Wall clock time and date at job start Mon Mar 30 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.33716 * 118.53868 * 89.99646 * 4 3 2 6 6 O 1.21273 * 118.62480 * 358.31687 * 5 4 3 7 7 C 1.50256 * 122.75175 * 178.28897 * 5 4 3 8 8 H 1.09005 * 109.38771 * 257.07257 * 7 5 4 9 9 C 1.50700 * 109.38660 * 137.38113 * 7 5 4 10 10 H 1.08003 * 120.00078 * 240.00012 * 9 7 5 11 11 C 1.37881 * 119.99966 * 60.00125 * 9 7 5 12 12 N 1.31511 * 119.99825 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00008 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46974 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47043 * 119.99746 * 13 11 9 16 16 H 1.48503 * 109.47293 * 239.99963 * 13 11 9 17 17 N 1.46899 * 109.97977 * 17.22507 * 7 5 4 18 18 C 1.46896 * 111.00141 * 186.33463 * 17 7 5 19 19 C 1.47192 * 110.17505 * 309.70232 * 17 7 5 20 20 C 1.46008 * 118.53459 * 269.73161 * 4 3 2 21 21 H 1.08999 * 109.37760 * 77.98597 * 20 4 3 22 22 C 1.53002 * 109.37879 * 318.33770 * 20 4 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 30 30 H 0.97006 * 119.99957 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.47554 * 60.00200 * 18 17 7 32 32 H 1.09005 * 109.47294 * 180.02562 * 18 17 7 33 33 H 1.08996 * 109.47529 * 300.00091 * 18 17 7 34 34 H 1.08998 * 109.59295 * 188.77170 * 19 17 7 35 35 H 1.09001 * 109.59290 * 309.07256 * 19 17 7 36 36 H 1.08994 * 109.46763 * 59.99653 * 22 20 4 37 37 H 1.08995 * 109.47594 * 180.02562 * 22 20 4 38 38 H 1.09003 * 109.46631 * 300.00066 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1433 1.4425 -1.1756 6 8 3.4857 1.4114 -2.1940 7 6 5.6412 1.4802 -1.2869 8 1 5.9588 2.4873 -1.5572 9 6 6.0881 0.5138 -2.3534 10 1 6.7497 -0.3015 -2.1005 11 6 5.6523 0.6705 -3.6521 12 7 4.8471 1.6637 -3.9601 13 14 6.2056 -0.5277 -4.9739 14 1 7.1031 -1.5472 -4.3736 15 1 5.0184 -1.1979 -5.5628 16 1 6.9356 0.2096 -6.0364 17 7 6.2495 1.1053 -0.0033 18 6 7.7077 1.2790 -0.0411 19 6 5.6529 1.8903 1.0896 20 6 4.2030 1.4482 1.2818 21 1 4.1878 0.4444 1.7063 22 6 3.4986 2.4121 2.2388 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 4.5402 1.7737 -4.8738 31 1 7.9441 2.3227 -0.2482 32 1 8.1326 0.9940 0.9214 33 1 8.1285 0.6488 -0.8245 34 1 6.2130 1.7208 2.0092 35 1 5.6796 2.9499 0.8354 36 1 2.4681 2.0891 2.3865 37 1 4.0187 2.4180 3.1967 38 1 3.5074 3.4162 1.8148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250052294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:23 Heat of formation + Delta-G solvation = -31.917731 kcal Electronic energy + Delta-G solvation = -18748.341344 eV Core-core repulsion = 16011.736029 eV Total energy + Delta-G solvation = -2736.605315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22064 -37.86472 -37.25395 -34.62703 -34.05007 -31.76999 -29.71550 -28.62371 -26.46018 -25.75559 -23.21903 -23.06130 -22.10168 -19.24632 -18.79494 -17.72812 -17.17298 -16.42178 -16.05481 -15.63044 -15.55988 -15.14363 -15.00584 -14.20974 -14.15164 -13.82028 -13.52662 -13.28669 -13.13537 -12.93764 -12.79935 -12.67983 -12.61432 -12.36939 -12.20204 -12.04272 -11.97031 -11.72632 -11.50846 -11.20702 -10.54315 -9.93305 -9.28745 -9.10880 -8.00807 -6.15140 1.36848 1.39920 1.51302 2.26693 2.42948 2.50742 3.21762 3.30310 3.87698 4.01187 4.15930 4.23954 4.28897 4.40879 4.46670 4.57225 4.61501 4.70654 4.75972 4.78383 4.86242 4.96683 5.02042 5.04160 5.15352 5.17323 5.23451 5.31021 5.36258 5.45160 5.65005 5.87301 6.02361 6.21893 6.55115 6.74148 7.04872 7.47805 7.98562 8.99192 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.010545 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.055732 B = 2654.698218 C = 3647.474958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.109 3.891 4 N -0.623 5.623 5 C 0.499 3.501 6 O -0.532 6.532 7 C 0.217 3.783 8 H -0.015 1.015 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.019 3.981 12 N -0.856 5.856 13 Si 0.958 3.042 14 H -0.261 1.261 15 H -0.291 1.291 16 H -0.275 1.275 17 N -0.544 5.544 18 C 0.040 3.960 19 C 0.039 3.961 20 C 0.143 3.857 21 H 0.074 0.926 22 C -0.152 4.152 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.108 0.892 30 H 0.250 0.750 31 H 0.012 0.988 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 0.311 14.616 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C -0.013 4.013 4 N -0.360 5.360 5 C 0.287 3.713 6 O -0.405 6.405 7 C 0.107 3.893 8 H 0.002 0.998 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.186 4.186 12 N -0.490 5.490 13 Si 0.783 3.217 14 H -0.185 1.185 15 H -0.217 1.217 16 H -0.200 1.200 17 N -0.270 5.270 18 C -0.107 4.107 19 C -0.090 4.090 20 C 0.039 3.961 21 H 0.092 0.908 22 C -0.210 4.210 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.344 -0.091 13.975 14.370 hybrid contribution 0.399 0.403 -1.540 1.641 sum -2.944 0.311 12.435 12.783 Atomic orbital electron populations 1.21636 0.93352 1.02332 1.02273 1.21752 0.97431 0.97007 1.00639 1.21511 0.80503 0.97072 1.02238 1.48104 1.06519 1.75186 1.06144 1.21643 0.91831 0.75150 0.82678 1.90689 1.66760 1.47889 1.35189 1.19071 0.87422 0.94578 0.88249 0.99774 1.20903 1.31544 1.13881 0.91925 0.91873 1.25810 0.94482 0.97315 1.00989 1.70429 1.30025 1.30669 1.17892 0.85520 0.77737 0.79300 0.79096 1.18489 1.21725 1.20026 1.62460 1.05684 1.55188 1.03648 1.22239 0.87059 0.98794 1.02654 1.22607 0.95204 0.94764 0.96382 1.21100 0.91167 1.00325 0.83471 0.90846 1.22133 1.01629 0.98058 0.99197 0.90235 0.93824 0.91863 0.96203 0.91028 0.93959 0.87435 0.94042 0.96905 0.89039 0.92463 0.86263 0.95857 0.90478 0.88387 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.13 -4.26 6.25 30.59 0.19 -4.07 16 3 C 0.11 3.85 5.02 86.38 0.43 4.29 16 4 N -0.62 -25.55 2.71 -801.53 -2.18 -27.72 16 5 C 0.50 26.89 7.11 87.68 0.62 27.52 16 6 O -0.53 -33.39 12.30 -3.01 -0.04 -33.43 16 7 C 0.22 11.71 1.93 43.28 0.08 11.79 16 8 H -0.01 -0.89 8.12 -2.38 -0.02 -0.91 16 9 C -0.54 -32.05 7.92 25.60 0.20 -31.85 16 10 H 0.06 3.66 7.13 -2.91 -0.02 3.64 16 11 C 0.02 1.17 4.97 84.66 0.42 1.59 16 12 N -0.86 -54.90 10.29 21.45 0.22 -54.68 16 13 Si 0.96 47.23 29.54 68.60 2.03 49.26 16 14 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 16 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 17 N -0.54 -22.96 4.72 -906.38 -4.28 -27.24 16 18 C 0.04 1.47 9.34 127.69 1.19 2.66 16 19 C 0.04 1.25 4.88 86.18 0.42 1.67 16 20 C 0.14 4.39 3.54 45.02 0.16 4.55 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 C -0.15 -3.18 8.60 71.98 0.62 -2.56 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.77 7.26 -2.39 -0.02 1.75 16 29 H 0.11 2.83 5.51 -2.39 -0.01 2.81 16 30 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 2.52 8.06 -2.38 -0.02 2.50 16 33 H 0.06 2.29 6.87 -2.39 -0.02 2.28 16 34 H 0.12 2.83 8.00 -2.39 -0.02 2.81 16 35 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 36 H 0.08 1.40 6.30 -2.39 -0.02 1.38 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.52 297.24 1.83 -74.70 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.02 Total: 6.26 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.06 Total: 12.85 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -6.24 Total: -109.64 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.04 Total: -33.43 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.52 1.83 -74.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250052294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.779 kcal (2) G-P(sol) polarization free energy of solvation -76.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds