Wall clock time and date at job start Mon Mar 30 2020 03:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 N 1.46501 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.47250 * 120.07276 * 90.00165 * 4 3 2 6 6 C 1.53113 * 108.40152 * 249.97042 * 5 4 3 7 7 H 1.09000 * 109.21948 * 34.74831 * 6 5 4 8 8 C 1.53004 * 109.21857 * 154.08606 * 6 5 4 9 9 C 1.51684 * 110.75620 * 274.41604 * 6 5 4 10 10 N 1.45749 * 113.93507 * 66.76674 * 9 6 5 11 11 C 1.46880 * 112.44222 * 292.27773 * 10 9 6 12 12 H 1.08999 * 109.60628 * 205.54272 * 11 10 9 13 13 C 1.50696 * 109.60330 * 325.86756 * 11 10 9 14 14 H 1.08005 * 119.99982 * 354.53923 * 13 11 10 15 15 C 1.37875 * 120.00079 * 174.54304 * 13 11 10 16 16 N 1.31512 * 120.00128 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99781 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47288 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47001 * 119.99846 * 17 15 13 20 20 H 1.48499 * 109.46996 * 239.99995 * 17 15 13 21 21 C 1.33603 * 120.07420 * 269.72200 * 4 3 2 22 22 O 1.21285 * 119.88670 * 0.53678 * 21 4 3 23 23 H 1.09004 * 109.47182 * 300.00411 * 1 2 3 24 24 H 1.09006 * 109.47169 * 59.99614 * 1 2 3 25 25 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46923 * 240.00074 * 2 1 3 27 27 H 1.08996 * 109.47083 * 120.00220 * 2 1 3 28 28 H 1.09006 * 109.47303 * 300.00305 * 3 2 1 29 29 H 1.09004 * 109.47317 * 59.99671 * 3 2 1 30 30 H 1.09002 * 109.68071 * 9.69895 * 5 4 3 31 31 H 1.09000 * 109.67655 * 130.21034 * 5 4 3 32 32 H 1.08998 * 109.47099 * 60.00560 * 8 6 5 33 33 H 1.08999 * 109.46743 * 180.02562 * 8 6 5 34 34 H 1.08996 * 109.47000 * 300.00330 * 8 6 5 35 35 H 1.08996 * 108.59183 * 187.91880 * 9 6 5 36 36 H 1.09001 * 108.59044 * 305.61716 * 9 6 5 37 37 H 1.00895 * 111.00607 * 57.30428 * 10 9 6 38 38 H 0.96993 * 120.00027 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2434 1.4422 -1.2734 6 6 4.9163 0.0772 -1.4418 7 1 4.2738 -0.6943 -1.0175 8 6 5.1212 -0.2028 -2.9320 9 6 6.2603 0.0500 -0.7392 10 7 6.1706 0.1428 0.7126 11 6 5.6881 1.4553 1.1618 12 1 6.0490 1.6517 2.1715 13 6 6.1912 2.5257 0.2280 14 1 6.8798 2.2711 -0.5642 15 6 5.7727 3.8300 0.3850 16 7 4.9339 4.1399 1.3494 17 14 6.3970 5.1569 -0.7722 18 1 7.3237 4.5535 -1.7632 19 1 5.2482 5.7760 -1.4810 20 1 7.1156 6.1961 0.0081 21 6 4.1741 1.4482 1.1571 22 8 3.5665 1.4436 2.2068 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.5522 1.6151 -2.0983 31 1 5.0008 2.2260 -1.2587 32 1 5.7541 0.5725 -3.3637 33 1 5.5997 -1.1742 -3.0567 34 1 4.1553 -0.2064 -3.4371 35 1 6.7686 -0.8789 -0.9973 36 1 6.8602 0.8837 -1.1042 37 1 5.6001 -0.6000 1.0878 38 1 4.6398 5.0575 1.4600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220404803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:01 Heat of formation + Delta-G solvation = -34.633041 kcal Electronic energy + Delta-G solvation = -19114.041408 eV Core-core repulsion = 16377.318348 eV Total energy + Delta-G solvation = -2736.723060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54905 -36.32862 -35.11072 -33.12045 -32.42579 -31.56303 -27.57252 -26.08179 -25.37601 -24.34292 -22.44917 -20.98876 -19.75780 -18.14622 -17.20948 -15.53598 -15.34307 -14.95698 -14.59582 -14.24743 -13.97992 -13.55472 -13.09119 -12.79704 -12.64325 -12.27136 -12.03683 -11.85378 -11.58185 -11.51739 -11.15029 -11.12142 -10.91287 -10.86307 -10.80017 -10.50589 -10.24089 -10.05166 -9.94283 -9.31779 -8.67768 -8.50222 -7.52776 -7.25907 -6.21699 -4.24174 3.16653 3.26370 3.27711 4.06896 4.20024 4.27289 5.08729 5.29976 5.33559 5.35683 5.41849 5.48308 5.60674 5.72078 5.83684 6.00510 6.06765 6.07342 6.12773 6.23640 6.27201 6.32250 6.35666 6.53755 6.57037 6.62730 6.75387 6.77604 7.11804 7.29816 7.60014 7.72017 7.79533 8.03655 8.45198 8.66779 8.82200 9.31678 9.71109 10.84108 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.011314 C = 0.009723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.368281 B = 2474.266439 C = 2879.075564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.601 5.601 5 C 0.099 3.901 6 C -0.138 4.138 7 H 0.056 0.944 8 C -0.137 4.137 9 C 0.064 3.936 10 N -0.675 5.675 11 C 0.202 3.798 12 H 0.071 0.929 13 C -0.529 4.529 14 H 0.082 0.918 15 C 0.064 3.936 16 N -0.862 5.862 17 Si 0.892 3.108 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.526 3.474 22 O -0.577 6.577 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.128 0.872 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.321 0.679 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -6.326 -8.219 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.333 5.333 5 C -0.024 4.024 6 C -0.159 4.159 7 H 0.075 0.925 8 C -0.195 4.195 9 C -0.066 4.066 10 N -0.303 5.303 11 C 0.091 3.909 12 H 0.088 0.912 13 C -0.567 4.567 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.497 5.497 17 Si 0.718 3.282 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.206 1.206 21 C 0.314 3.686 22 O -0.455 6.455 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.059 -5.962 -7.464 10.031 hybrid contribution -0.924 0.806 -0.871 1.504 sum -3.983 -5.156 -8.335 10.580 Atomic orbital electron populations 1.21686 0.96024 1.01097 1.01587 1.21898 0.95269 0.98535 1.01783 1.21271 0.82195 0.95329 1.01788 1.47624 1.04365 1.74251 1.07067 1.22489 0.97073 0.98833 0.83973 1.22032 0.99563 0.98311 0.96030 0.92549 1.21707 1.00995 1.01095 0.95737 1.21604 0.95173 1.01634 0.88220 1.60277 1.56144 1.05171 1.08720 1.19684 0.85281 0.86686 0.99211 0.91162 1.21112 1.28516 0.91511 1.15518 0.90068 1.25096 0.94821 0.98669 0.95654 1.69980 1.30489 1.19472 1.29771 0.86529 0.78831 0.81971 0.80827 1.19238 1.20865 1.20617 1.22216 0.92717 0.71852 0.81766 1.90481 1.71410 1.51452 1.32183 0.92687 0.93058 0.93112 0.92538 0.91994 0.92376 0.90753 0.93157 0.85436 0.92466 0.93122 0.93397 0.93307 0.89111 0.86356 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.14 -2.20 6.26 -26.73 -0.17 -2.37 16 3 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 4 N -0.60 -13.02 2.47 -173.05 -0.43 -13.45 16 5 C 0.10 1.89 5.32 -3.57 -0.02 1.87 16 6 C -0.14 -2.29 2.70 -91.23 -0.25 -2.53 16 7 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 8 C -0.14 -1.81 8.99 37.16 0.33 -1.48 16 9 C 0.06 1.15 5.10 -5.11 -0.03 1.12 16 10 N -0.68 -14.13 6.70 -110.42 -0.74 -14.87 16 11 C 0.20 5.05 3.19 -69.68 -0.22 4.83 16 12 H 0.07 2.00 8.13 -51.93 -0.42 1.58 16 13 C -0.53 -13.17 4.93 -34.44 -0.17 -13.34 16 14 H 0.08 1.94 5.18 -52.48 -0.27 1.67 16 15 C 0.06 1.65 4.84 -17.82 -0.09 1.56 16 16 N -0.86 -24.32 12.11 55.43 0.67 -23.65 16 17 Si 0.89 19.81 29.53 -169.99 -5.02 14.79 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.53 13.31 4.91 -11.16 -0.05 13.25 16 22 O -0.58 -16.58 16.63 5.55 0.09 -16.48 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 29 H 0.07 1.62 7.40 -51.93 -0.38 1.23 16 30 H 0.05 0.86 7.53 -51.93 -0.39 0.47 16 31 H 0.13 2.77 4.18 -51.93 -0.22 2.55 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 1.75 5.19 -51.93 -0.27 1.48 16 37 H 0.32 6.44 8.52 -39.29 -0.33 6.10 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -29.47 293.85 -7.36 -36.83 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.05 Total: 8.80 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.31 Total: 3.61 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.50 Total: -51.97 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.09 Total: -16.48 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.47 -7.36 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220404803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.197 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds