Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46979 * 2 1 4 4 N 1.46503 * 109.46688 * 179.97438 * 3 2 1 5 5 C 1.47246 * 120.07487 * 90.00357 * 4 3 2 6 6 C 1.53117 * 108.39993 * 249.97040 * 5 4 3 7 7 C 1.51682 * 110.75076 * 274.41059 * 6 5 4 8 8 H 1.09000 * 108.59526 * 305.61415 * 7 6 5 9 9 C 1.53007 * 108.58958 * 187.77624 * 7 6 5 10 10 N 1.45758 * 113.93799 * 66.77189 * 7 6 5 11 11 C 1.46876 * 112.43528 * 292.27773 * 10 7 6 12 12 H 1.09006 * 109.59974 * 205.70347 * 11 10 7 13 13 C 1.50698 * 109.60621 * 326.02286 * 11 10 7 14 14 H 1.08006 * 119.99829 * 354.54447 * 13 11 10 15 15 C 1.37876 * 120.00236 * 174.54365 * 13 11 10 16 16 N 1.31514 * 120.00169 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00086 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47273 * 89.99777 * 17 15 13 19 19 H 1.48498 * 109.47256 * 210.00067 * 17 15 13 20 20 H 1.48506 * 109.46984 * 330.00136 * 17 15 13 21 21 C 1.33612 * 120.07734 * 269.71840 * 4 3 2 22 22 O 1.21284 * 119.88196 * 0.53981 * 21 4 3 23 23 H 1.08995 * 109.47301 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46919 * 300.00356 * 1 2 3 25 25 H 1.09001 * 109.47562 * 59.99852 * 1 2 3 26 26 H 1.08997 * 109.47156 * 239.99858 * 2 1 3 27 27 H 1.09004 * 109.47500 * 119.99383 * 2 1 3 28 28 H 1.08997 * 109.47293 * 59.99941 * 3 2 1 29 29 H 1.08993 * 109.46911 * 299.99816 * 3 2 1 30 30 H 1.08996 * 109.67829 * 9.69318 * 5 4 3 31 31 H 1.08994 * 109.68364 * 130.20564 * 5 4 3 32 32 H 1.08998 * 109.22213 * 34.73880 * 6 5 4 33 33 H 1.08996 * 109.21802 * 154.13270 * 6 5 4 34 34 H 1.08991 * 109.46784 * 60.00176 * 9 7 6 35 35 H 1.09002 * 109.47069 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46842 * 300.00076 * 9 7 6 37 37 H 1.00904 * 110.99954 * 167.26279 * 10 7 6 38 38 H 0.96997 * 119.99908 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2434 1.4424 -1.2733 6 6 4.9162 0.0773 -1.4418 7 6 6.2602 0.0502 -0.7391 8 1 6.8601 0.8839 -1.1042 9 6 6.9723 -1.2555 -1.0986 10 7 6.1705 0.1429 0.7127 11 6 5.6880 1.4554 1.1619 12 1 6.0513 1.6531 2.1704 13 6 6.1878 2.5254 0.2258 14 1 6.8746 2.2707 -0.5680 15 6 5.7684 3.8294 0.3825 16 7 4.9326 4.1397 1.3493 17 14 6.3875 5.1556 -0.7783 18 1 5.4710 5.2623 -1.9418 19 1 6.4341 6.4566 -0.0638 20 1 7.7498 4.8021 -1.2522 21 6 4.1741 1.4483 1.1571 22 8 3.5665 1.4438 2.2068 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8899 30 1 3.5522 1.6151 -2.0982 31 1 5.0007 2.2261 -1.2588 32 1 4.2738 -0.6942 -1.0174 33 1 5.0630 -0.1218 -2.5033 34 1 7.1166 -1.3054 -2.1777 35 1 7.9410 -1.2901 -0.6001 36 1 6.3663 -2.1012 -0.7734 37 1 7.0534 -0.0850 1.1448 38 1 4.6373 5.0571 1.4593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220407269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -32.211276 kcal Electronic energy + Delta-G solvation = -19029.375475 eV Core-core repulsion = 16292.757431 eV Total energy + Delta-G solvation = -2736.618044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28979 -36.38226 -34.95235 -32.98530 -32.44374 -30.73907 -28.54103 -26.24495 -25.35397 -23.36215 -22.72724 -20.98005 -19.54606 -17.95665 -16.92321 -15.74471 -15.33489 -14.92170 -14.47875 -14.10995 -13.93465 -13.53910 -13.01149 -12.54343 -12.50002 -12.31398 -12.07304 -11.71746 -11.51944 -11.38561 -11.29584 -11.04325 -10.84340 -10.75226 -10.59601 -10.35903 -10.15150 -10.00310 -9.70317 -9.63174 -8.74973 -8.30541 -7.37895 -7.20853 -6.18117 -4.27808 3.15016 3.24524 3.25156 4.20828 4.30625 4.36226 5.03289 5.27943 5.41645 5.46167 5.55858 5.63992 5.71461 5.87923 5.98782 6.04315 6.14469 6.21968 6.27689 6.32563 6.34896 6.44982 6.50618 6.55708 6.66669 6.77160 6.82373 6.84847 7.12705 7.26250 7.66091 7.77239 7.86960 8.09203 8.42095 8.69329 8.92170 9.30123 9.90662 10.82149 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.011848 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.769283 B = 2362.740942 C = 3053.691819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.599 5.599 5 C 0.094 3.906 6 C -0.118 4.118 7 C 0.086 3.914 8 H 0.057 0.943 9 C -0.149 4.149 10 N -0.686 5.686 11 C 0.201 3.799 12 H 0.061 0.939 13 C -0.562 4.562 14 H 0.078 0.922 15 C 0.070 3.930 16 N -0.858 5.858 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.575 3.425 22 O -0.582 6.582 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.334 0.666 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -6.223 -7.411 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.331 5.331 5 C -0.029 4.029 6 C -0.157 4.157 7 C -0.024 4.024 8 H 0.074 0.926 9 C -0.206 4.206 10 N -0.319 5.319 11 C 0.090 3.910 12 H 0.079 0.921 13 C -0.600 4.600 14 H 0.095 0.905 15 C -0.137 4.137 16 N -0.493 5.493 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.365 3.635 22 O -0.460 6.460 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.470 -6.326 -6.732 9.562 hybrid contribution 0.960 1.416 -0.871 1.920 sum -1.510 -4.910 -7.603 9.175 Atomic orbital electron populations 1.21692 0.96240 1.01005 1.01465 1.21897 0.94963 0.98588 1.02015 1.21242 0.82225 0.95335 1.01589 1.47475 1.04176 1.74503 1.06954 1.22381 0.97029 0.99331 0.84159 1.21723 0.96993 0.98525 0.98493 1.20906 0.96051 0.96059 0.89415 0.92581 1.21974 0.99855 0.98655 1.00159 1.59700 1.33579 1.31851 1.06758 1.19417 0.88603 0.85289 0.97733 0.92137 1.21479 1.29461 0.92623 1.16436 0.90483 1.25067 0.94636 0.98586 0.95384 1.69966 1.30217 1.19625 1.29456 0.86660 0.79446 0.81539 0.80944 1.20265 1.20928 1.19599 1.20778 0.90721 0.70569 0.81478 1.90464 1.71067 1.52166 1.32333 0.93189 0.92761 0.93155 0.92545 0.91756 0.90836 0.92542 0.93347 0.85813 0.92215 0.92299 0.93134 0.93384 0.92835 0.84861 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.15 0.37 -1.63 16 2 C -0.14 -2.30 6.26 -26.73 -0.17 -2.47 16 3 C 0.12 2.37 5.41 -4.04 -0.02 2.35 16 4 N -0.60 -13.44 2.47 -173.05 -0.43 -13.87 16 5 C 0.09 1.85 5.88 -3.57 -0.02 1.83 16 6 C -0.12 -2.07 5.10 -27.34 -0.14 -2.21 16 7 C 0.09 1.54 2.48 -68.99 -0.17 1.37 16 8 H 0.06 1.09 5.19 -51.93 -0.27 0.82 16 9 C -0.15 -2.15 9.21 37.16 0.34 -1.81 16 10 N -0.69 -14.19 6.19 -103.32 -0.64 -14.83 16 11 C 0.20 5.00 3.11 -69.69 -0.22 4.78 16 12 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 13 C -0.56 -13.87 4.92 -34.44 -0.17 -14.04 16 14 H 0.08 1.82 5.16 -52.48 -0.27 1.55 16 15 C 0.07 1.81 4.84 -17.82 -0.09 1.73 16 16 N -0.86 -24.19 12.11 55.43 0.67 -23.52 16 17 Si 0.89 19.74 29.52 -169.99 -5.02 14.72 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.57 15.01 5.18 -11.16 -0.06 14.95 16 22 O -0.58 -17.20 16.63 5.55 0.09 -17.11 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.63 7.40 -51.93 -0.38 1.25 16 29 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 30 H 0.05 0.84 7.79 -51.93 -0.40 0.43 16 31 H 0.12 2.74 4.16 -51.93 -0.22 2.53 16 32 H 0.06 1.10 8.02 -51.93 -0.42 0.68 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.33 6.29 8.55 -39.29 -0.34 5.96 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -29.98 294.27 -7.29 -37.27 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.06 Total: 8.04 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.34 Total: 4.86 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.40 Total: -52.22 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.09 Total: -17.11 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.98 -7.29 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220407269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.058 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds