Wall clock time and date at job start Mon Mar 30 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.05816 * 2 1 4 4 C 1.53876 * 110.02928 * 121.41777 * 2 1 3 5 5 C 1.54270 * 106.59910 * 119.28174 * 4 2 1 6 6 C 1.55032 * 104.27724 * 23.51701 * 5 4 2 7 7 C 1.54266 * 110.03168 * 238.58248 * 2 1 3 8 8 H 1.09012 * 110.48289 * 335.91629 * 7 2 1 9 9 C 1.52993 * 110.48637 * 98.42744 * 7 2 1 10 10 N 1.46901 * 109.46980 * 183.16198 * 9 7 2 11 11 C 1.46902 * 110.99844 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47027 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99804 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00499 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99671 * 179.72159 * 15 14 12 18 18 N 1.31414 * 120.00152 * 0.27554 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 180.27723 * 17 15 14 20 20 H 1.48504 * 109.47034 * 59.99919 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99991 * 19 17 15 23 23 H 1.08994 * 109.47179 * 181.41788 * 1 2 3 24 24 H 1.09005 * 109.46455 * 301.41702 * 1 2 3 25 25 H 1.08996 * 109.46754 * 61.40975 * 1 2 3 26 26 H 1.09004 * 110.02995 * 238.56432 * 4 2 1 27 27 H 1.08997 * 110.03563 * 359.94697 * 4 2 1 28 28 H 1.09004 * 110.48610 * 142.28596 * 5 4 2 29 29 H 1.08996 * 110.48899 * 264.79790 * 5 4 2 30 30 H 1.09001 * 110.87365 * 203.89952 * 6 5 4 31 31 H 1.09000 * 110.69856 * 80.48683 * 6 5 4 32 32 H 1.08997 * 109.47529 * 63.16285 * 9 7 2 33 33 H 1.08999 * 109.47191 * 303.15815 * 9 7 2 34 34 H 1.00895 * 111.00207 * 303.95322 * 10 9 7 35 35 H 1.09004 * 109.47131 * 60.00016 * 11 10 9 36 36 H 1.08994 * 109.47471 * 299.99766 * 11 10 9 37 37 H 0.97000 * 119.99715 * 359.97438 * 14 12 11 38 38 H 0.96991 * 119.99827 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0571 -0.7536 1.2337 5 6 2.8874 -1.9408 0.7035 6 6 3.3131 -1.5034 -0.7216 7 6 2.0585 -0.7555 -1.2369 8 1 1.3132 -1.4644 -1.5980 9 6 2.4392 0.2296 -2.3438 10 7 2.8672 -0.5147 -3.5357 11 6 3.2407 0.4009 -4.6221 12 6 3.6737 -0.3971 -5.8250 13 8 3.6710 -1.6092 -5.7817 14 7 4.0641 0.2362 -6.9489 15 6 4.4575 -0.4897 -8.0433 16 1 4.4542 -1.5690 -8.0051 17 6 4.8544 0.1632 -9.2039 18 7 4.8579 1.4765 -9.2507 19 14 5.3831 -0.8260 -10.6978 20 1 4.2614 -1.6931 -11.1396 21 1 5.7568 0.0995 -11.7973 22 1 6.5520 -1.6708 -10.3437 23 1 -0.3633 -1.0273 0.0254 24 1 -0.3632 0.5357 0.8771 25 1 -0.3633 0.4918 -0.9023 26 1 2.6867 -0.0954 1.8325 27 1 1.2229 -1.1185 1.8329 28 1 3.7637 -2.1039 1.3310 29 1 2.2777 -2.8432 0.6593 30 1 3.5293 -2.3706 -1.3456 31 1 4.1717 -0.8334 -0.6785 32 1 3.2553 0.8650 -1.9998 33 1 1.5768 0.8483 -2.5920 34 1 3.6246 -1.1441 -3.3164 35 1 4.0622 1.0378 -4.2942 36 1 2.3837 1.0204 -4.8860 37 1 4.0659 1.2056 -6.9836 38 1 5.1353 1.9321 -10.0607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230671630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:37 Heat of formation + Delta-G solvation = -85.599891 kcal Electronic energy + Delta-G solvation = -16973.090786 eV Core-core repulsion = 14234.157638 eV Total energy + Delta-G solvation = -2738.933148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28239 -39.65137 -36.47503 -35.73181 -33.28335 -32.05326 -31.09949 -28.09257 -26.53221 -25.61125 -23.68485 -21.20372 -21.18839 -20.30998 -19.86961 -17.94423 -17.08984 -16.49011 -16.24041 -16.09497 -15.73326 -15.31482 -14.95136 -14.53539 -14.34172 -13.96276 -13.66175 -13.50541 -13.29201 -13.13479 -12.90441 -12.64717 -12.44340 -12.12724 -11.91664 -11.61034 -11.53992 -11.51158 -11.44805 -11.34339 -11.19216 -10.35831 -10.02951 -9.32020 -8.47331 -5.96515 1.39715 1.41448 1.52745 2.03678 2.28973 2.92667 3.19657 3.51233 3.70102 3.77072 3.88174 4.30243 4.37103 4.40901 4.45616 4.50298 4.57555 4.62204 4.62519 4.72917 4.76371 4.85765 4.99387 5.04465 5.13356 5.21173 5.28388 5.35638 5.39604 5.40326 5.52631 5.63576 5.89841 6.11978 6.41663 6.59207 7.11272 7.54636 8.10070 8.69945 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058198 B = 0.003790 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.002437 B = 7386.450032 C = 7618.930319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.083 4.083 8 H 0.069 0.931 9 C 0.069 3.931 10 N -0.684 5.684 11 C 0.064 3.936 12 C 0.436 3.564 13 O -0.624 6.624 14 N -0.572 5.572 15 C -0.337 4.337 16 H 0.079 0.921 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.271 1.271 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.343 0.657 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.397 0.603 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 1.272 18.640 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.102 4.102 8 H 0.087 0.913 9 C -0.059 4.059 10 N -0.317 5.317 11 C -0.068 4.068 12 C 0.224 3.776 13 O -0.511 6.511 14 N -0.209 5.209 15 C -0.467 4.467 16 H 0.097 0.903 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.196 1.196 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.231 0.769 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.544 0.531 18.283 19.113 hybrid contribution 1.139 0.398 -0.756 1.424 sum -4.405 0.929 17.527 18.096 Atomic orbital electron populations 1.21867 0.94527 1.01756 1.01833 1.21741 0.96077 0.99378 0.93564 0.90666 1.22209 0.99591 0.96749 0.96879 1.22345 0.99822 0.98295 0.95439 1.22605 0.97336 0.99670 0.96802 1.22046 0.97546 0.96783 0.93841 0.91256 1.22093 0.99697 0.95337 0.88792 1.60093 1.44192 1.19848 1.07552 1.21541 1.01080 0.94115 0.90087 1.20894 0.82498 0.88592 0.85638 1.90483 1.60079 1.16075 1.84417 1.41926 1.58265 1.09390 1.11349 1.19656 1.42928 0.92461 0.91626 0.90327 1.26063 0.96843 0.96898 1.01407 1.69666 1.47887 1.08045 1.30517 0.84976 0.78715 0.77749 0.76814 1.19717 1.19369 1.19615 0.92890 0.91673 0.93097 0.91245 0.90999 0.91090 0.91843 0.92620 0.91704 0.94498 0.90740 0.83859 0.91736 0.87902 0.76948 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.84 71.98 0.64 -1.63 16 2 C -0.09 -1.52 3.07 -10.07 -0.03 -1.55 16 3 H 0.07 1.23 7.84 -2.39 -0.02 1.21 16 4 C -0.12 -1.76 6.46 31.32 0.20 -1.56 16 5 C -0.12 -2.08 6.83 31.72 0.22 -1.86 16 6 C -0.13 -2.69 5.63 31.93 0.18 -2.51 16 7 C -0.08 -1.83 2.63 -9.72 -0.03 -1.85 16 8 H 0.07 1.75 7.85 -2.38 -0.02 1.73 16 9 C 0.07 1.72 5.03 86.30 0.43 2.15 16 10 N -0.68 -22.90 6.13 -517.94 -3.17 -26.07 16 11 C 0.06 2.31 6.17 85.56 0.53 2.84 16 12 C 0.44 21.49 7.82 87.66 0.69 22.18 16 13 O -0.62 -35.72 15.78 -3.07 -0.05 -35.77 16 14 N -0.57 -30.10 5.29 -306.97 -1.62 -31.73 16 15 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 16 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.92 -50.22 13.05 21.67 0.28 -49.93 16 19 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.35 8.02 -2.39 -0.02 1.33 16 31 H 0.06 1.35 8.00 -2.39 -0.02 1.33 16 32 H 0.04 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.34 12.08 7.62 -89.70 -0.68 11.39 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.40 19.75 7.90 -92.71 -0.73 19.01 16 38 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -65.59 310.47 1.20 -64.39 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.37 Total: 36.44 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.11 Total: -2.72 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.51 Total: -107.73 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.05 Total: -35.77 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.59 1.20 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230671630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.209 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds