Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47504 * 2 1 4 4 H 1.08994 * 109.47149 * 175.22715 * 3 2 1 5 5 C 1.50698 * 109.46590 * 55.22743 * 3 2 1 6 6 H 1.08003 * 120.00105 * 239.99595 * 5 3 2 7 7 C 1.37880 * 120.00382 * 60.00455 * 5 3 2 8 8 N 1.31511 * 119.99418 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00121 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46915 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47009 * 299.99444 * 9 7 5 12 12 H 1.48496 * 109.46867 * 59.99754 * 9 7 5 13 13 C 1.53000 * 109.47106 * 295.23044 * 3 2 1 14 14 N 1.46506 * 109.46968 * 294.70997 * 13 3 2 15 15 C 1.34770 * 119.99900 * 174.78905 * 14 13 3 16 16 O 1.21288 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99912 * 179.97438 * 15 14 13 18 18 H 1.09000 * 110.29046 * 59.29778 * 17 15 14 19 19 C 1.54263 * 110.32524 * 181.42329 * 17 15 14 20 20 C 1.54377 * 105.06029 * 118.89462 * 19 17 15 21 21 N 1.48554 * 104.59462 * 23.85647 * 20 19 17 22 22 C 1.48717 * 104.28826 * 320.56990 * 21 20 19 23 23 H 1.09001 * 109.46437 * 305.38608 * 1 2 3 24 24 H 1.08993 * 109.47510 * 65.38170 * 1 2 3 25 25 H 1.08998 * 109.47439 * 185.38983 * 1 2 3 26 26 H 1.09006 * 109.47089 * 240.00674 * 2 1 3 27 27 H 1.08999 * 109.47444 * 120.00508 * 2 1 3 28 28 H 0.97005 * 119.99591 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47440 * 54.70861 * 13 3 2 30 30 H 1.09001 * 109.46887 * 174.70984 * 13 3 2 31 31 H 0.96999 * 119.99761 * 354.77898 * 14 13 3 32 32 H 1.09005 * 110.32290 * 237.79395 * 19 17 15 33 33 H 1.09005 * 110.32063 * 359.97438 * 19 17 15 34 34 H 1.09001 * 110.40730 * 142.63039 * 20 19 17 35 35 H 1.09003 * 110.41288 * 264.95527 * 20 19 17 36 36 H 1.00906 * 110.99651 * 200.95977 * 21 20 19 37 37 H 1.09002 * 110.39248 * 280.64297 * 22 21 20 38 38 H 1.09004 * 110.51167 * 158.15105 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4436 0.0855 5 6 1.4435 2.1861 1.1671 6 1 0.8333 3.0606 0.9954 7 6 1.6769 1.7504 2.4543 8 7 2.4196 0.6854 2.6633 9 14 0.9380 2.6726 3.9010 10 1 1.3350 2.0066 5.1675 11 1 1.4336 4.0724 3.9009 12 1 -0.5424 2.6716 3.7846 13 6 1.6304 2.1283 -1.3049 14 7 2.3110 1.4829 -2.4303 15 6 2.0221 1.8520 -3.6939 16 8 1.1983 2.7182 -3.8994 17 6 2.7225 1.1885 -4.8515 18 1 2.5349 0.1148 -4.8417 19 6 2.2514 1.8024 -6.1860 20 6 3.5230 2.4038 -6.8220 21 7 4.6428 1.6408 -6.2131 22 6 4.2396 1.4683 -4.7921 23 1 -0.3632 0.5951 0.8379 24 1 -0.3634 0.4281 -0.9342 25 1 -0.3634 -1.0231 0.0965 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5835 0.3786 3.5689 29 1 0.5516 2.0446 -1.4363 30 1 1.9111 3.1809 -1.2658 31 1 2.9696 0.7900 -2.2660 32 1 1.8341 1.0297 -6.8318 33 1 1.5131 2.5834 -6.0037 34 1 3.5105 2.2630 -7.9028 35 1 3.6055 3.4631 -6.5783 36 1 5.5096 2.1526 -6.2837 37 1 4.4360 2.3802 -4.2282 38 1 4.7647 0.6238 -4.3458 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = -54.076631 kcal Electronic energy + Delta-G solvation = -17640.922724 eV Core-core repulsion = 14903.356527 eV Total energy + Delta-G solvation = -2737.566197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89641 -37.53061 -35.98820 -33.34367 -31.34149 -30.54190 -29.14008 -27.75688 -24.89878 -23.17640 -22.21374 -21.43834 -19.46829 -19.01816 -17.44907 -16.47849 -15.96442 -15.15566 -14.98590 -14.77450 -14.39432 -13.92601 -13.41867 -13.23835 -13.03807 -12.38494 -12.23955 -12.06280 -11.60321 -11.45721 -11.39178 -11.24051 -10.93232 -10.77085 -10.71511 -10.51753 -9.95730 -9.67661 -9.50023 -9.20609 -8.90460 -8.78359 -8.48019 -8.31429 -6.06228 -4.11262 2.97842 3.29083 3.33799 3.36575 3.64816 4.19696 4.40421 4.55971 4.63429 4.98367 5.12785 5.25708 5.33047 5.47497 5.55447 5.74396 5.82787 5.98466 6.07175 6.18916 6.28110 6.42950 6.51086 6.54181 6.69256 6.76495 6.93861 7.00305 7.07729 7.38887 7.49631 7.66866 7.77291 8.00849 8.06862 8.32371 8.65263 8.90077 9.52516 11.00094 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.004936 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.526678 B = 5671.675300 C = 5694.941424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.038 3.962 4 H 0.030 0.970 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.122 3.878 14 N -0.716 5.716 15 C 0.510 3.490 16 O -0.551 6.551 17 C -0.116 4.116 18 H 0.103 0.897 19 C -0.117 4.117 20 C 0.035 3.965 21 N -0.666 5.666 22 C 0.045 3.955 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.013 0.987 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.397 0.603 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.337 0.663 37 H 0.047 0.953 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -0.724 -13.287 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.020 3.980 4 H 0.048 0.952 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.000 4.000 14 N -0.365 5.365 15 C 0.294 3.706 16 O -0.430 6.430 17 C -0.138 4.138 18 H 0.121 0.879 19 C -0.155 4.155 20 C -0.095 4.095 21 N -0.294 5.294 22 C -0.085 4.085 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.152 0.848 37 H 0.066 0.934 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.722 -0.892 -13.499 13.800 hybrid contribution 0.071 0.970 1.385 1.692 sum 2.793 0.078 -12.114 12.432 Atomic orbital electron populations 1.21651 0.97891 0.98545 1.00889 1.21493 0.94676 0.98980 0.99840 1.18951 0.96807 0.92486 0.89796 0.95202 1.20893 1.31649 1.11956 0.90269 0.92547 1.24887 0.95044 0.94966 0.98714 1.69865 1.38139 1.23504 1.21128 0.86670 0.79702 0.80018 0.81726 1.21314 1.20270 1.20212 1.21801 0.96551 0.96141 0.85491 1.46294 1.43274 1.40910 1.05999 1.20399 0.82763 0.83045 0.84358 1.90637 1.34843 1.32538 1.84940 1.22051 0.95328 1.01913 0.94486 0.87877 1.22321 0.97875 1.01386 0.93925 1.22942 0.91055 0.95745 0.99730 1.63761 1.04960 1.48547 1.12172 1.22898 0.93649 1.01506 0.90403 0.91510 0.95165 0.95928 0.96877 0.89319 0.92915 0.92013 0.93072 0.76872 0.90831 0.88770 0.90095 0.94001 0.84783 0.93414 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.33 37.16 0.35 -2.48 16 2 C -0.11 -2.48 5.35 -26.73 -0.14 -2.62 16 3 C 0.04 0.89 2.10 -91.77 -0.19 0.70 16 4 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.51 -13.22 6.98 -34.44 -0.24 -13.46 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.13 11.37 55.43 0.63 -23.50 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.12 2.55 4.87 -4.04 -0.02 2.53 16 14 N -0.72 -12.29 5.11 -60.29 -0.31 -12.60 16 15 C 0.51 8.57 7.02 -10.99 -0.08 8.50 16 16 O -0.55 -11.28 15.25 5.55 0.08 -11.19 16 17 C -0.12 -1.48 3.44 -90.39 -0.31 -1.79 16 18 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.12 -1.42 6.59 -25.35 -0.17 -1.59 16 20 C 0.03 0.36 7.47 -2.19 -0.02 0.35 16 21 N -0.67 -6.95 7.62 -109.54 -0.84 -7.79 16 22 C 0.05 0.51 6.98 -2.09 -0.01 0.50 16 23 H 0.07 1.56 6.87 -51.93 -0.36 1.20 16 24 H 0.03 0.61 6.71 -51.93 -0.35 0.26 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.25 7.21 -51.93 -0.37 -0.12 16 27 H 0.09 2.21 6.21 -51.93 -0.32 1.89 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 1.37 6.43 -51.93 -0.33 1.03 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.40 6.03 7.86 -40.82 -0.32 5.71 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.33 6.46 -51.93 -0.34 1.00 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.34 2.92 8.92 -39.29 -0.35 2.57 16 37 H 0.05 0.58 7.85 -51.93 -0.41 0.17 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -28.70 301.37 -7.91 -36.61 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.07 Total: 5.99 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.93 Total: -7.74 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.51 Total: -43.89 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.70 -7.91 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.465 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds