Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46690 * 54.99908 * 3 2 1 5 5 C 1.50696 * 109.47091 * 175.00188 * 3 2 1 6 6 H 1.07995 * 120.00297 * 120.00126 * 5 3 2 7 7 C 1.37877 * 119.99928 * 299.99943 * 5 3 2 8 8 N 1.31522 * 120.00005 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47307 * 90.00259 * 9 7 5 11 11 H 1.48509 * 109.47127 * 209.99703 * 9 7 5 12 12 H 1.48491 * 109.47254 * 329.99765 * 9 7 5 13 13 N 1.46498 * 109.46935 * 294.99988 * 3 2 1 14 14 C 1.34775 * 120.00219 * 85.00193 * 13 3 2 15 15 O 1.21287 * 119.99654 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00171 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.36724 * 57.82046 * 16 14 13 18 18 C 1.54377 * 110.32452 * 295.63716 * 16 14 13 19 19 N 1.48562 * 104.59407 * 217.25286 * 18 16 14 20 20 C 1.48562 * 104.22433 * 39.48055 * 19 18 16 21 21 C 1.54266 * 110.32266 * 179.97438 * 16 14 13 22 22 H 1.08997 * 110.32179 * 359.97438 * 21 16 14 23 23 C 1.53002 * 110.32101 * 237.89540 * 21 16 14 24 24 H 1.09006 * 109.47228 * 59.99814 * 1 2 3 25 25 H 1.08993 * 109.47480 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47141 * 300.00550 * 1 2 3 27 27 H 1.09001 * 109.47366 * 239.99943 * 2 1 3 28 28 H 1.08998 * 109.47062 * 119.99594 * 2 1 3 29 29 H 0.97002 * 119.99632 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00284 * 264.99739 * 13 3 2 31 31 H 1.09000 * 110.40820 * 336.02907 * 18 16 14 32 32 H 1.08989 * 110.41015 * 98.47129 * 18 16 14 33 33 H 1.00897 * 110.99939 * 159.04236 * 19 18 16 34 34 H 1.08998 * 110.41528 * 201.73764 * 20 19 18 35 35 H 1.08999 * 110.41058 * 79.29526 * 20 19 18 36 36 H 1.08992 * 109.47637 * 60.00213 * 23 21 16 37 37 H 1.09002 * 109.46662 * 179.97438 * 23 21 16 38 38 H 1.08996 * 109.47002 * 299.99785 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0849 11 1 6.4395 -0.3099 2.1549 12 1 6.6135 0.8415 0.0278 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3670 15 8 -0.3395 2.6320 -0.4344 16 6 0.0368 3.3387 -2.6545 17 1 0.1002 2.6365 -3.4859 18 6 0.9366 4.5650 -2.9184 19 7 0.0262 5.5757 -3.5156 20 6 -1.2364 5.4295 -2.7465 21 6 -1.3930 3.9068 -2.5416 22 1 -1.8067 3.6976 -1.5551 23 6 -2.2890 3.3110 -3.6293 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0612 2.9498 30 1 2.2719 2.1232 -1.9978 31 1 1.3564 4.9366 -1.9837 32 1 1.7320 4.3092 -3.6182 33 1 0.4042 6.5060 -3.4168 34 1 -2.0770 5.8245 -3.3170 35 1 -1.1566 5.9364 -1.7849 36 1 -2.3269 2.2276 -3.5158 37 1 -3.2947 3.7210 -3.5365 38 1 -1.8839 3.5596 -4.6102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233867877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -72.930400 kcal Electronic energy + Delta-G solvation = -18088.650142 eV Core-core repulsion = 15350.266384 eV Total energy + Delta-G solvation = -2738.383758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24900 -38.92105 -36.83880 -34.32886 -32.96656 -32.88137 -30.64782 -28.72481 -26.71293 -25.08852 -23.45356 -22.14415 -21.21060 -20.47891 -19.10980 -17.85523 -17.23263 -16.95814 -16.37045 -15.75052 -15.70889 -14.95887 -14.70352 -14.59906 -14.08382 -13.80408 -13.70827 -13.37573 -13.19162 -13.02410 -12.86302 -12.70861 -12.61541 -12.16705 -12.09787 -11.82932 -11.74689 -11.62045 -11.56128 -11.06068 -10.64364 -10.49134 -9.65939 -9.57251 -8.16774 -6.34180 1.44208 1.44452 1.55189 1.84547 2.35240 2.62832 3.12676 3.35513 3.61344 3.69841 3.99088 4.21622 4.32589 4.41679 4.47853 4.56240 4.66462 4.72897 4.75804 4.84010 4.92489 4.97069 5.04980 5.14310 5.24760 5.25898 5.37879 5.43185 5.55740 5.63254 5.70653 5.79404 5.93127 6.16785 6.35848 6.74474 7.00615 7.33330 7.59864 8.88587 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.006397 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.073271 B = 4375.815031 C = 4950.308048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.586 6.586 16 C -0.105 4.105 17 H 0.118 0.882 18 C 0.051 3.949 19 N -0.656 5.656 20 C 0.042 3.958 21 C -0.094 4.094 22 H 0.070 0.930 23 C -0.130 4.130 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.029 0.971 32 H 0.106 0.894 33 H 0.348 0.652 34 H 0.101 0.899 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 6.926 -12.513 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.351 5.351 14 C 0.290 3.710 15 O -0.468 6.468 16 C -0.127 4.127 17 H 0.136 0.864 18 C -0.079 4.079 19 N -0.285 5.285 20 C -0.088 4.088 21 C -0.113 4.113 22 H 0.088 0.912 23 C -0.187 4.187 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.914 6.431 -12.295 15.083 hybrid contribution 1.380 0.174 1.422 1.990 sum -4.533 6.605 -10.873 13.505 Atomic orbital electron populations 1.21670 0.97004 0.99107 1.00206 1.21786 0.93731 0.99254 1.01266 1.18350 0.93608 0.89135 0.81468 0.98658 1.21586 0.91459 1.38821 1.06663 0.91016 1.25776 1.03295 0.94381 0.95061 1.70056 1.37078 1.38431 1.09882 0.85383 0.79161 0.77390 0.78635 1.20479 1.21013 1.18367 1.46260 1.15552 1.55850 1.17454 1.21020 0.81648 0.78248 0.90093 1.90624 1.52384 1.61322 1.42422 1.22165 0.97308 0.98386 0.94824 0.86413 1.22820 0.95594 0.91221 0.98295 1.63754 1.03708 1.08703 1.52378 1.23017 0.94405 0.95097 0.96246 1.21909 0.93657 0.94928 1.00799 0.91202 1.21726 0.99043 1.00004 0.97914 0.93716 0.93600 0.95699 0.94024 0.91096 0.92634 0.76276 0.95244 0.87546 0.83585 0.88045 0.94998 0.93374 0.91423 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.95 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 3 C 0.28 14.22 2.24 44.25 0.10 14.32 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -28.78 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -28.62 5.00 -446.09 -2.23 -30.85 16 14 C 0.50 19.56 5.57 87.66 0.49 20.05 16 15 O -0.59 -27.66 12.39 -3.05 -0.04 -27.70 16 16 C -0.11 -2.96 3.10 -10.64 -0.03 -2.99 16 17 H 0.12 2.90 7.71 -2.39 -0.02 2.88 16 18 C 0.05 1.23 6.98 86.45 0.60 1.83 16 19 N -0.66 -13.71 7.62 -500.77 -3.82 -17.53 16 20 C 0.04 0.93 7.02 86.47 0.61 1.54 16 21 C -0.09 -2.49 3.24 -9.88 -0.03 -2.52 16 22 H 0.07 2.33 6.46 -2.39 -0.02 2.31 16 23 C -0.13 -2.76 8.91 71.98 0.64 -2.12 16 24 H 0.04 1.95 5.65 -2.38 -0.01 1.93 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 3.94 5.95 -2.39 -0.01 3.92 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.40 13.92 8.54 -92.71 -0.79 13.13 16 31 H 0.03 0.83 7.85 -2.39 -0.02 0.81 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.35 6.01 8.92 -89.70 -0.80 5.21 16 34 H 0.10 1.85 7.86 -2.39 -0.02 1.84 16 35 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.19 299.61 -0.53 -64.72 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.54 Total: 27.72 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.83 Total: -8.00 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -5.80 Total: -100.65 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -64.19 -0.53 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233867877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.213 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds