Wall clock time and date at job start Mon Mar 30 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.05816 * 2 1 4 4 C 1.53876 * 110.02928 * 121.41777 * 2 1 3 5 5 C 1.54270 * 106.59910 * 119.28174 * 4 2 1 6 6 C 1.55032 * 104.27724 * 23.51701 * 5 4 2 7 7 C 1.54266 * 110.03168 * 238.58248 * 2 1 3 8 8 H 1.09012 * 110.48289 * 335.91629 * 7 2 1 9 9 C 1.52993 * 110.48637 * 98.42744 * 7 2 1 10 10 N 1.46901 * 109.46980 * 183.16198 * 9 7 2 11 11 C 1.46902 * 110.99844 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47027 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00499 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99671 * 179.72159 * 15 14 12 18 18 N 1.31414 * 120.00152 * 0.27554 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 180.27723 * 17 15 14 20 20 H 1.48504 * 109.47034 * 59.99919 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99991 * 19 17 15 23 23 H 1.08994 * 109.47179 * 181.41788 * 1 2 3 24 24 H 1.09005 * 109.46455 * 301.41702 * 1 2 3 25 25 H 1.08996 * 109.46754 * 61.40975 * 1 2 3 26 26 H 1.09004 * 110.02995 * 238.56432 * 4 2 1 27 27 H 1.08997 * 110.03563 * 359.94697 * 4 2 1 28 28 H 1.09004 * 110.48610 * 142.28596 * 5 4 2 29 29 H 1.08996 * 110.48899 * 264.79790 * 5 4 2 30 30 H 1.09001 * 110.87365 * 203.89952 * 6 5 4 31 31 H 1.09000 * 110.69856 * 80.48683 * 6 5 4 32 32 H 1.08997 * 109.47529 * 63.16285 * 9 7 2 33 33 H 1.08999 * 109.47191 * 303.15815 * 9 7 2 34 34 H 1.00895 * 111.00207 * 303.95322 * 10 9 7 35 35 H 1.09004 * 109.47131 * 60.00016 * 11 10 9 36 36 H 1.08994 * 109.47471 * 299.99766 * 11 10 9 37 37 H 0.97000 * 119.99715 * 359.97438 * 14 12 11 38 38 H 0.96991 * 119.99827 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0571 -0.7536 1.2337 5 6 2.8874 -1.9408 0.7035 6 6 3.3131 -1.5034 -0.7216 7 6 2.0585 -0.7555 -1.2369 8 1 1.3132 -1.4644 -1.5980 9 6 2.4392 0.2296 -2.3438 10 7 2.8672 -0.5147 -3.5357 11 6 3.2407 0.4009 -4.6221 12 6 3.6737 -0.3971 -5.8250 13 8 3.6710 -1.6092 -5.7817 14 7 4.0641 0.2362 -6.9489 15 6 4.4575 -0.4897 -8.0433 16 1 4.4542 -1.5690 -8.0051 17 6 4.8544 0.1632 -9.2039 18 7 4.8579 1.4765 -9.2507 19 14 5.3831 -0.8260 -10.6978 20 1 4.2614 -1.6931 -11.1396 21 1 5.7568 0.0995 -11.7973 22 1 6.5520 -1.6708 -10.3437 23 1 -0.3633 -1.0273 0.0254 24 1 -0.3632 0.5357 0.8771 25 1 -0.3633 0.4918 -0.9023 26 1 2.6867 -0.0954 1.8325 27 1 1.2229 -1.1185 1.8329 28 1 3.7637 -2.1039 1.3310 29 1 2.2777 -2.8432 0.6593 30 1 3.5293 -2.3706 -1.3456 31 1 4.1717 -0.8334 -0.6785 32 1 3.2553 0.8650 -1.9998 33 1 1.5768 0.8483 -2.5920 34 1 3.6246 -1.1441 -3.3164 35 1 4.0622 1.0378 -4.2942 36 1 2.3837 1.0204 -4.8860 37 1 4.0659 1.2056 -6.9836 38 1 5.1353 1.9321 -10.0607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230671630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:38 Heat of formation + Delta-G solvation = -64.926729 kcal Electronic energy + Delta-G solvation = -16972.194331 eV Core-core repulsion = 14234.157638 eV Total energy + Delta-G solvation = -2738.036692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04384 -38.09055 -35.05019 -33.77418 -31.30013 -31.20882 -29.95987 -26.60189 -25.41688 -24.06809 -22.59325 -20.33265 -19.69053 -19.06846 -17.84607 -16.37215 -15.48857 -15.25872 -15.16836 -14.43593 -14.16685 -13.86874 -13.69877 -13.43957 -12.92256 -12.86495 -12.72860 -12.16057 -11.90355 -11.51620 -11.42938 -11.14355 -10.99505 -10.79813 -10.68960 -10.60682 -10.46424 -10.44158 -10.41820 -10.18264 -9.47140 -8.40852 -7.98478 -7.91833 -6.38851 -3.79613 3.22265 3.27488 3.32183 3.94893 4.12758 4.33181 4.50138 4.59501 4.74079 5.14963 5.21859 5.25063 5.27942 5.31824 5.41962 5.48479 5.53744 5.55862 5.68805 5.78559 5.79844 5.85992 5.93961 6.01721 6.03405 6.07502 6.11008 6.22011 6.28581 6.31608 6.48998 7.31964 7.57691 7.76326 8.09469 8.64854 9.20796 9.57749 10.09620 10.78970 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058198 B = 0.003790 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.002437 B = 7386.450032 C = 7618.930319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.085 4.085 8 H 0.085 0.915 9 C 0.067 3.933 10 N -0.669 5.669 11 C 0.050 3.950 12 C 0.441 3.559 13 O -0.583 6.583 14 N -0.564 5.564 15 C -0.300 4.300 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.348 0.652 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.392 0.608 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 0.458 17.803 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.162 4.162 7 C -0.104 4.104 8 H 0.104 0.896 9 C -0.063 4.063 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.227 3.773 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.168 0.832 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.427 -0.316 17.427 18.255 hybrid contribution 1.122 0.650 -0.531 1.401 sum -4.305 0.334 16.897 17.440 Atomic orbital electron populations 1.21876 0.95045 1.01739 1.01436 1.21762 0.95661 0.99368 0.94354 0.91183 1.22215 0.99267 0.97082 0.97192 1.22350 0.99298 0.97980 0.96486 1.22615 0.97452 1.00276 0.95876 1.22087 0.97691 0.97151 0.93477 0.89638 1.22010 0.99291 0.95087 0.89879 1.60074 1.44400 1.19394 1.06306 1.21670 0.99747 0.94647 0.92186 1.19848 0.84193 0.88603 0.84695 1.90516 1.58766 1.13941 1.83519 1.41860 1.57813 1.09296 1.11156 1.19665 1.40442 0.93048 0.89772 0.87985 1.25260 0.97636 0.95795 0.99256 1.69606 1.48224 1.07075 1.29537 0.85918 0.79204 0.78929 0.80159 1.19880 1.20995 1.19926 0.92629 0.93084 0.92527 0.92203 0.91930 0.92042 0.91733 0.90986 0.91817 0.95717 0.91303 0.83218 0.94044 0.89689 0.77465 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.84 37.16 0.33 -0.95 16 2 C -0.09 -0.88 3.07 -89.50 -0.28 -1.16 16 3 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 4 C -0.12 -1.05 6.46 -25.61 -0.17 -1.21 16 5 C -0.12 -1.15 6.83 -24.99 -0.17 -1.32 16 6 C -0.12 -1.37 5.63 -24.66 -0.14 -1.51 16 7 C -0.09 -0.98 2.63 -88.97 -0.23 -1.21 16 8 H 0.09 1.09 7.85 -51.92 -0.41 0.68 16 9 C 0.07 0.88 5.03 -3.83 -0.02 0.86 16 10 N -0.67 -11.39 6.13 -115.06 -0.70 -12.09 16 11 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 12 C 0.44 10.75 7.82 -10.98 -0.09 10.66 16 13 O -0.58 -16.27 15.78 5.55 0.09 -16.19 16 14 N -0.56 -14.65 5.29 -10.96 -0.06 -14.71 16 15 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 18 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 19 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.50 7.67 -51.93 -0.40 0.11 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 32 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.35 6.11 7.62 -39.29 -0.30 5.81 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.63 310.47 -7.73 -38.36 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.40 Total: 10.94 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.03 Total: -3.11 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.04 Total: -50.98 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.63 -7.73 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230671630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.564 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds