Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31511 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46865 * 89.99417 * 9 7 5 11 11 H 1.48498 * 109.47233 * 209.99802 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99943 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08994 * 109.47374 * 39.99639 * 16 14 13 18 18 N 1.46899 * 109.46954 * 159.99915 * 16 14 13 19 19 C 1.53003 * 109.47045 * 279.99176 * 16 14 13 20 20 C 1.53000 * 109.47286 * 174.99954 * 19 16 14 21 21 C 1.53000 * 117.50312 * 243.62861 * 20 19 16 22 22 C 1.52998 * 117.50115 * 175.00345 * 20 19 16 23 23 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 27 27 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 28 28 H 0.97000 * 120.00229 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 30 30 H 1.00903 * 111.00374 * 59.99775 * 18 16 14 31 31 H 1.00904 * 110.99967 * 183.94937 * 18 16 14 32 32 H 1.08994 * 109.47574 * 295.00663 * 19 16 14 33 33 H 1.09004 * 109.46944 * 55.00483 * 19 16 14 34 34 H 1.09001 * 115.54697 * 29.33781 * 20 19 16 35 35 H 1.09004 * 117.49320 * 359.97438 * 21 20 19 36 36 H 1.08995 * 117.50157 * 145.02300 * 21 20 19 37 37 H 1.08998 * 117.49988 * 214.98810 * 22 20 19 38 38 H 1.09002 * 117.49794 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.3982 2.7617 -3.4966 18 7 -1.4226 3.4595 -2.7147 19 6 0.6609 4.7463 -2.7010 20 6 0.3628 5.3878 -4.0576 21 6 1.5527 5.7071 -4.9649 22 6 0.7996 6.8395 -4.2639 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.8771 0.4817 2.1127 29 1 2.2719 2.1232 -1.9977 30 1 -1.7786 3.9996 -1.9403 31 1 -1.7170 3.8532 -3.5958 32 1 0.2365 5.3610 -1.9073 33 1 1.7397 4.6704 -2.5642 34 1 -0.5633 5.0682 -4.5354 35 1 2.5480 5.4605 -4.5950 36 1 1.4097 5.5974 -6.0399 37 1 0.1611 7.4748 -4.8777 38 1 1.2990 7.3378 -3.4330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308822774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -21.014974 kcal Electronic energy + Delta-G solvation = -17786.076807 eV Core-core repulsion = 15049.944271 eV Total energy + Delta-G solvation = -2736.132536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.53441 -37.78109 -35.49748 -34.18111 -32.34984 -31.43357 -28.65905 -27.48447 -24.50280 -22.56497 -22.49756 -20.72367 -20.25246 -19.48252 -17.51963 -16.28779 -16.06718 -15.80476 -14.80442 -14.62088 -14.41560 -14.07989 -13.79426 -13.24632 -12.93393 -12.81096 -12.25987 -11.92952 -11.77703 -11.68073 -11.56495 -11.44622 -11.02395 -10.84538 -10.59091 -10.49858 -10.08624 -9.89618 -9.51263 -9.20628 -9.11093 -8.73943 -8.55176 -8.00809 -6.20221 -4.22417 3.24174 3.26889 3.36603 3.42394 3.60918 3.89209 4.32983 4.51732 4.68596 4.76341 4.85751 5.02737 5.13800 5.25798 5.41704 5.44571 5.47507 5.72294 5.74945 5.92416 5.96300 6.03838 6.08778 6.14792 6.24876 6.71549 6.75245 6.89921 7.03352 7.11818 7.32203 7.34597 7.50085 7.55734 8.18798 8.56962 8.77574 9.01314 9.41368 10.91847 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.006426 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.520867 B = 4356.412073 C = 5031.963125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.542 6.542 16 C 0.078 3.922 17 H 0.098 0.902 18 N -0.826 5.826 19 C -0.120 4.120 20 C -0.154 4.154 21 C -0.178 4.178 22 C -0.181 4.181 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.393 0.607 30 H 0.350 0.650 31 H 0.339 0.661 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 7.341 -10.970 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.419 6.419 16 C -0.038 4.038 17 H 0.116 0.884 18 N -0.357 5.357 19 C -0.160 4.160 20 C -0.172 4.172 21 C -0.215 4.215 22 C -0.218 4.218 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.226 0.774 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.554 6.451 -10.089 15.319 hybrid contribution 0.185 0.536 0.234 0.613 sum -9.370 6.987 -9.855 15.288 Atomic orbital electron populations 1.21874 0.96784 0.98998 1.02468 1.22274 0.94486 0.99928 1.00961 1.19124 0.95484 0.88528 0.82916 0.93464 1.21060 0.88677 1.39709 1.07764 0.90266 1.24832 0.94851 0.95138 0.97691 1.69867 1.08693 1.44625 1.29828 0.86899 0.80956 0.80014 0.80835 1.20230 1.22230 1.18478 1.46146 1.14987 1.55890 1.17918 1.20214 0.82369 0.79167 0.88839 1.90647 1.51146 1.59830 1.40315 1.21353 0.89578 0.95301 0.97544 0.88421 1.58578 1.08020 1.61271 1.07875 1.21917 1.02529 0.96026 0.95485 1.22289 0.99129 0.98248 0.97561 1.23063 0.96827 1.03219 0.98379 1.22960 1.04146 0.91242 1.03476 0.95105 0.93033 0.92496 0.92361 0.92932 0.92318 0.77358 0.83579 0.84710 0.90981 0.90362 0.87922 0.88405 0.88905 0.88972 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.14 -3.12 5.11 -26.73 -0.14 -3.26 16 3 C 0.24 5.77 1.83 -69.08 -0.13 5.65 16 4 H 0.05 1.25 6.63 -51.93 -0.34 0.90 16 5 C -0.53 -14.39 9.31 -34.44 -0.32 -14.71 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.88 21.94 24.41 -169.99 -4.15 17.79 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.70 -13.70 5.02 -54.93 -0.28 -13.98 16 14 C 0.51 9.38 5.66 -10.99 -0.06 9.32 16 15 O -0.54 -11.79 13.40 5.55 0.07 -11.72 16 16 C 0.08 1.04 3.20 -68.86 -0.22 0.82 16 17 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 18 N -0.83 -10.35 8.95 -5.66 -0.05 -10.40 16 19 C -0.12 -1.41 5.12 -26.73 -0.14 -1.55 16 20 C -0.15 -1.45 5.59 -90.62 -0.51 -1.96 16 21 C -0.18 -1.60 10.18 -26.73 -0.27 -1.87 16 22 C -0.18 -1.60 10.25 -26.73 -0.27 -1.88 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 25 H 0.06 1.18 5.66 -51.93 -0.29 0.89 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.39 6.82 8.54 -40.82 -0.35 6.47 16 30 H 0.35 4.57 8.58 -39.29 -0.34 4.24 16 31 H 0.34 3.25 7.40 -39.29 -0.29 2.96 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 34 H 0.10 0.86 6.58 -51.93 -0.34 0.52 16 35 H 0.10 0.92 8.03 -51.93 -0.42 0.51 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -30.79 300.07 -6.86 -37.65 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.92 Total: 11.86 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.84 Total: -10.02 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.45 Total: -50.08 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.79 -6.86 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308822774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.635 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds