Wall clock time and date at job start Mon Mar 30 2020 03:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47504 * 2 1 4 4 H 1.08994 * 109.47149 * 175.22715 * 3 2 1 5 5 C 1.50698 * 109.46590 * 55.22743 * 3 2 1 6 6 H 1.08003 * 120.00105 * 239.99595 * 5 3 2 7 7 C 1.37880 * 120.00382 * 60.00455 * 5 3 2 8 8 N 1.31511 * 119.99418 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00121 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46915 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47009 * 299.99444 * 9 7 5 12 12 H 1.48496 * 109.46867 * 59.99754 * 9 7 5 13 13 C 1.53000 * 109.47106 * 295.23044 * 3 2 1 14 14 N 1.46506 * 109.46968 * 294.70997 * 13 3 2 15 15 C 1.34770 * 119.99900 * 174.78905 * 14 13 3 16 16 O 1.21288 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99912 * 179.97438 * 15 14 13 18 18 H 1.09000 * 110.29046 * 59.29778 * 17 15 14 19 19 C 1.54263 * 110.32524 * 181.42329 * 17 15 14 20 20 C 1.54377 * 105.06029 * 118.89462 * 19 17 15 21 21 N 1.48554 * 104.59462 * 23.85647 * 20 19 17 22 22 C 1.48717 * 104.28826 * 320.56990 * 21 20 19 23 23 H 1.09001 * 109.46437 * 305.38608 * 1 2 3 24 24 H 1.08993 * 109.47510 * 65.38170 * 1 2 3 25 25 H 1.08998 * 109.47439 * 185.38983 * 1 2 3 26 26 H 1.09006 * 109.47089 * 240.00674 * 2 1 3 27 27 H 1.08999 * 109.47444 * 120.00508 * 2 1 3 28 28 H 0.97005 * 119.99591 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47440 * 54.70861 * 13 3 2 30 30 H 1.09001 * 109.46887 * 174.70984 * 13 3 2 31 31 H 0.96999 * 119.99761 * 354.77898 * 14 13 3 32 32 H 1.09005 * 110.32290 * 237.79395 * 19 17 15 33 33 H 1.09005 * 110.32063 * 359.97438 * 19 17 15 34 34 H 1.09001 * 110.40730 * 142.63039 * 20 19 17 35 35 H 1.09003 * 110.41288 * 264.95527 * 20 19 17 36 36 H 1.00906 * 110.99651 * 200.95977 * 21 20 19 37 37 H 1.09002 * 110.39248 * 280.64297 * 22 21 20 38 38 H 1.09004 * 110.51167 * 158.15105 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4436 0.0855 5 6 1.4435 2.1861 1.1671 6 1 0.8333 3.0606 0.9954 7 6 1.6769 1.7504 2.4543 8 7 2.4196 0.6854 2.6633 9 14 0.9380 2.6726 3.9010 10 1 1.3350 2.0066 5.1675 11 1 1.4336 4.0724 3.9009 12 1 -0.5424 2.6716 3.7846 13 6 1.6304 2.1283 -1.3049 14 7 2.3110 1.4829 -2.4303 15 6 2.0221 1.8520 -3.6939 16 8 1.1983 2.7182 -3.8994 17 6 2.7225 1.1885 -4.8515 18 1 2.5349 0.1148 -4.8417 19 6 2.2514 1.8024 -6.1860 20 6 3.5230 2.4038 -6.8220 21 7 4.6428 1.6408 -6.2131 22 6 4.2396 1.4683 -4.7921 23 1 -0.3632 0.5951 0.8379 24 1 -0.3634 0.4281 -0.9342 25 1 -0.3634 -1.0231 0.0965 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5835 0.3786 3.5689 29 1 0.5516 2.0446 -1.4363 30 1 1.9111 3.1809 -1.2658 31 1 2.9696 0.7900 -2.2660 32 1 1.8341 1.0297 -6.8318 33 1 1.5131 2.5834 -6.0037 34 1 3.5105 2.2630 -7.9028 35 1 3.6055 3.4631 -6.5783 36 1 5.5096 2.1526 -6.2837 37 1 4.4360 2.3802 -4.2282 38 1 4.7647 0.6238 -4.3458 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:28 Heat of formation + Delta-G solvation = -74.376380 kcal Electronic energy + Delta-G solvation = -17641.802987 eV Core-core repulsion = 14903.356527 eV Total energy + Delta-G solvation = -2738.446460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18342 -38.69322 -37.66428 -35.02695 -33.18148 -31.61649 -30.21457 -29.36719 -26.72159 -24.93016 -23.38269 -22.43322 -20.88028 -20.65012 -18.69657 -17.93734 -17.41042 -16.70976 -16.52768 -16.26163 -15.83999 -15.21830 -14.94569 -14.63408 -14.47008 -13.98283 -13.44842 -13.35402 -13.17080 -12.96451 -12.80407 -12.60212 -12.44066 -12.35082 -12.23055 -11.79278 -11.73813 -11.47694 -11.16080 -10.90381 -10.74210 -10.41979 -9.95646 -9.62417 -8.08501 -6.18818 1.43269 1.44378 1.50996 1.63398 2.27404 2.48911 3.21152 3.30011 3.58298 3.72645 3.93571 4.22596 4.30972 4.42696 4.51183 4.52826 4.63244 4.71208 4.77304 4.86404 4.94103 4.97346 5.01185 5.07178 5.12476 5.20864 5.40698 5.57239 5.65193 5.66692 5.72508 5.88757 6.14458 6.33725 6.35889 6.64759 6.86977 7.28838 7.47407 8.96170 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.004936 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.526678 B = 5671.675300 C = 5694.941424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.042 3.958 4 H 0.012 0.988 5 C -0.524 4.524 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.274 1.274 13 C 0.140 3.860 14 N -0.709 5.709 15 C 0.510 3.490 16 O -0.590 6.590 17 C -0.109 4.109 18 H 0.124 0.876 19 C -0.119 4.119 20 C 0.037 3.963 21 N -0.663 5.663 22 C 0.048 3.952 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.410 0.590 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.036 0.964 36 H 0.349 0.651 37 H 0.035 0.965 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -1.504 -14.424 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.023 3.977 4 H 0.030 0.970 5 C -0.563 4.563 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.200 1.200 13 C 0.017 3.983 14 N -0.359 5.359 15 C 0.297 3.703 16 O -0.471 6.471 17 C -0.131 4.131 18 H 0.142 0.858 19 C -0.157 4.157 20 C -0.092 4.092 21 N -0.293 5.293 22 C -0.082 4.082 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.246 0.754 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.165 0.835 37 H 0.054 0.946 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.205 -1.682 -14.649 15.089 hybrid contribution -0.066 1.230 1.698 2.098 sum 3.139 -0.452 -12.951 13.333 Atomic orbital electron populations 1.21549 0.97179 0.99334 1.00182 1.21363 0.95225 0.97946 0.99815 1.18840 0.95434 0.93279 0.90136 0.97015 1.21167 1.31596 1.11953 0.91589 0.93486 1.25487 0.95454 0.95668 1.00775 1.69969 1.38955 1.24403 1.21446 0.85839 0.79018 0.78966 0.79209 1.20920 1.20077 1.19978 1.21324 0.95930 0.95259 0.85829 1.46122 1.43311 1.41061 1.05446 1.21116 0.82066 0.82315 0.84828 1.90626 1.36648 1.34328 1.85496 1.22087 0.95888 1.02511 0.92623 0.85820 1.22340 0.98195 1.01217 0.93987 1.22953 0.90254 0.95315 1.00717 1.63780 1.05443 1.48776 1.11280 1.22901 0.92550 1.01691 0.91056 0.94018 0.94376 0.93987 0.94134 0.91980 0.92994 0.93291 0.94733 0.75428 0.89186 0.91178 0.88212 0.94556 0.83470 0.94626 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.33 71.98 0.67 -4.56 16 2 C -0.11 -4.60 5.35 30.60 0.16 -4.44 16 3 C 0.04 1.95 2.10 -11.54 -0.02 1.93 16 4 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 5 C -0.52 -27.56 6.98 25.60 0.18 -27.38 16 6 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 7 C 0.03 1.37 5.29 84.66 0.45 1.81 16 8 N -0.91 -49.60 11.37 21.45 0.24 -49.36 16 9 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.14 5.87 4.87 86.38 0.42 6.29 16 14 N -0.71 -23.72 5.11 -463.05 -2.37 -26.09 16 15 C 0.51 16.69 7.02 87.66 0.62 17.30 16 16 O -0.59 -24.21 15.25 -3.05 -0.05 -24.26 16 17 C -0.11 -2.57 3.44 -10.64 -0.04 -2.60 16 18 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.12 -2.67 6.59 31.49 0.21 -2.47 16 20 C 0.04 0.69 7.47 86.45 0.65 1.34 16 21 N -0.66 -12.00 7.62 -500.48 -3.82 -15.81 16 22 C 0.05 0.97 6.98 86.42 0.60 1.57 16 23 H 0.04 1.93 6.87 -2.39 -0.02 1.91 16 24 H 0.04 1.50 6.71 -2.39 -0.02 1.48 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.52 7.21 -2.38 -0.02 1.50 16 27 H 0.06 3.08 6.21 -2.39 -0.01 3.07 16 28 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 29 H 0.05 2.18 6.43 -2.39 -0.02 2.16 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.41 11.73 7.86 -92.71 -0.73 11.00 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 1.95 6.46 -2.38 -0.02 1.93 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.35 5.11 8.92 -89.69 -0.80 4.31 16 37 H 0.04 0.81 7.85 -2.39 -0.02 0.79 16 38 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -61.20 301.37 -0.54 -61.74 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.47 Total: 20.44 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 3.89 Total: -11.21 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -5.94 Total: -91.26 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -61.20 -0.54 -61.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.639 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds