Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46868 * 2 1 4 4 N 1.46501 * 109.47229 * 179.97438 * 3 2 1 5 5 C 1.47253 * 120.07766 * 270.02553 * 4 3 2 6 6 C 1.53107 * 108.40115 * 249.96984 * 5 4 3 7 7 C 1.51691 * 110.75317 * 274.40981 * 6 5 4 8 8 N 1.45750 * 113.93418 * 66.76872 * 7 6 5 9 9 C 1.46905 * 111.00050 * 57.30376 * 8 7 6 10 10 C 1.46869 * 112.44115 * 292.27906 * 8 7 6 11 11 H 1.08996 * 109.73612 * 325.94925 * 10 8 7 12 12 C 1.50700 * 109.60430 * 205.54417 * 10 8 7 13 13 H 1.07999 * 119.99988 * 0.80455 * 12 10 8 14 14 C 1.37885 * 120.00047 * 180.80635 * 12 10 8 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 10 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 C 1.33607 * 120.07437 * 89.99468 * 4 3 2 21 21 O 1.21280 * 119.88418 * 0.52786 * 20 4 3 22 22 H 1.08993 * 109.47058 * 59.99821 * 1 2 3 23 23 H 1.09002 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47296 * 299.99626 * 1 2 3 25 25 H 1.08996 * 109.47133 * 240.00007 * 2 1 3 26 26 H 1.09008 * 109.47084 * 119.99666 * 2 1 3 27 27 H 1.09003 * 109.46856 * 60.00105 * 3 2 1 28 28 H 1.08993 * 109.47427 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.67420 * 9.69615 * 5 4 3 30 30 H 1.08994 * 109.68079 * 130.19825 * 5 4 3 31 31 H 1.09001 * 109.22212 * 34.74074 * 6 5 4 32 32 H 1.08996 * 109.22008 * 154.07977 * 6 5 4 33 33 H 1.09003 * 108.58797 * 187.92116 * 7 6 5 34 34 H 1.08994 * 108.59024 * 305.76040 * 7 6 5 35 35 H 1.08994 * 109.46952 * 294.17228 * 9 8 7 36 36 H 1.08997 * 109.46954 * 54.17430 * 9 8 7 37 37 H 1.08996 * 109.46853 * 174.17271 * 9 8 7 38 38 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2424 1.4423 1.2752 6 6 4.9151 2.8072 1.4447 7 6 6.2597 2.8346 0.7432 8 7 6.1711 2.7424 -0.7087 9 6 5.3410 3.8242 -1.2553 10 6 5.6890 1.4302 -1.1588 11 1 6.0499 0.6541 -0.4839 12 6 6.1891 1.1592 -2.5543 13 1 6.8155 1.8835 -3.0536 14 6 5.8469 -0.0136 -3.1937 15 7 6.2838 -0.2503 -4.4114 16 14 4.7697 -1.2698 -2.3272 17 1 3.3423 -0.9843 -2.6206 18 1 5.1115 -2.6319 -2.8100 19 1 4.9991 -1.1919 -0.8621 20 6 4.1750 1.4424 -1.1553 21 8 3.5683 1.4518 -2.2054 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.5505 1.2691 2.0995 30 1 4.9996 0.6585 1.2609 31 1 4.2730 3.5789 1.0201 32 1 5.0601 3.0063 2.5065 33 1 6.7679 3.7635 1.0021 34 1 6.8583 1.9993 1.1065 35 1 4.3116 3.6966 -0.9207 36 1 5.7201 4.7847 -0.9063 37 1 5.3756 3.7939 -2.3443 38 1 6.0427 -1.0751 -4.8613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220401249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -42.225775 kcal Electronic energy + Delta-G solvation = -19143.460388 eV Core-core repulsion = 16406.408083 eV Total energy + Delta-G solvation = -2737.052305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78559 -38.23483 -37.27244 -34.78906 -34.23776 -32.38043 -30.38014 -27.85816 -27.33158 -25.59675 -24.34098 -22.74307 -21.18472 -20.04007 -18.83580 -18.12496 -17.58078 -16.96941 -16.21907 -16.08156 -15.76913 -15.16833 -15.02339 -14.70486 -14.54124 -14.24097 -13.87468 -13.36573 -13.27567 -13.06093 -12.97308 -12.69831 -12.64060 -12.38424 -12.15947 -12.10506 -11.85643 -11.69548 -11.66312 -11.56797 -10.91774 -10.62969 -9.61278 -9.03802 -8.34797 -6.37142 1.12070 1.23647 1.31563 1.76416 2.12898 2.27069 3.04463 3.27462 3.75354 3.89401 3.93573 4.04699 4.12855 4.24048 4.29926 4.45120 4.49086 4.56253 4.62648 4.68255 4.69074 4.81931 4.83796 4.90138 5.01845 5.06050 5.12613 5.15778 5.27837 5.31964 5.40187 5.72077 5.90719 6.25376 6.39594 6.62470 6.73449 7.28425 7.42597 8.81484 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.014802 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.454781 B = 1891.134820 C = 2939.126858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.112 3.888 4 N -0.623 5.623 5 C 0.100 3.900 6 C -0.165 4.165 7 C 0.041 3.959 8 N -0.530 5.530 9 C 0.039 3.961 10 C 0.184 3.816 11 H 0.059 0.941 12 C -0.491 4.491 13 H 0.043 0.957 14 C 0.035 3.965 15 N -0.941 5.941 16 Si 0.928 3.072 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.242 1.242 20 C 0.473 3.527 21 O -0.567 6.567 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.017 0.983 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 4.036 19.177 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C -0.010 4.010 4 N -0.358 5.358 5 C -0.022 4.022 6 C -0.205 4.205 7 C -0.086 4.086 8 N -0.254 5.254 9 C -0.109 4.109 10 C 0.073 3.927 11 H 0.077 0.923 12 C -0.530 4.530 13 H 0.061 0.939 14 C -0.164 4.164 15 N -0.581 5.581 16 Si 0.755 3.245 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.165 1.165 20 C 0.260 3.740 21 O -0.444 6.444 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.040 3.986 18.319 20.399 hybrid contribution -1.115 -0.906 -0.569 1.545 sum -9.155 3.080 17.750 20.208 Atomic orbital electron populations 1.21639 0.92950 1.02506 1.02620 1.21955 0.98104 0.97172 1.00988 1.21601 0.79290 0.96959 1.03177 1.48488 1.07026 1.73337 1.06903 1.22176 0.96951 0.98223 0.84825 1.22371 0.97600 0.96728 1.03761 1.22045 0.97301 1.04133 0.85169 1.61562 1.51656 1.01731 1.10434 1.22217 0.94444 0.94868 0.99380 1.20000 0.85597 0.90442 0.96709 0.92324 1.20799 1.29677 1.03505 0.98980 0.93862 1.25565 0.95837 0.99864 0.95109 1.69999 1.47346 1.26650 1.14096 0.86112 0.79780 0.78119 0.80469 1.21077 1.21612 1.16528 1.22750 0.93454 0.74584 0.83197 1.90568 1.70915 1.49465 1.33492 0.93610 0.91954 0.89803 0.96368 0.90307 0.86730 0.93034 0.85946 0.91638 0.91832 0.86067 0.88759 0.90533 0.96067 0.89066 0.94863 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.14 -4.12 6.26 30.60 0.19 -3.93 16 3 C 0.11 3.28 5.36 86.38 0.46 3.74 16 4 N -0.62 -21.44 2.33 -820.45 -1.91 -23.35 16 5 C 0.10 2.39 5.92 86.27 0.51 2.91 16 6 C -0.16 -3.44 5.45 30.20 0.16 -3.28 16 7 C 0.04 1.12 5.23 86.09 0.45 1.57 16 8 N -0.53 -21.32 4.73 -910.39 -4.30 -25.62 16 9 C 0.04 1.51 8.27 127.69 1.06 2.57 16 10 C 0.18 8.89 1.43 43.65 0.06 8.95 16 11 H 0.06 2.75 5.75 -2.39 -0.01 2.74 16 12 C -0.49 -30.17 8.50 25.60 0.22 -29.95 16 13 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 14 C 0.03 2.20 5.16 84.66 0.44 2.64 16 15 N -0.94 -63.11 13.96 21.45 0.30 -62.81 16 16 Si 0.93 49.70 24.47 68.60 1.68 51.38 16 17 H -0.28 -16.10 6.45 99.48 0.64 -15.46 16 18 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 19 H -0.24 -11.44 6.54 99.48 0.65 -10.79 16 20 C 0.47 21.93 2.34 88.06 0.21 22.14 16 21 O -0.57 -31.98 13.33 -3.03 -0.04 -32.02 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.02 0.68 7.79 -2.39 -0.02 0.67 16 26 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 27 H 0.11 2.27 8.03 -2.39 -0.02 2.25 16 28 H 0.05 1.81 7.40 -2.39 -0.02 1.79 16 29 H 0.12 1.90 7.92 -2.38 -0.02 1.88 16 30 H 0.07 1.71 6.77 -2.39 -0.02 1.70 16 31 H 0.06 1.47 6.46 -2.39 -0.02 1.45 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.00 7.78 -2.39 -0.02 1.98 16 35 H 0.02 0.81 5.18 -2.39 -0.01 0.80 16 36 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 37 H 0.03 1.55 7.83 -2.39 -0.02 1.53 16 38 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 Total: -1.00 -81.49 286.99 1.10 -80.39 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.90 Total: 6.98 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.47 Total: 5.05 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -5.91 Total: -111.78 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.04 Total: -32.02 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.68 Total: 51.38 kcal Total: -81.49 1.10 -80.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220401249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.166 kcal (2) G-P(sol) polarization free energy of solvation -81.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds