Wall clock time and date at job start Mon Mar 30 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 N 1.46908 * 109.46705 * 182.91327 * 3 2 1 5 5 C 1.45752 * 110.99640 * 289.60158 * 4 3 2 6 6 C 1.51686 * 113.93567 * 192.72843 * 5 4 3 7 7 H 1.09007 * 109.22302 * 53.55764 * 6 5 4 8 8 C 1.53003 * 109.21998 * 172.94158 * 6 5 4 9 9 C 1.53107 * 110.75878 * 293.22991 * 6 5 4 10 10 N 1.47242 * 108.40204 * 85.59397 * 9 6 5 11 11 C 1.33615 * 119.84133 * 290.01291 * 10 9 6 12 12 O 1.21293 * 119.88021 * 179.49765 * 11 10 9 13 13 C 1.46877 * 111.00416 * 55.42614 * 4 3 2 14 14 H 1.09003 * 109.59718 * 269.12821 * 13 4 3 15 15 C 1.50702 * 109.60116 * 29.44464 * 13 4 3 16 16 H 1.07999 * 119.99975 * 5.67636 * 15 13 4 17 17 C 1.37875 * 119.99881 * 185.68041 * 15 13 4 18 18 N 1.31513 * 120.00137 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99672 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46937 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47416 * 299.99999 * 19 17 15 22 22 H 1.48503 * 109.47110 * 60.00498 * 19 17 15 23 23 H 1.08999 * 109.47661 * 300.00086 * 1 2 3 24 24 H 1.09003 * 109.47310 * 60.00246 * 1 2 3 25 25 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47207 * 240.00156 * 2 1 3 27 27 H 1.09003 * 109.47310 * 119.99754 * 2 1 3 28 28 H 1.08991 * 109.47400 * 62.91402 * 3 2 1 29 29 H 1.08999 * 109.47270 * 302.90750 * 3 2 1 30 30 H 1.09003 * 108.59309 * 313.87769 * 5 4 3 31 31 H 1.08994 * 108.59112 * 71.58117 * 5 4 3 32 32 H 1.09004 * 109.46862 * 60.00275 * 8 6 5 33 33 H 1.08997 * 109.47164 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47480 * 299.99958 * 8 6 5 35 35 H 1.09007 * 109.67953 * 205.32064 * 9 6 5 36 36 H 1.09004 * 109.67659 * 325.86238 * 9 6 5 37 37 H 0.97004 * 120.07963 * 110.03800 * 10 9 6 38 38 H 0.96995 * 120.00229 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5073 1.4431 -0.0704 5 6 4.0902 0.9652 1.1771 6 6 5.5806 1.2201 1.2974 7 1 5.7785 2.2785 1.1276 8 6 6.0445 0.8406 2.7051 9 6 6.3575 0.3912 0.2710 10 7 6.3974 1.1394 -0.9965 11 6 5.2810 1.2902 -1.7150 12 8 5.3111 1.9142 -2.7546 13 6 3.9787 0.6844 -1.2364 14 1 4.1384 -0.3565 -0.9550 15 6 2.9518 0.7589 -2.3368 16 1 2.0818 1.3884 -2.2219 17 6 3.1230 0.0233 -3.4903 18 7 4.1821 -0.7437 -3.6301 19 14 1.8497 0.1151 -4.8541 20 1 2.2643 -0.7624 -5.9782 21 1 0.5337 -0.3348 -4.3337 22 1 1.7395 1.5158 -5.3349 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7199 1.9411 0.9149 29 1 1.6346 1.9712 -0.8628 30 1 3.5852 1.4580 2.0079 31 1 3.9138 -0.1076 1.2544 32 1 5.8386 -0.2149 2.8833 33 1 7.1153 1.0226 2.7962 34 1 5.5100 1.4439 3.4389 35 1 7.3730 0.2215 0.6291 36 1 5.8574 -0.5651 0.1172 37 1 7.2322 1.5217 -1.3094 38 1 4.3027 -1.2609 -4.4417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220405399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:04 Heat of formation + Delta-G solvation = -56.334272 kcal Electronic energy + Delta-G solvation = -18913.122497 eV Core-core repulsion = 16175.458401 eV Total energy + Delta-G solvation = -2737.664095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04990 -38.49464 -37.08159 -34.50205 -33.92906 -32.98110 -29.53434 -27.59180 -26.80899 -25.71755 -23.96132 -22.26544 -20.98011 -20.40949 -18.28546 -17.88046 -17.41760 -16.85717 -15.94064 -15.84492 -15.43774 -15.04408 -14.62197 -14.46533 -14.25283 -13.99951 -13.71078 -13.20598 -12.91601 -12.77817 -12.68036 -12.56158 -12.43414 -12.37065 -12.07481 -11.99551 -11.68897 -11.50092 -11.23062 -10.87432 -10.57689 -10.31402 -9.72476 -8.82765 -8.17160 -6.18950 1.37073 1.42908 1.47045 2.25605 2.41900 2.75884 3.26120 3.40530 3.93728 4.00153 4.24765 4.31228 4.45896 4.55644 4.59720 4.64884 4.68135 4.77713 4.85861 4.88434 4.97167 4.99669 5.09918 5.17814 5.23580 5.32946 5.37339 5.51246 5.53567 5.73863 5.78988 5.87856 6.26908 6.34583 6.63749 6.79362 6.93288 7.47621 7.91522 8.94704 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.011310 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.905423 B = 2474.991979 C = 3418.518018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.157 4.157 3 C 0.079 3.921 4 N -0.554 5.554 5 C 0.061 3.939 6 C -0.106 4.106 7 H 0.068 0.932 8 C -0.131 4.131 9 C 0.116 3.884 10 N -0.738 5.738 11 C 0.533 3.467 12 O -0.592 6.592 13 C 0.223 3.777 14 H 0.007 0.993 15 C -0.507 4.507 16 H 0.073 0.927 17 C 0.023 3.977 18 N -0.917 5.917 19 Si 0.949 3.051 20 H -0.288 1.288 21 H -0.256 1.256 22 H -0.283 1.283 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.388 0.612 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 0.074 14.135 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C -0.048 4.048 4 N -0.279 5.279 5 C -0.067 4.067 6 C -0.126 4.126 7 H 0.086 0.914 8 C -0.189 4.189 9 C -0.008 4.008 10 N -0.391 5.391 11 C 0.321 3.679 12 O -0.470 6.470 13 C 0.113 3.887 14 H 0.025 0.975 15 C -0.545 4.545 16 H 0.091 0.909 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.775 3.225 20 H -0.214 1.214 21 H -0.181 1.181 22 H -0.209 1.209 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.223 0.777 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.251 0.655 13.478 13.496 hybrid contribution -0.194 -0.810 -1.390 1.621 sum 0.057 -0.155 12.087 12.088 Atomic orbital electron populations 1.21587 0.94801 1.01408 1.01576 1.22183 0.97101 0.98677 1.01632 1.22020 0.85855 0.95944 1.00970 1.61013 1.08395 1.56013 1.02492 1.21752 0.95590 0.97746 0.91639 1.21418 0.94030 1.00396 0.96719 0.91360 1.21705 1.02042 1.02095 0.93036 1.21937 1.02486 0.93844 0.82490 1.46168 1.10718 1.57576 1.24597 1.21710 0.86842 0.77141 0.82201 1.90476 1.86809 1.43561 1.26159 1.19120 0.89926 0.90339 0.89348 0.97549 1.21288 1.06324 1.25787 1.01114 0.90877 1.25628 0.97052 0.94845 1.00216 1.69997 1.28876 1.28924 1.27735 0.85751 0.80126 0.77540 0.79113 1.21381 1.18066 1.20853 0.91396 0.93806 0.92876 0.92140 0.92901 0.90292 0.92166 0.89713 0.96002 0.91919 0.90744 0.91356 0.86772 0.93200 0.77662 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.16 -5.66 5.15 30.59 0.16 -5.50 16 3 C 0.08 2.96 4.77 86.30 0.41 3.37 16 4 N -0.55 -22.88 4.53 -884.23 -4.01 -26.89 16 5 C 0.06 1.93 3.79 86.09 0.33 2.25 16 6 C -0.11 -2.89 2.70 -11.19 -0.03 -2.92 16 7 H 0.07 2.06 8.05 -2.38 -0.02 2.05 16 8 C -0.13 -2.34 9.00 71.98 0.65 -1.69 16 9 C 0.12 3.57 5.93 86.27 0.51 4.08 16 10 N -0.74 -30.01 5.33 -461.99 -2.46 -32.47 16 11 C 0.53 28.07 6.63 88.06 0.58 28.65 16 12 O -0.59 -36.89 16.49 -3.07 -0.05 -36.94 16 13 C 0.22 11.25 0.91 43.65 0.04 11.29 16 14 H 0.01 0.39 6.55 -2.39 -0.02 0.37 16 15 C -0.51 -28.22 5.26 25.60 0.13 -28.08 16 16 H 0.07 3.99 5.14 -2.91 -0.01 3.98 16 17 C 0.02 1.32 4.97 84.65 0.42 1.74 16 18 N -0.92 -55.72 12.63 21.45 0.27 -55.45 16 19 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 2.74 5.45 -2.39 -0.01 2.72 16 27 H 0.05 1.74 7.08 -2.39 -0.02 1.72 16 28 H 0.08 2.42 7.83 -2.39 -0.02 2.40 16 29 H 0.06 2.53 5.86 -2.39 -0.01 2.52 16 30 H 0.08 2.27 7.74 -2.39 -0.02 2.25 16 31 H 0.02 0.71 6.81 -2.39 -0.02 0.70 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 2.53 7.86 -2.38 -0.02 2.51 16 36 H 0.05 1.74 6.77 -2.39 -0.02 1.72 16 37 H 0.39 14.36 8.92 -92.71 -0.83 13.54 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.35 290.02 -0.08 -72.43 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.22 Total: 21.16 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 3.92 Total: 9.88 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -6.20 Total: -114.80 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.05 Total: -36.94 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.35 -0.08 -72.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220405399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.095 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds