Wall clock time and date at job start Mon Mar 30 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 N 1.46902 * 109.47498 * 180.41836 * 3 2 1 5 5 C 1.46900 * 110.99902 * 294.92051 * 4 3 2 6 6 H 1.09004 * 109.38739 * 53.50827 * 5 4 3 7 7 C 1.50694 * 109.38937 * 293.71515 * 5 4 3 8 8 H 1.08001 * 119.99664 * 354.19583 * 7 5 4 9 9 C 1.37874 * 120.00600 * 174.19606 * 7 5 4 10 10 N 1.31519 * 119.99679 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 120.00411 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46934 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47314 * 120.00375 * 11 9 7 14 14 H 1.48506 * 109.47144 * 240.00232 * 11 9 7 15 15 C 1.50259 * 109.98049 * 173.66121 * 5 4 3 16 16 O 1.21273 * 118.62956 * 162.79722 * 15 5 4 17 17 N 1.33723 * 122.74752 * 342.82416 * 15 5 4 18 18 C 1.46498 * 118.53368 * 181.68686 * 17 15 5 19 19 C 1.46006 * 122.92765 * 1.66051 * 17 15 5 20 20 C 1.47188 * 110.99646 * 57.80928 * 4 3 2 21 21 H 1.09004 * 109.59779 * 287.40899 * 20 4 3 22 22 C 1.53004 * 109.59440 * 47.86237 * 20 4 3 23 23 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46819 * 59.99772 * 1 2 3 25 25 H 1.08997 * 109.46940 * 299.99225 * 1 2 3 26 26 H 1.08999 * 109.47680 * 120.00526 * 2 1 3 27 27 H 1.09007 * 109.47341 * 240.00353 * 2 1 3 28 28 H 1.09000 * 109.47198 * 300.42518 * 3 2 1 29 29 H 1.08999 * 109.46952 * 60.42451 * 3 2 1 30 30 H 0.97000 * 120.00317 * 179.97438 * 10 9 7 31 31 H 1.08998 * 109.47497 * 359.97438 * 18 17 15 32 32 H 1.09002 * 109.47187 * 120.00027 * 18 17 15 33 33 H 1.09006 * 109.46868 * 239.99972 * 18 17 15 34 34 H 1.08995 * 109.37941 * 102.01528 * 19 17 15 35 35 H 1.09007 * 109.37506 * 221.78349 * 19 17 15 36 36 H 1.08999 * 109.46650 * 53.67480 * 22 20 4 37 37 H 1.09000 * 109.46796 * 173.67038 * 22 20 4 38 38 H 1.08999 * 109.47265 * 293.67182 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0101 5 6 4.0440 0.8617 1.2286 6 1 3.6039 -0.1231 1.3860 7 6 3.6975 1.7560 2.3909 8 1 3.2195 2.7085 2.2156 9 6 3.9906 1.3584 3.6781 10 7 4.5731 0.1987 3.8915 11 14 3.5617 2.4673 5.1188 12 1 2.9193 3.7076 4.6146 13 1 2.6253 1.7583 6.0276 14 1 4.8002 2.8178 5.8595 15 6 5.5377 0.7305 1.1309 16 8 6.1751 0.5730 2.1505 17 7 6.1936 0.7808 -0.0334 18 6 7.6480 0.6049 -0.0253 19 6 5.5248 1.0026 -1.3122 20 6 4.0284 0.7133 -1.1784 21 1 3.8736 -0.3567 -1.0400 22 6 3.3007 1.1812 -2.4404 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 1.6705 1.9585 -0.8861 29 1 1.6829 1.9541 0.8938 30 1 4.7797 -0.0810 4.7971 31 1 7.9897 0.4507 0.9981 32 1 7.9125 -0.2615 -0.6315 33 1 8.1238 1.4952 -0.4366 34 1 5.6667 2.0386 -1.6196 35 1 5.9537 0.3402 -2.0642 36 1 3.3692 2.2662 -2.5181 37 1 3.7617 0.7243 -3.3161 38 1 2.2528 0.8862 -2.3860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250044382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:31 Heat of formation + Delta-G solvation = -36.350474 kcal Electronic energy + Delta-G solvation = -18873.640627 eV Core-core repulsion = 16136.843094 eV Total energy + Delta-G solvation = -2736.797533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25770 -38.72444 -36.51338 -34.63764 -33.65135 -32.32699 -29.50077 -27.91904 -26.70386 -26.17054 -24.04313 -22.98979 -21.20274 -19.14783 -18.63248 -17.78330 -17.22824 -16.55245 -16.10461 -15.75043 -15.61861 -15.35158 -14.89632 -14.17063 -13.92326 -13.75519 -13.43185 -13.29167 -13.07027 -12.97388 -12.90585 -12.71736 -12.51384 -12.31561 -12.21949 -12.04846 -11.98073 -11.63193 -11.31557 -11.17789 -10.54173 -10.07437 -9.34391 -8.95217 -8.05268 -6.16929 1.36834 1.40269 1.51312 2.21834 2.45034 2.48483 3.23974 3.29979 3.91916 4.08141 4.15651 4.24266 4.35901 4.42561 4.51869 4.55796 4.63625 4.72235 4.82000 4.87485 4.92984 4.99926 5.03343 5.09998 5.16184 5.21259 5.25788 5.38145 5.44027 5.59229 5.69282 5.81601 5.99643 6.29811 6.61497 6.74087 7.00201 7.48999 7.88006 8.99903 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.012348 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.798314 B = 2266.953688 C = 3454.720221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.065 3.935 4 N -0.530 5.530 5 C 0.218 3.782 6 H 0.003 0.997 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.023 3.977 10 N -0.872 5.872 11 Si 0.955 3.045 12 H -0.260 1.260 13 H -0.275 1.275 14 H -0.291 1.291 15 C 0.499 3.501 16 O -0.549 6.549 17 N -0.637 5.637 18 C 0.078 3.922 19 C 0.128 3.872 20 C 0.053 3.947 21 H 0.028 0.972 22 C -0.132 4.132 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.252 0.748 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 0.614 -14.606 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C -0.062 4.062 4 N -0.255 5.255 5 C 0.108 3.892 6 H 0.020 0.980 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.181 4.181 10 N -0.507 5.507 11 Si 0.781 3.219 12 H -0.184 1.184 13 H -0.201 1.201 14 H -0.218 1.218 15 C 0.287 3.713 16 O -0.424 6.424 17 N -0.374 5.374 18 C -0.064 4.064 19 C 0.006 3.994 20 C -0.056 4.056 21 H 0.046 0.954 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.927 0.899 -13.938 14.271 hybrid contribution -0.010 -0.635 1.489 1.619 sum -2.937 0.264 -12.449 12.794 Atomic orbital electron populations 1.21610 0.93781 1.01813 1.02255 1.22097 0.97964 0.98901 1.00496 1.22166 0.86318 0.95433 1.02316 1.62753 1.08555 1.52801 1.01405 1.19026 0.86646 0.94349 0.89185 0.98020 1.20890 1.41775 1.04573 0.89887 0.92033 1.25761 0.94320 0.96382 1.01655 1.70273 1.38604 1.21360 1.20440 0.85559 0.77434 0.79538 0.79371 1.18435 1.20058 1.21789 1.21846 0.92409 0.74540 0.82477 1.90623 1.67815 1.48615 1.35330 1.47910 1.08160 1.73698 1.07597 1.21594 0.80766 1.01712 1.02378 1.21618 0.91556 1.01976 0.84253 1.22106 0.94632 0.95644 0.93172 0.95356 1.21806 1.00346 1.02470 0.94309 0.92533 0.90644 0.93515 0.95543 0.91354 0.88584 0.92476 0.93861 0.93110 0.90699 0.91175 0.91149 0.88380 0.91273 0.89627 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.16 -5.13 4.98 30.59 0.15 -4.97 16 3 C 0.07 2.31 4.64 86.30 0.40 2.71 16 4 N -0.53 -21.56 4.56 -854.75 -3.90 -25.46 16 5 C 0.22 11.48 1.68 43.28 0.07 11.55 16 6 H 0.00 0.16 6.16 -2.38 -0.01 0.14 16 7 C -0.53 -30.92 7.63 25.60 0.20 -30.73 16 8 H 0.06 3.53 7.37 -2.91 -0.02 3.51 16 9 C 0.02 1.38 4.94 84.65 0.42 1.80 16 10 N -0.87 -55.59 10.87 21.45 0.23 -55.36 16 11 Si 0.96 46.96 29.54 68.60 2.03 48.99 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 15 C 0.50 26.79 7.11 87.68 0.62 27.41 16 16 O -0.55 -34.50 12.62 -3.01 -0.04 -34.54 16 17 N -0.64 -26.32 3.23 -850.18 -2.74 -29.06 16 18 C 0.08 2.72 10.55 127.77 1.35 4.07 16 19 C 0.13 3.93 5.95 86.47 0.51 4.44 16 20 C 0.05 1.69 1.88 44.86 0.08 1.77 16 21 H 0.03 0.98 6.96 -2.39 -0.02 0.96 16 22 C -0.13 -2.80 8.15 71.98 0.59 -2.22 16 23 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 1.10 6.41 -2.39 -0.02 1.08 16 27 H 0.07 2.02 5.81 -2.38 -0.01 2.00 16 28 H 0.10 2.70 6.50 -2.39 -0.02 2.68 16 29 H 0.06 2.33 6.86 -2.39 -0.02 2.31 16 30 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.05 2.12 6.67 -2.39 -0.02 2.10 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 35 H 0.10 2.25 8.13 -2.38 -0.02 2.23 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.37 5.85 -2.39 -0.01 1.36 16 Total: -1.00 -75.56 289.70 1.72 -73.84 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.03 Total: 8.57 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.11 Total: 13.02 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -6.41 Total: -109.88 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.04 Total: -34.54 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -75.56 1.72 -73.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250044382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.487 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds