Wall clock time and date at job start Mon Mar 30 2020 03:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 N 1.46908 * 109.46705 * 182.91327 * 3 2 1 5 5 C 1.45752 * 110.99640 * 289.60158 * 4 3 2 6 6 C 1.51686 * 113.93567 * 192.72843 * 5 4 3 7 7 H 1.09007 * 109.22302 * 53.55764 * 6 5 4 8 8 C 1.53003 * 109.21998 * 172.94158 * 6 5 4 9 9 C 1.53107 * 110.75878 * 293.22991 * 6 5 4 10 10 N 1.47242 * 108.40204 * 85.59397 * 9 6 5 11 11 C 1.33615 * 119.84133 * 290.01291 * 10 9 6 12 12 O 1.21293 * 119.88021 * 179.49765 * 11 10 9 13 13 C 1.46877 * 111.00416 * 55.42614 * 4 3 2 14 14 H 1.09003 * 109.59718 * 269.12821 * 13 4 3 15 15 C 1.50702 * 109.60116 * 29.44464 * 13 4 3 16 16 H 1.07999 * 119.99975 * 5.67636 * 15 13 4 17 17 C 1.37875 * 119.99881 * 185.68041 * 15 13 4 18 18 N 1.31513 * 120.00137 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99672 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46937 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47416 * 299.99999 * 19 17 15 22 22 H 1.48503 * 109.47110 * 60.00498 * 19 17 15 23 23 H 1.08999 * 109.47661 * 300.00086 * 1 2 3 24 24 H 1.09003 * 109.47310 * 60.00246 * 1 2 3 25 25 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47207 * 240.00156 * 2 1 3 27 27 H 1.09003 * 109.47310 * 119.99754 * 2 1 3 28 28 H 1.08991 * 109.47400 * 62.91402 * 3 2 1 29 29 H 1.08999 * 109.47270 * 302.90750 * 3 2 1 30 30 H 1.09003 * 108.59309 * 313.87769 * 5 4 3 31 31 H 1.08994 * 108.59112 * 71.58117 * 5 4 3 32 32 H 1.09004 * 109.46862 * 60.00275 * 8 6 5 33 33 H 1.08997 * 109.47164 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47480 * 299.99958 * 8 6 5 35 35 H 1.09007 * 109.67953 * 205.32064 * 9 6 5 36 36 H 1.09004 * 109.67659 * 325.86238 * 9 6 5 37 37 H 0.97004 * 120.07963 * 110.03800 * 10 9 6 38 38 H 0.96995 * 120.00229 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5073 1.4431 -0.0704 5 6 4.0902 0.9652 1.1771 6 6 5.5806 1.2201 1.2974 7 1 5.7785 2.2785 1.1276 8 6 6.0445 0.8406 2.7051 9 6 6.3575 0.3912 0.2710 10 7 6.3974 1.1394 -0.9965 11 6 5.2810 1.2902 -1.7150 12 8 5.3111 1.9142 -2.7546 13 6 3.9787 0.6844 -1.2364 14 1 4.1384 -0.3565 -0.9550 15 6 2.9518 0.7589 -2.3368 16 1 2.0818 1.3884 -2.2219 17 6 3.1230 0.0233 -3.4903 18 7 4.1821 -0.7437 -3.6301 19 14 1.8497 0.1151 -4.8541 20 1 2.2643 -0.7624 -5.9782 21 1 0.5337 -0.3348 -4.3337 22 1 1.7395 1.5158 -5.3349 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7199 1.9411 0.9149 29 1 1.6346 1.9712 -0.8628 30 1 3.5852 1.4580 2.0079 31 1 3.9138 -0.1076 1.2544 32 1 5.8386 -0.2149 2.8833 33 1 7.1153 1.0226 2.7962 34 1 5.5100 1.4439 3.4389 35 1 7.3730 0.2215 0.6291 36 1 5.8574 -0.5651 0.1172 37 1 7.2322 1.5217 -1.3094 38 1 4.3027 -1.2609 -4.4417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220405399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:05 Heat of formation + Delta-G solvation = -31.896947 kcal Electronic energy + Delta-G solvation = -18912.062815 eV Core-core repulsion = 16175.458401 eV Total energy + Delta-G solvation = -2736.604414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.34543 -36.68416 -35.56140 -32.46660 -32.35956 -31.47923 -27.69468 -26.19111 -25.45101 -23.91319 -22.37886 -20.77822 -19.57045 -18.58744 -16.44141 -16.09517 -15.69128 -14.99087 -14.30837 -14.10921 -13.93193 -13.58668 -13.16019 -12.93545 -12.53828 -12.41313 -12.15906 -11.75589 -11.52597 -11.25630 -11.14260 -10.97050 -10.79893 -10.70460 -10.59755 -10.43092 -10.33244 -9.78095 -9.69387 -9.00270 -8.47042 -8.31334 -7.98501 -7.14715 -6.04330 -4.03874 3.36024 3.41146 3.45328 4.15799 4.36237 4.48919 4.89354 5.16226 5.22397 5.37624 5.60583 5.69928 5.75384 5.81014 5.84236 5.90831 6.03298 6.05640 6.16154 6.17916 6.28980 6.35904 6.40206 6.44147 6.59518 6.64779 6.71147 6.99169 7.09667 7.37365 7.63284 7.86713 7.99066 8.11305 8.36690 8.63799 8.97016 9.60396 9.85244 11.07567 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.011310 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.905423 B = 2474.991979 C = 3418.518018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.166 4.166 3 C 0.080 3.920 4 N -0.542 5.542 5 C 0.066 3.934 6 C -0.111 4.111 7 H 0.079 0.921 8 C -0.140 4.140 9 C 0.122 3.878 10 N -0.747 5.747 11 C 0.542 3.458 12 O -0.534 6.534 13 C 0.213 3.787 14 H 0.029 0.971 15 C -0.507 4.507 16 H 0.075 0.925 17 C 0.076 3.924 18 N -0.883 5.883 19 Si 0.897 3.103 20 H -0.289 1.289 21 H -0.276 1.276 22 H -0.275 1.275 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.379 0.621 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -0.035 11.545 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.204 4.204 3 C -0.048 4.048 4 N -0.267 5.267 5 C -0.063 4.063 6 C -0.131 4.131 7 H 0.098 0.902 8 C -0.199 4.199 9 C -0.003 4.003 10 N -0.402 5.402 11 C 0.329 3.671 12 O -0.407 6.407 13 C 0.103 3.897 14 H 0.047 0.953 15 C -0.545 4.545 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.520 5.520 19 Si 0.725 3.275 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.200 1.200 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.213 0.787 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.547 0.565 10.815 10.843 hybrid contribution -0.319 -0.797 -0.704 1.110 sum 0.228 -0.232 10.111 10.116 Atomic orbital electron populations 1.21631 0.97022 1.00492 1.00734 1.22372 0.95161 0.99663 1.03249 1.21999 0.86749 0.95475 1.00549 1.61028 1.07191 1.56439 1.02018 1.21559 0.94020 0.97687 0.93014 1.21450 0.95576 1.01461 0.94633 0.90238 1.21770 1.00734 1.01400 0.95983 1.21588 0.99700 0.94961 0.84087 1.46287 1.11726 1.58449 1.23724 1.21548 0.85273 0.77693 0.82607 1.90519 1.85702 1.40764 1.23738 1.19453 0.90519 0.91299 0.88386 0.95319 1.20964 1.05990 1.26975 1.00584 0.90739 1.24893 0.95342 0.94680 0.97960 1.69881 1.27088 1.27556 1.27434 0.86570 0.81195 0.78224 0.81517 1.21427 1.20193 1.20009 0.94105 0.92813 0.93784 0.87781 0.94162 0.93582 0.89656 0.92262 0.95792 0.92722 0.92664 0.92706 0.91093 0.91457 0.78735 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.86 16 2 C -0.17 -3.06 5.15 -26.73 -0.14 -3.20 16 3 C 0.08 1.53 4.77 -3.82 -0.02 1.51 16 4 N -0.54 -11.34 4.53 -230.84 -1.05 -12.39 16 5 C 0.07 1.12 3.79 -5.11 -0.02 1.10 16 6 C -0.11 -1.67 2.70 -91.23 -0.25 -1.91 16 7 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 8 C -0.14 -1.56 9.00 37.16 0.33 -1.23 16 9 C 0.12 1.99 5.93 -3.58 -0.02 1.97 16 10 N -0.75 -15.29 5.33 -59.75 -0.32 -15.60 16 11 C 0.54 13.95 6.63 -11.17 -0.07 13.87 16 12 O -0.53 -16.09 16.49 5.55 0.09 -16.00 16 13 C 0.21 5.26 0.91 -69.69 -0.06 5.20 16 14 H 0.03 0.77 6.55 -51.93 -0.34 0.43 16 15 C -0.51 -13.71 5.26 -34.44 -0.18 -13.89 16 16 H 0.07 1.98 5.14 -52.49 -0.27 1.71 16 17 C 0.08 2.13 4.97 -17.82 -0.09 2.04 16 18 N -0.88 -25.90 12.63 55.43 0.70 -25.20 16 19 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 2.32 5.45 -51.93 -0.28 2.03 16 27 H 0.04 0.70 7.08 -51.93 -0.37 0.33 16 28 H 0.05 0.77 7.83 -51.93 -0.41 0.37 16 29 H 0.09 1.79 5.86 -51.93 -0.30 1.49 16 30 H 0.06 0.90 7.74 -51.93 -0.40 0.50 16 31 H 0.02 0.41 6.81 -51.93 -0.35 0.06 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 37 H 0.38 7.08 8.92 -40.82 -0.36 6.72 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -31.92 290.02 -7.31 -39.23 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.94 Total: 5.01 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.15 Total: 3.59 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.66 Total: -53.19 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.92 -7.31 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220405399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.334 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds