Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46979 * 2 1 4 4 N 1.46503 * 109.46688 * 179.97438 * 3 2 1 5 5 C 1.47246 * 120.07487 * 90.00357 * 4 3 2 6 6 C 1.53117 * 108.39993 * 249.97040 * 5 4 3 7 7 C 1.51682 * 110.75076 * 274.41059 * 6 5 4 8 8 H 1.09000 * 108.59526 * 305.61415 * 7 6 5 9 9 C 1.53007 * 108.58958 * 187.77624 * 7 6 5 10 10 N 1.45758 * 113.93799 * 66.77189 * 7 6 5 11 11 C 1.46876 * 112.43528 * 292.27773 * 10 7 6 12 12 H 1.09006 * 109.59974 * 205.70347 * 11 10 7 13 13 C 1.50698 * 109.60621 * 326.02286 * 11 10 7 14 14 H 1.08006 * 119.99829 * 354.54447 * 13 11 10 15 15 C 1.37876 * 120.00236 * 174.54365 * 13 11 10 16 16 N 1.31514 * 120.00169 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00086 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47273 * 89.99777 * 17 15 13 19 19 H 1.48498 * 109.47256 * 210.00067 * 17 15 13 20 20 H 1.48506 * 109.46984 * 330.00136 * 17 15 13 21 21 C 1.33612 * 120.07734 * 269.71840 * 4 3 2 22 22 O 1.21284 * 119.88196 * 0.53981 * 21 4 3 23 23 H 1.08995 * 109.47301 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46919 * 300.00356 * 1 2 3 25 25 H 1.09001 * 109.47562 * 59.99852 * 1 2 3 26 26 H 1.08997 * 109.47156 * 239.99858 * 2 1 3 27 27 H 1.09004 * 109.47500 * 119.99383 * 2 1 3 28 28 H 1.08997 * 109.47293 * 59.99941 * 3 2 1 29 29 H 1.08993 * 109.46911 * 299.99816 * 3 2 1 30 30 H 1.08996 * 109.67829 * 9.69318 * 5 4 3 31 31 H 1.08994 * 109.68364 * 130.20564 * 5 4 3 32 32 H 1.08998 * 109.22213 * 34.73880 * 6 5 4 33 33 H 1.08996 * 109.21802 * 154.13270 * 6 5 4 34 34 H 1.08991 * 109.46784 * 60.00176 * 9 7 6 35 35 H 1.09002 * 109.47069 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46842 * 300.00076 * 9 7 6 37 37 H 1.00904 * 110.99954 * 167.26279 * 10 7 6 38 38 H 0.96997 * 119.99908 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2434 1.4424 -1.2733 6 6 4.9162 0.0773 -1.4418 7 6 6.2602 0.0502 -0.7391 8 1 6.8601 0.8839 -1.1042 9 6 6.9723 -1.2555 -1.0986 10 7 6.1705 0.1429 0.7127 11 6 5.6880 1.4554 1.1619 12 1 6.0513 1.6531 2.1704 13 6 6.1878 2.5254 0.2258 14 1 6.8746 2.2707 -0.5680 15 6 5.7684 3.8294 0.3825 16 7 4.9326 4.1397 1.3493 17 14 6.3875 5.1556 -0.7783 18 1 5.4710 5.2623 -1.9418 19 1 6.4341 6.4566 -0.0638 20 1 7.7498 4.8021 -1.2522 21 6 4.1741 1.4483 1.1571 22 8 3.5665 1.4438 2.2068 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8899 30 1 3.5522 1.6151 -2.0982 31 1 5.0007 2.2261 -1.2588 32 1 4.2738 -0.6942 -1.0174 33 1 5.0630 -0.1218 -2.5033 34 1 7.1166 -1.3054 -2.1777 35 1 7.9410 -1.2901 -0.6001 36 1 6.3663 -2.1012 -0.7734 37 1 7.0534 -0.0850 1.1448 38 1 4.6373 5.0571 1.4593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220407269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = -53.329445 kcal Electronic energy + Delta-G solvation = -19030.291227 eV Core-core repulsion = 16292.757431 eV Total energy + Delta-G solvation = -2737.533796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09087 -38.12367 -36.68653 -34.87284 -33.91543 -32.46906 -30.03994 -27.93851 -26.99995 -25.07963 -24.28550 -22.41884 -21.15264 -19.81001 -18.75306 -17.45395 -17.08781 -16.79823 -16.07365 -15.71305 -15.48264 -15.18620 -14.47245 -14.31069 -14.02622 -13.88385 -13.75657 -13.11976 -13.00909 -12.93150 -12.81431 -12.62122 -12.50683 -12.18462 -12.11862 -12.01845 -11.68727 -11.58405 -11.39825 -11.24540 -10.73272 -10.28657 -9.17215 -8.96448 -8.14156 -6.31039 1.39569 1.42483 1.51724 2.32813 2.41444 2.62261 3.09385 3.66601 4.00254 4.11620 4.21711 4.28034 4.43373 4.49422 4.60323 4.66385 4.78934 4.83775 4.90544 4.95839 5.02598 5.04859 5.12668 5.14620 5.18383 5.30413 5.33404 5.41683 5.44299 5.68533 5.70562 5.90319 6.17212 6.27028 6.77120 6.83167 7.03547 7.31042 7.93394 8.84349 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.011848 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.769283 B = 2362.740942 C = 3053.691819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.115 3.885 4 N -0.598 5.598 5 C 0.085 3.915 6 C -0.112 4.112 7 C 0.079 3.921 8 H 0.046 0.954 9 C -0.138 4.138 10 N -0.688 5.688 11 C 0.201 3.799 12 H 0.014 0.986 13 C -0.548 4.548 14 H 0.093 0.907 15 C 0.021 3.979 16 N -0.906 5.906 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.257 1.257 21 C 0.566 3.434 22 O -0.633 6.633 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.342 0.658 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -7.260 -10.909 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.008 4.008 4 N -0.328 5.328 5 C -0.037 4.037 6 C -0.151 4.151 7 C -0.031 4.031 8 H 0.064 0.936 9 C -0.196 4.196 10 N -0.321 5.321 11 C 0.089 3.911 12 H 0.032 0.968 13 C -0.586 4.586 14 H 0.111 0.889 15 C -0.181 4.181 16 N -0.543 5.543 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.221 1.221 20 H -0.181 1.181 21 C 0.356 3.644 22 O -0.517 6.517 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.187 -7.394 -10.298 12.865 hybrid contribution 0.890 1.696 0.212 1.927 sum -1.297 -5.698 -10.087 11.657 Atomic orbital electron populations 1.21653 0.93460 1.02551 1.02076 1.21762 0.97291 0.96014 1.01162 1.21438 0.80797 0.97409 1.01196 1.47559 1.05446 1.72844 1.06937 1.22524 0.97288 1.00263 0.83584 1.21714 0.96044 0.96505 1.00831 1.21082 0.96886 0.97851 0.87246 0.93590 1.21873 0.99589 0.96133 1.01970 1.59676 1.34215 1.29170 1.09046 1.19156 0.88462 0.87719 0.95762 0.96812 1.21694 1.28621 0.92350 1.15965 0.88941 1.25862 0.94658 1.00946 0.96655 1.70163 1.32506 1.19595 1.31990 0.85608 0.79597 0.78028 0.78915 1.19086 1.22119 1.18131 1.20956 0.91255 0.70273 0.81896 1.90417 1.72030 1.54853 1.34382 0.91180 0.93720 0.91003 0.90755 0.95088 0.94390 0.89648 0.90159 0.87982 0.92964 0.88203 0.90419 0.92693 0.92830 0.83977 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -4.05 6.26 30.59 0.19 -3.86 16 3 C 0.11 4.51 5.41 86.38 0.47 4.98 16 4 N -0.60 -26.79 2.47 -820.46 -2.03 -28.82 16 5 C 0.08 3.17 5.88 86.28 0.51 3.67 16 6 C -0.11 -3.55 5.10 30.20 0.15 -3.39 16 7 C 0.08 2.64 2.48 44.70 0.11 2.75 16 8 H 0.05 1.66 5.19 -2.39 -0.01 1.65 16 9 C -0.14 -3.48 9.21 71.98 0.66 -2.82 16 10 N -0.69 -28.39 6.19 -480.80 -2.98 -31.36 16 11 C 0.20 10.35 3.11 43.65 0.14 10.48 16 12 H 0.01 0.83 8.14 -2.38 -0.02 0.81 16 13 C -0.55 -27.13 4.92 25.60 0.13 -27.00 16 14 H 0.09 4.24 5.16 -2.91 -0.02 4.22 16 15 C 0.02 1.10 4.84 84.65 0.41 1.50 16 16 N -0.91 -52.99 12.11 21.45 0.26 -52.73 16 17 Si 0.95 40.31 29.52 68.60 2.03 42.34 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 21 C 0.57 30.64 5.18 88.06 0.46 31.10 16 22 O -0.63 -39.78 16.63 -3.04 -0.05 -39.83 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 27 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.04 1.75 7.40 -2.39 -0.02 1.73 16 29 H 0.09 2.82 7.88 -2.39 -0.02 2.80 16 30 H 0.08 2.47 7.79 -2.39 -0.02 2.45 16 31 H 0.10 4.33 4.16 -2.39 -0.01 4.32 16 32 H 0.05 1.76 8.02 -2.39 -0.02 1.74 16 33 H 0.10 2.38 8.10 -2.39 -0.02 2.36 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.31 8.04 -2.39 -0.02 1.29 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.34 12.90 8.55 -89.69 -0.77 12.13 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -68.98 294.27 1.44 -67.53 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.28 Total: 28.27 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 3.94 Total: 14.60 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.75 Total: -112.91 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.05 Total: -39.83 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -68.98 1.44 -67.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220407269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.205 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds