Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 N 1.46501 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.47250 * 120.07276 * 90.00165 * 4 3 2 6 6 C 1.53113 * 108.40152 * 249.97042 * 5 4 3 7 7 H 1.09000 * 109.21948 * 34.74831 * 6 5 4 8 8 C 1.53004 * 109.21857 * 154.08606 * 6 5 4 9 9 C 1.51684 * 110.75620 * 274.41604 * 6 5 4 10 10 N 1.45749 * 113.93507 * 66.76674 * 9 6 5 11 11 C 1.46880 * 112.44222 * 292.27773 * 10 9 6 12 12 H 1.08999 * 109.60628 * 205.54272 * 11 10 9 13 13 C 1.50696 * 109.60330 * 325.86756 * 11 10 9 14 14 H 1.08005 * 119.99982 * 354.53923 * 13 11 10 15 15 C 1.37875 * 120.00079 * 174.54304 * 13 11 10 16 16 N 1.31512 * 120.00128 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99781 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47288 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47001 * 119.99846 * 17 15 13 20 20 H 1.48499 * 109.46996 * 239.99995 * 17 15 13 21 21 C 1.33603 * 120.07420 * 269.72200 * 4 3 2 22 22 O 1.21285 * 119.88670 * 0.53678 * 21 4 3 23 23 H 1.09004 * 109.47182 * 300.00411 * 1 2 3 24 24 H 1.09006 * 109.47169 * 59.99614 * 1 2 3 25 25 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46923 * 240.00074 * 2 1 3 27 27 H 1.08996 * 109.47083 * 120.00220 * 2 1 3 28 28 H 1.09006 * 109.47303 * 300.00305 * 3 2 1 29 29 H 1.09004 * 109.47317 * 59.99671 * 3 2 1 30 30 H 1.09002 * 109.68071 * 9.69895 * 5 4 3 31 31 H 1.09000 * 109.67655 * 130.21034 * 5 4 3 32 32 H 1.08998 * 109.47099 * 60.00560 * 8 6 5 33 33 H 1.08999 * 109.46743 * 180.02562 * 8 6 5 34 34 H 1.08996 * 109.47000 * 300.00330 * 8 6 5 35 35 H 1.08996 * 108.59183 * 187.91880 * 9 6 5 36 36 H 1.09001 * 108.59044 * 305.61716 * 9 6 5 37 37 H 1.00895 * 111.00607 * 57.30428 * 10 9 6 38 38 H 0.96993 * 120.00027 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2434 1.4422 -1.2734 6 6 4.9163 0.0772 -1.4418 7 1 4.2738 -0.6943 -1.0175 8 6 5.1212 -0.2028 -2.9320 9 6 6.2603 0.0500 -0.7392 10 7 6.1706 0.1428 0.7126 11 6 5.6881 1.4553 1.1618 12 1 6.0490 1.6517 2.1715 13 6 6.1912 2.5257 0.2280 14 1 6.8798 2.2711 -0.5642 15 6 5.7727 3.8300 0.3850 16 7 4.9339 4.1399 1.3494 17 14 6.3970 5.1569 -0.7722 18 1 7.3237 4.5535 -1.7632 19 1 5.2482 5.7760 -1.4810 20 1 7.1156 6.1961 0.0081 21 6 4.1741 1.4482 1.1571 22 8 3.5665 1.4436 2.2068 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.5522 1.6151 -2.0983 31 1 5.0008 2.2260 -1.2587 32 1 5.7541 0.5725 -3.3637 33 1 5.5997 -1.1742 -3.0567 34 1 4.1553 -0.2064 -3.4371 35 1 6.7686 -0.8789 -0.9973 36 1 6.8602 0.8837 -1.1042 37 1 5.6001 -0.6000 1.0878 38 1 4.6398 5.0575 1.4600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220404803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = -55.485759 kcal Electronic energy + Delta-G solvation = -19114.945649 eV Core-core repulsion = 16377.318348 eV Total energy + Delta-G solvation = -2737.627301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32153 -38.08381 -36.75842 -34.90592 -33.98383 -33.17600 -29.33371 -27.43725 -27.08236 -25.96588 -24.01499 -22.48534 -21.28705 -19.91011 -19.02201 -17.25998 -17.14789 -16.79963 -16.21463 -15.69743 -15.59798 -15.10717 -14.67113 -14.38266 -14.09782 -13.84120 -13.74698 -13.26881 -12.95427 -12.87650 -12.79681 -12.64525 -12.55942 -12.36949 -12.20875 -12.03848 -11.80673 -11.61353 -11.52645 -11.10074 -10.61833 -10.41715 -9.28020 -9.00852 -8.21120 -6.28635 1.40271 1.44239 1.55264 2.16917 2.36377 2.54816 3.11675 3.71344 3.92211 4.00761 4.11349 4.17436 4.31308 4.36814 4.50584 4.59801 4.73788 4.79176 4.84976 4.92144 4.96257 5.08074 5.09816 5.18451 5.22601 5.26245 5.29622 5.35245 5.44780 5.67183 5.67552 5.83835 6.06345 6.24180 6.66949 6.80060 6.94501 7.31391 7.78269 8.85545 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.011314 C = 0.009723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.368281 B = 2474.266439 C = 2879.075564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.113 3.887 4 N -0.598 5.598 5 C 0.092 3.908 6 C -0.128 4.128 7 H 0.054 0.946 8 C -0.129 4.129 9 C 0.061 3.939 10 N -0.676 5.676 11 C 0.203 3.797 12 H 0.018 0.982 13 C -0.519 4.519 14 H 0.096 0.904 15 C 0.015 3.985 16 N -0.909 5.909 17 Si 0.958 3.042 18 H -0.246 1.246 19 H -0.281 1.281 20 H -0.289 1.289 21 C 0.522 3.478 22 O -0.627 6.627 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.324 0.676 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -7.383 -11.755 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.328 5.328 5 C -0.030 4.030 6 C -0.150 4.150 7 H 0.073 0.927 8 C -0.188 4.188 9 C -0.068 4.068 10 N -0.304 5.304 11 C 0.091 3.909 12 H 0.036 0.964 13 C -0.556 4.556 14 H 0.114 0.886 15 C -0.186 4.186 16 N -0.546 5.546 17 Si 0.783 3.217 18 H -0.169 1.169 19 H -0.207 1.207 20 H -0.215 1.215 21 C 0.311 3.689 22 O -0.509 6.509 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.098 -7.051 -11.073 13.488 hybrid contribution -0.889 1.083 0.232 1.420 sum -3.987 -5.968 -10.841 13.002 Atomic orbital electron populations 1.21653 0.93437 1.02629 1.02079 1.21767 0.97420 0.95835 1.01220 1.21460 0.80710 0.97551 1.01253 1.47678 1.05608 1.72554 1.06962 1.22612 0.97192 0.99856 0.83329 1.21899 0.98023 0.96420 0.98621 0.92749 1.21657 1.02301 1.02266 0.92538 1.21721 0.96365 1.02634 0.86049 1.60180 1.55827 1.03312 1.11131 1.19385 0.85528 0.89022 0.96938 0.96401 1.21345 1.27822 0.91355 1.15097 0.88643 1.25903 0.94825 1.00988 0.96931 1.70173 1.32697 1.19500 1.32266 0.85485 0.78430 0.78800 0.79015 1.16870 1.20736 1.21529 1.22182 0.92877 0.71623 0.82205 1.90439 1.72225 1.54100 1.34160 0.93706 0.91094 0.91061 0.90686 0.94814 0.89733 0.94361 0.90278 0.87740 0.92006 0.91261 0.91802 0.90327 0.90174 0.85974 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.91 71.98 0.71 -2.66 16 2 C -0.12 -3.83 6.26 30.59 0.19 -3.64 16 3 C 0.11 4.31 5.41 86.38 0.47 4.78 16 4 N -0.60 -25.83 2.47 -820.44 -2.03 -27.86 16 5 C 0.09 3.30 5.32 86.27 0.46 3.76 16 6 C -0.13 -3.86 2.70 -11.19 -0.03 -3.89 16 7 H 0.05 1.69 8.02 -2.39 -0.02 1.67 16 8 C -0.13 -2.79 8.99 71.98 0.65 -2.14 16 9 C 0.06 2.07 5.10 86.09 0.44 2.51 16 10 N -0.68 -28.32 6.70 -503.27 -3.37 -31.69 16 11 C 0.20 10.49 3.19 43.65 0.14 10.63 16 12 H 0.02 1.11 8.13 -2.39 -0.02 1.09 16 13 C -0.52 -25.95 4.93 25.60 0.13 -25.83 16 14 H 0.10 4.44 5.18 -2.91 -0.02 4.42 16 15 C 0.02 0.78 4.84 84.65 0.41 1.19 16 16 N -0.91 -53.24 12.11 21.45 0.26 -52.98 16 17 Si 0.96 40.50 29.53 68.60 2.03 42.53 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.52 27.40 4.91 88.06 0.43 27.83 16 22 O -0.63 -38.17 16.63 -3.04 -0.05 -38.22 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.73 7.88 -2.38 -0.02 2.71 16 29 H 0.04 1.72 7.40 -2.39 -0.02 1.71 16 30 H 0.08 2.40 7.53 -2.39 -0.02 2.38 16 31 H 0.11 4.35 4.18 -2.39 -0.01 4.34 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 35 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 36 H 0.08 2.90 5.19 -2.39 -0.01 2.89 16 37 H 0.32 13.11 8.52 -89.70 -0.76 12.35 16 38 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -67.68 293.85 1.11 -66.57 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.28 Total: 29.11 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.00 Total: 12.55 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -5.14 Total: -112.53 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.05 Total: -38.22 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -67.68 1.11 -66.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220404803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.080 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds