Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46755 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.45974 * 117.09427 * 90.00228 * 4 3 2 6 6 C 1.53100 * 110.34322 * 228.26578 * 5 4 3 7 7 H 1.08916 * 109.66424 * 33.10943 * 6 5 4 8 8 C 1.53120 * 109.38747 * 153.04093 * 6 5 4 9 9 C 1.52950 * 109.01323 * 272.70543 * 6 5 4 10 10 N 1.45274 * 111.50204 * 31.84447 * 9 6 5 11 11 C 1.45833 * 114.45932 * 60.72254 * 10 9 6 12 12 H 1.10406 * 108.16293 * 158.17793 * 11 10 9 13 13 C 1.50508 * 111.57086 * 40.11175 * 11 10 9 14 14 H 1.08008 * 120.00207 * 240.00165 * 13 11 10 15 15 C 1.37876 * 119.99918 * 60.00224 * 13 11 10 16 16 N 1.31515 * 120.00233 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99851 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46942 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47193 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.46416 * 239.99648 * 17 15 13 21 21 C 1.32697 * 117.18197 * 270.23557 * 4 3 2 22 22 O 1.21816 * 117.23840 * 1.69725 * 21 4 3 23 23 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 27 27 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.09139 * 109.07948 * 348.04627 * 5 4 3 31 31 H 1.08813 * 109.65302 * 107.43342 * 5 4 3 32 32 H 1.08998 * 109.46662 * 60.00463 * 8 6 5 33 33 H 1.09002 * 109.46935 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47427 * 299.99978 * 8 6 5 35 35 H 1.08828 * 109.91360 * 156.02234 * 9 6 5 36 36 H 1.10118 * 108.02847 * 272.50849 * 9 6 5 37 37 H 1.00364 * 113.00817 * 289.64918 * 10 9 6 38 38 H 0.96995 * 119.99907 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5075 1.4423 -0.0006 5 6 4.1718 1.4425 -1.3004 6 6 5.2649 0.3712 -1.3397 7 1 4.9647 -0.4811 -0.7317 8 6 5.4767 -0.0861 -2.7856 9 6 6.5655 0.9662 -0.7976 10 7 6.3081 1.9697 0.2208 11 6 5.5972 1.4721 1.3928 12 1 5.7961 2.1595 2.2336 13 6 6.0854 0.1072 1.7980 14 1 5.4007 -0.7278 1.8163 15 6 7.4068 -0.0770 2.1458 16 7 8.2407 0.9397 2.1231 17 14 8.0129 -1.7712 2.6480 18 1 6.8863 -2.7369 2.5911 19 1 9.0870 -2.2078 1.7202 20 1 8.5471 -1.7153 4.0325 21 6 4.1142 1.4373 1.1795 22 8 3.4063 1.4010 2.1702 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.4357 1.2291 -2.0774 31 1 4.6118 2.4202 -1.4864 32 1 5.7793 0.7653 -3.3952 33 1 6.2544 -0.8493 -2.8150 34 1 4.5469 -0.5001 -3.1757 35 1 7.2080 0.1722 -0.4219 36 1 7.0975 1.4429 -1.6356 37 1 5.9070 2.8115 -0.1505 38 1 9.1704 0.8099 2.3674 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220404667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -37.746854 kcal Electronic energy + Delta-G solvation = -18753.936489 eV Core-core repulsion = 16017.078405 eV Total energy + Delta-G solvation = -2736.858085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81046 -36.52917 -35.35775 -33.26231 -32.07565 -31.41825 -27.55283 -26.53720 -25.33162 -24.53656 -22.67417 -21.13956 -19.45882 -18.55880 -16.53601 -15.91945 -15.81981 -15.30056 -14.51064 -14.33673 -14.13143 -13.56188 -13.26893 -12.90372 -12.72375 -12.49938 -12.17309 -11.76732 -11.72067 -11.53447 -11.28778 -11.14416 -10.93035 -10.84383 -10.69407 -10.45297 -10.30410 -10.17759 -9.73058 -9.28136 -8.81617 -8.45018 -8.05595 -6.83199 -5.99544 -4.11981 3.28006 3.36776 3.40270 3.64332 3.79920 4.43540 5.10779 5.15207 5.18815 5.22490 5.40900 5.46725 5.50445 5.56721 5.76908 5.81998 5.86322 5.89708 5.95800 6.04320 6.08141 6.17287 6.30135 6.35898 6.44659 6.52175 6.55217 6.96008 7.09680 7.13474 7.37043 7.77727 7.92457 8.29165 8.57905 8.82478 9.04333 9.23724 9.53760 11.05117 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.009235 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.422130 B = 3031.067076 C = 3402.214793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.612 5.612 5 C 0.126 3.874 6 C -0.147 4.147 7 H 0.080 0.920 8 C -0.137 4.137 9 C 0.112 3.888 10 N -0.682 5.682 11 C 0.233 3.767 12 H 0.069 0.931 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.082 3.918 16 N -0.846 5.846 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.493 3.507 22 O -0.575 6.575 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.316 0.684 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 0.045 -10.108 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.018 4.018 4 N -0.344 5.344 5 C 0.002 3.998 6 C -0.169 4.169 7 H 0.098 0.902 8 C -0.195 4.195 9 C -0.019 4.019 10 N -0.313 5.313 11 C 0.123 3.877 12 H 0.087 0.913 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.125 4.125 16 N -0.481 5.481 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.283 3.717 22 O -0.454 6.454 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.136 0.864 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.284 0.005 -9.253 11.776 hybrid contribution -0.489 -1.019 -0.234 1.155 sum -7.773 -1.015 -9.486 12.306 Atomic orbital electron populations 1.21678 0.95815 1.01387 1.01469 1.21829 0.95386 0.97871 1.02458 1.21503 0.81678 0.96567 1.02002 1.47609 1.06041 1.74383 1.06404 1.21415 0.95156 0.99069 0.84127 1.22470 0.98435 0.99205 0.96746 0.90172 1.21778 1.00961 1.00870 0.95896 1.21286 0.93301 0.95572 0.91722 1.57165 1.58120 1.06678 1.09312 1.18985 0.79710 0.98917 0.90124 0.91315 1.20479 0.94834 0.92492 1.47863 0.92583 1.24891 0.96673 0.96485 0.94461 1.70115 1.03935 1.29407 1.44602 0.86629 0.78805 0.84752 0.78425 1.19780 1.20892 1.20803 1.22808 0.94601 0.72981 0.81360 1.90691 1.64976 1.51288 1.38401 0.92909 0.92638 0.93107 0.92459 0.91327 0.90129 0.91948 0.91413 0.92410 0.93016 0.92479 0.93602 0.90051 0.94407 0.86353 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.15 0.37 -1.39 16 2 C -0.14 -2.08 6.24 -26.74 -0.17 -2.25 16 3 C 0.11 1.71 4.98 -3.90 -0.02 1.69 16 4 N -0.61 -11.44 2.64 -174.69 -0.46 -11.91 16 5 C 0.13 1.97 5.21 -4.27 -0.02 1.94 16 6 C -0.15 -2.49 2.47 -90.53 -0.22 -2.71 16 7 H 0.08 1.60 7.81 -51.98 -0.41 1.20 16 8 C -0.14 -1.81 8.87 37.22 0.33 -1.48 16 9 C 0.11 2.21 5.24 -4.73 -0.02 2.19 16 10 N -0.68 -15.04 5.51 -110.76 -0.61 -15.65 16 11 C 0.23 5.85 2.33 -71.09 -0.17 5.69 16 12 H 0.07 1.98 8.24 -51.12 -0.42 1.55 16 13 C -0.52 -14.08 6.95 -34.53 -0.24 -14.32 16 14 H 0.06 1.59 7.75 -52.48 -0.41 1.19 16 15 C 0.08 2.21 4.52 -17.82 -0.08 2.13 16 16 N -0.85 -23.58 12.84 55.43 0.71 -22.87 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.49 11.54 6.45 -12.31 -0.08 11.47 16 22 O -0.57 -15.22 16.02 5.09 0.08 -15.14 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 29 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.07 0.89 7.40 -51.85 -0.38 0.50 16 31 H 0.06 0.86 6.63 -52.03 -0.34 0.52 16 32 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.08 1.88 6.63 -52.03 -0.35 1.54 16 36 H 0.04 0.67 7.83 -51.29 -0.40 0.27 16 37 H 0.32 6.26 7.22 -39.51 -0.29 5.97 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -30.09 298.85 -7.40 -37.49 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.28 Total: 4.62 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.32 Total: 2.97 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.36 Total: -50.43 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.09 -7.40 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220404667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.253 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds