Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46690 * 54.99908 * 3 2 1 5 5 C 1.50696 * 109.47091 * 175.00188 * 3 2 1 6 6 H 1.07995 * 120.00297 * 120.00126 * 5 3 2 7 7 C 1.37877 * 119.99928 * 299.99943 * 5 3 2 8 8 N 1.31522 * 120.00005 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47307 * 90.00259 * 9 7 5 11 11 H 1.48509 * 109.47127 * 209.99703 * 9 7 5 12 12 H 1.48491 * 109.47254 * 329.99765 * 9 7 5 13 13 N 1.46498 * 109.46935 * 294.99988 * 3 2 1 14 14 C 1.34775 * 120.00219 * 85.00193 * 13 3 2 15 15 O 1.21287 * 119.99654 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00171 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.36724 * 57.82046 * 16 14 13 18 18 C 1.54377 * 110.32452 * 295.63716 * 16 14 13 19 19 N 1.48562 * 104.59407 * 217.25286 * 18 16 14 20 20 C 1.48562 * 104.22433 * 39.48055 * 19 18 16 21 21 C 1.54266 * 110.32266 * 179.97438 * 16 14 13 22 22 H 1.08997 * 110.32179 * 359.97438 * 21 16 14 23 23 C 1.53002 * 110.32101 * 237.89540 * 21 16 14 24 24 H 1.09006 * 109.47228 * 59.99814 * 1 2 3 25 25 H 1.08993 * 109.47480 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47141 * 300.00550 * 1 2 3 27 27 H 1.09001 * 109.47366 * 239.99943 * 2 1 3 28 28 H 1.08998 * 109.47062 * 119.99594 * 2 1 3 29 29 H 0.97002 * 119.99632 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00284 * 264.99739 * 13 3 2 31 31 H 1.09000 * 110.40820 * 336.02907 * 18 16 14 32 32 H 1.08989 * 110.41015 * 98.47129 * 18 16 14 33 33 H 1.00897 * 110.99939 * 159.04236 * 19 18 16 34 34 H 1.08998 * 110.41528 * 201.73764 * 20 19 18 35 35 H 1.08999 * 110.41058 * 79.29526 * 20 19 18 36 36 H 1.08992 * 109.47637 * 60.00213 * 23 21 16 37 37 H 1.09002 * 109.46662 * 179.97438 * 23 21 16 38 38 H 1.08996 * 109.47002 * 299.99785 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0849 11 1 6.4395 -0.3099 2.1549 12 1 6.6135 0.8415 0.0278 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3670 15 8 -0.3395 2.6320 -0.4344 16 6 0.0368 3.3387 -2.6545 17 1 0.1002 2.6365 -3.4859 18 6 0.9366 4.5650 -2.9184 19 7 0.0262 5.5757 -3.5156 20 6 -1.2364 5.4295 -2.7465 21 6 -1.3930 3.9068 -2.5416 22 1 -1.8067 3.6976 -1.5551 23 6 -2.2890 3.3110 -3.6293 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0612 2.9498 30 1 2.2719 2.1232 -1.9978 31 1 1.3564 4.9366 -1.9837 32 1 1.7320 4.3092 -3.6182 33 1 0.4042 6.5060 -3.4168 34 1 -2.0770 5.8245 -3.3170 35 1 -1.1566 5.9364 -1.7849 36 1 -2.3269 2.2276 -3.5158 37 1 -3.2947 3.7210 -3.5365 38 1 -1.8839 3.5596 -4.6102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233867877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -51.725411 kcal Electronic energy + Delta-G solvation = -18087.730624 eV Core-core repulsion = 15350.266384 eV Total energy + Delta-G solvation = -2737.464240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81648 -37.57110 -34.99347 -32.43941 -31.86489 -31.13480 -29.30971 -26.83426 -25.70268 -23.18805 -22.11727 -20.71959 -19.48801 -19.09248 -17.57235 -16.23173 -15.72926 -15.29001 -14.71405 -14.41778 -14.10565 -13.60212 -13.43375 -13.09683 -12.70286 -12.40582 -12.15156 -11.88619 -11.72441 -11.39155 -11.24853 -11.00089 -10.86955 -10.75367 -10.69789 -10.50391 -10.32050 -10.14359 -9.62478 -9.06528 -8.98363 -8.58953 -8.49770 -7.81440 -6.13297 -4.22773 3.23231 3.30151 3.31771 3.39613 4.01910 4.31519 4.47235 4.71896 4.77805 5.12559 5.18088 5.31973 5.44861 5.63211 5.68583 5.70345 5.87466 5.90599 6.04335 6.14848 6.25187 6.37198 6.39444 6.45944 6.66458 6.75806 7.04233 7.19607 7.23505 7.37185 7.46935 7.61668 7.73534 7.89902 8.17982 8.68329 8.77456 9.15074 9.44979 10.91997 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.006397 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.073271 B = 4375.815031 C = 4950.308048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.113 4.113 17 H 0.098 0.902 18 C 0.046 3.954 19 N -0.665 5.665 20 C 0.039 3.961 21 C -0.090 4.090 22 H 0.101 0.899 23 C -0.137 4.137 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.335 0.665 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 6.327 -10.143 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.427 6.427 16 C -0.135 4.135 17 H 0.116 0.884 18 C -0.083 4.083 19 N -0.293 5.293 20 C -0.091 4.091 21 C -0.109 4.109 22 H 0.119 0.881 23 C -0.194 4.194 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.509 5.808 -9.881 13.181 hybrid contribution 1.623 0.328 0.657 1.782 sum -4.885 6.136 -9.224 12.108 Atomic orbital electron populations 1.21835 0.98365 0.98001 1.01209 1.21931 0.92605 0.99856 1.02246 1.18775 0.94149 0.89188 0.81095 0.93438 1.21236 0.90765 1.38970 1.06254 0.92126 1.24891 0.98581 0.94802 0.95418 1.69901 1.35120 1.37633 1.09335 0.86465 0.84899 0.77641 0.78195 1.20601 1.21061 1.19844 1.46488 1.14602 1.55796 1.18465 1.20214 0.82723 0.79152 0.88896 1.90632 1.51390 1.60163 1.40489 1.22159 0.96303 0.97671 0.97372 0.88382 1.22841 0.95285 0.91730 0.98468 1.63736 1.04242 1.08141 1.53188 1.23018 0.93418 0.96507 0.96133 1.21899 0.94034 0.93423 1.01515 0.88119 1.21779 0.98695 1.00511 0.98412 0.94278 0.95888 0.93203 0.95059 0.88332 0.92574 0.78008 0.93369 0.89613 0.85049 0.90203 0.94083 0.92741 0.92852 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -14.39 5.00 -54.93 -0.27 -14.66 16 14 C 0.51 9.80 5.57 -10.99 -0.06 9.74 16 15 O -0.55 -12.49 12.39 5.55 0.07 -12.42 16 16 C -0.11 -1.68 3.10 -90.39 -0.28 -1.96 16 17 H 0.10 1.35 7.71 -51.93 -0.40 0.95 16 18 C 0.05 0.61 6.98 -2.18 -0.02 0.60 16 19 N -0.66 -7.88 7.62 -109.63 -0.84 -8.71 16 20 C 0.04 0.47 7.02 -2.15 -0.02 0.45 16 21 C -0.09 -1.25 3.24 -89.21 -0.29 -1.54 16 22 H 0.10 1.66 6.46 -51.93 -0.34 1.32 16 23 C -0.14 -1.62 8.91 37.16 0.33 -1.29 16 24 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 31 H 0.05 0.70 7.85 -51.93 -0.41 0.29 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.33 3.36 8.92 -39.29 -0.35 3.01 16 34 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -29.11 299.61 -7.78 -36.89 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.15 Total: 8.97 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.71 Total: -6.02 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.48 Total: -47.42 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.11 -7.78 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233867877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.830 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds