952 * 294.17228 * 9 8 7 36 36 H 1.08997 * 109.46954 * 54.17430 * 9 8 7 37 37 H 1.08996 * 109.46853 * 174.17271 * 9 8 7 38 38 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2424 1.4423 1.2752 6 6 4.9151 2.8072 1.4447 7 6 6.2597 2.8346 0.7432 8 7 6.1711 2.7424 -0.7087 9 6 5.3410 3.8242 -1.2553 10 6 5.6890 1.4302 -1.1588 11 1 6.0499 0.6541 -0.4839 12 6 6.1891 1.1592 -2.5543 13 1 6.8155 1.8835 -3.0536 14 6 5.8469 -0.0136 -3.1937 15 7 6.2838 -0.2503 -4.4114 16 14 4.7697 -1.2698 -2.3272 17 1 3.3423 -0.9843 -2.6206 18 1 5.1115 -2.6319 -2.8100 19 1 4.9991 -1.1919 -0.8621 20 6 4.1750 1.4424 -1.1553 21 8 3.5683 1.4518 -2.2054 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.5505 1.2691 2.0995 30 1 4.9996 0.6585 1.2609 31 1 4.2730 3.5789 1.0201 32 1 5.0601 3.0063 2.5065 33 1 6.7679 3.7635 1.0021 34 1 6.8583 1.9993 1.1065 35 1 4.3116 3.6966 -0.9207 36 1 5.7201 4.7847 -0.9063 37 1 5.3756 3.7939 -2.3443 38 1 6.0427 -1.0751 -4.8613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220401249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -15.659360 kcal Electronic energy + Delta-G solvation = -19142.308382 eV Core-core repulsion = 16406.408083 eV Total energy + Delta-G solvation = -2735.900299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17233 -36.65690 -35.74860 -33.19536 -32.37945 -30.89177 -28.60821 -26.52441 -25.76536 -24.05185 -22.65992 -21.49373 -19.79342 -18.29413 -16.97819 -16.44298 -15.94793 -15.27990 -14.74979 -14.57572 -14.05369 -13.83298 -13.54259 -13.20506 -12.79327 -12.59967 -12.20360 -12.06273 -11.88113 -11.78952 -11.42010 -11.25000 -11.21131 -11.05226 -10.62899 -10.52796 -10.32960 -10.17476 -9.86535 -9.37294 -8.96510 -8.48449 -8.11216 -7.43901 -6.01414 -4.01168 3.29251 3.35020 3.48083 3.53966 3.61727 4.49249 4.80532 4.97963 5.01203 5.06897 5.21370 5.24573 5.39753 5.42852 5.51276 5.71871 5.76106 5.80880 5.82153 5.90996 5.96707 6.06704 6.07429 6.11195 6.16632 6.32163 6.42619 6.46538 6.53942 6.77732 7.06853 7.47903 7.70857 7.87687 8.13130 8.61041 9.07068 9.16237 9.60899 11.10534 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.014802 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.454781 B = 1891.134820 C = 2939.126858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.630 5.630 5 C 0.114 3.886 6 C -0.176 4.176 7 C 0.049 3.951 8 N -0.511 5.511 9 C 0.029 3.971 10 C 0.182 3.818 11 H 0.053 0.947 12 C -0.490 4.490 13 H 0.088 0.912 14 C 0.092 3.908 15 N -0.890 5.890 16 Si 0.869 3.131 17 H -0.265 1.265 18 H -0.295 1.295 19 H -0.273 1.273 20 C 0.469 3.531 21 O -0.512 6.512 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 3.644 14.407 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C -0.009 4.009 4 N -0.366 5.366 5 C -0.010 4.010 6 C -0.216 4.216 7 C -0.080 4.080 8 N -0.233 5.233 9 C -0.119 4.119 10 C 0.071 3.929 11 H 0.070 0.930 12 C -0.527 4.527 13 H 0.106 0.894 14 C -0.112 4.112 15 N -0.528 5.528 16 Si 0.698 3.302 17 H -0.190 1.190 18 H -0.222 1.222 19 H -0.198 1.198 20 C 0.257 3.743 21 O -0.385 6.385 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.694 3.580 13.449 15.444 hybrid contribution -1.586 -0.920 0.849 2.021 sum -8.280 2.660 14.298 16.736 Atomic orbital electron populations 1.21670 0.95479 1.01552 1.01610 1.21975 0.95839 0.98081 1.02512 1.21379 0.81097 0.96248 1.02156 1.48498 1.05626 1.75617 1.06884 1.21715 0.96079 0.97387 0.85803 1.22453 0.99846 0.97969 1.01330 1.21837 0.95095 1.02420 0.88633 1.61701 1.51571 1.03482 1.06575 1.22339 0.94134 0.93342 1.02083 1.20325 0.84584 0.88147 0.99849 0.92988 1.20522 1.30861 1.04865 0.96480 0.89401 1.24789 0.94403 0.97558 0.94443 1.69858 1.45021 1.25709 1.12197 0.87084 0.82974 0.80525 0.79664 1.19015 1.22197 1.19848 1.23303 0.94009 0.74616 0.82408 1.90585 1.70208 1.46523 1.31155 0.92535 0.92794 0.92926 0.91466 0.92310 0.91640 0.90300 0.90553 0.90981 0.91257 0.90820 0.91328 0.91162 0.96094 0.92776 0.90326 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.15 -2.28 6.26 -26.73 -0.17 -2.45 16 3 C 0.11 1.85 5.36 -4.04 -0.02 1.83 16 4 N -0.63 -11.73 2.33 -173.05 -0.40 -12.13 16 5 C 0.11 1.67 5.92 -3.58 -0.02 1.64 16 6 C -0.18 -2.33 5.45 -27.34 -0.15 -2.48 16 7 C 0.05 0.77 5.23 -5.11 -0.03 0.74 16 8 N -0.51 -10.51 4.73 -239.10 -1.13 -11.64 16 9 C 0.03 0.57 8.27 60.07 0.50 1.07 16 10 C 0.18 4.39 1.43 -69.69 -0.10 4.29 16 11 H 0.05 1.26 5.75 -51.93 -0.30 0.96 16 12 C -0.49 -14.35 8.50 -34.44 -0.29 -14.64 16 13 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 14 C 0.09 2.78 5.16 -17.82 -0.09 2.69 16 15 N -0.89 -28.34 13.96 55.43 0.77 -27.56 16 16 Si 0.87 23.26 24.47 -169.99 -4.16 19.10 16 17 H -0.26 -7.34 6.45 56.52 0.36 -6.98 16 18 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 19 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 20 C 0.47 10.96 2.34 -11.16 -0.03 10.93 16 21 O -0.51 -13.98 13.33 5.56 0.07 -13.91 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.32 7.79 -51.93 -0.40 0.91 16 26 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 27 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 28 H 0.08 1.42 7.40 -51.93 -0.38 1.04 16 29 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 30 H 0.07 1.12 6.77 -51.93 -0.35 0.77 16 31 H 0.07 0.99 6.46 -51.93 -0.34 0.65 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 35 H 0.02 0.41 5.18 -51.93 -0.27 0.14 16 36 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 37 H 0.08 1.76 7.83 -51.93 -0.41 1.35 16 38 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -33.94 286.99 -6.82 -40.76 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.27 Total: -1.15 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.03 Total: 2.20 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.76 Total: -51.33 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.16 Total: 19.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.94 -6.82 -40.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220401249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.098 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds