Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 N 1.46504 * 109.46759 * 120.00206 * 2 1 3 5 5 C 1.46761 * 124.34730 * 120.00248 * 4 2 1 6 6 C 1.54484 * 105.47191 * 197.01190 * 5 4 2 7 7 C 1.54628 * 101.76342 * 334.58153 * 6 5 4 8 8 H 1.09002 * 110.48709 * 265.98828 * 7 6 5 9 9 N 1.46896 * 110.48834 * 143.47531 * 7 6 5 10 10 C 1.46898 * 111.00468 * 154.99628 * 9 7 6 11 11 C 1.53002 * 109.47585 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.34420 * 124.35094 * 299.99041 * 4 2 1 21 21 O 1.21284 * 124.93942 * 359.62244 * 20 4 2 22 22 H 1.09005 * 109.46713 * 300.00398 * 1 2 3 23 23 H 1.08996 * 109.47004 * 59.99896 * 1 2 3 24 24 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47052 * 239.99882 * 2 1 3 26 26 H 1.08997 * 109.47030 * 60.00483 * 3 2 1 27 27 H 1.08999 * 109.46821 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47180 * 299.99996 * 3 2 1 29 29 H 1.09001 * 110.25378 * 78.01059 * 5 4 2 30 30 H 1.08997 * 110.32229 * 316.04314 * 5 4 2 31 31 H 1.08999 * 110.97094 * 216.46666 * 6 5 4 32 32 H 1.09000 * 110.99960 * 92.71433 * 6 5 4 33 33 H 1.00904 * 110.99891 * 31.04967 * 9 7 6 34 34 H 1.09005 * 109.46746 * 60.00263 * 10 9 7 35 35 H 1.09002 * 109.47495 * 300.00382 * 10 9 7 36 36 H 1.09005 * 109.46767 * 60.00394 * 11 10 9 37 37 H 1.09002 * 109.47113 * 300.00734 * 11 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 2.7608 -2.4954 2.5896 7 6 2.4038 -1.2534 3.4387 8 1 3.3051 -0.8060 3.8579 9 7 1.4651 -1.6149 4.5092 10 6 1.5649 -0.6775 5.6358 11 6 0.5740 -1.0853 6.7280 12 6 0.6761 -0.1232 7.8834 13 1 1.3772 0.6972 7.8427 14 6 -0.1257 -0.2905 8.9926 15 7 -0.0370 0.5494 10.0008 16 14 -1.3378 -1.7100 9.0633 17 1 -2.6399 -1.2779 8.4950 18 1 -0.8087 -2.8525 8.2758 19 1 -1.5284 -2.1282 10.4754 20 6 1.7480 -0.3083 2.4562 21 8 1.0758 0.6541 2.7610 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 3.8981 -1.6166 0.9544 30 1 2.4980 -2.5978 0.4309 31 1 3.7139 -2.9214 2.9030 32 1 1.9677 -3.2417 2.6374 33 1 1.6139 -2.5649 4.8150 34 1 1.3315 0.3301 5.2918 35 1 2.5780 -0.6987 6.0375 36 1 0.8071 -2.0930 7.0721 37 1 -0.4389 -1.0638 6.3260 38 1 -0.6013 0.4319 10.7809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308826388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -38.852168 kcal Electronic energy + Delta-G solvation = -17566.228992 eV Core-core repulsion = 14829.322977 eV Total energy + Delta-G solvation = -2736.906015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50922 -36.32861 -36.23307 -34.22656 -32.56112 -30.30662 -28.69428 -27.26268 -26.48918 -23.75119 -22.41487 -21.65582 -20.23653 -18.66969 -16.89059 -16.77046 -16.36723 -15.33585 -14.73320 -14.37375 -14.12325 -13.90085 -13.77723 -13.64009 -13.13726 -12.88029 -12.70328 -12.44238 -12.10270 -11.92928 -11.81961 -11.43881 -11.34480 -11.23173 -11.13854 -10.90162 -10.16561 -9.74407 -9.69755 -9.45715 -9.14703 -8.68534 -8.47261 -7.95099 -5.97952 -3.95677 2.79793 2.98914 3.37905 3.43967 3.48463 4.29335 4.40291 4.51963 4.54048 4.79197 4.88768 5.01671 5.07701 5.16008 5.29553 5.36615 5.41763 5.52775 5.57489 5.65829 5.69351 5.78924 5.84233 6.13508 6.21122 6.26315 6.33802 6.68379 6.87098 7.12396 7.20479 7.43547 7.59717 7.77374 7.92620 8.45225 8.60480 9.06789 9.64405 11.15583 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.005043 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.863593 B = 5551.384499 C = 5771.278785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.156 3.844 3 C -0.169 4.169 4 N -0.625 5.625 5 C 0.109 3.891 6 C -0.136 4.136 7 C 0.053 3.947 8 H 0.079 0.921 9 N -0.673 5.673 10 C 0.072 3.928 11 C -0.008 4.008 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.266 1.266 19 H -0.289 1.289 20 C 0.531 3.469 21 O -0.507 6.507 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.341 0.659 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.012 0.988 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 -6.924 -22.143 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 C -0.227 4.227 4 N -0.362 5.362 5 C -0.015 4.015 6 C -0.175 4.175 7 C -0.061 4.061 8 H 0.097 0.903 9 N -0.306 5.306 10 C -0.056 4.056 11 C -0.046 4.046 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.711 3.289 17 H -0.203 1.203 18 H -0.190 1.190 19 H -0.215 1.215 20 C 0.317 3.683 21 O -0.380 6.380 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.967 -5.982 -22.136 23.694 hybrid contribution 0.244 -1.000 0.502 1.145 sum 6.211 -6.982 -21.634 23.567 Atomic orbital electron populations 1.22183 0.94746 1.02374 1.03307 1.20864 0.94509 0.92973 0.86322 1.22192 1.01020 0.96063 1.03380 1.48412 1.52105 1.29603 1.06128 1.21970 0.94710 0.86781 0.98014 1.22845 1.03431 0.97434 0.93755 1.22182 0.95187 0.95468 0.93297 0.90347 1.60413 1.51792 1.06900 1.11516 1.22106 0.98214 0.96086 0.89158 1.19530 0.95077 0.96668 0.93330 1.21068 1.22379 1.12554 0.99674 0.91090 1.25003 0.96876 0.96126 0.95438 1.69923 1.40306 1.37131 1.07054 0.86726 0.81950 0.83420 0.76846 1.20252 1.19036 1.21548 1.20777 0.79574 0.84909 0.83029 1.90687 1.37857 1.28346 1.81061 0.90670 0.91792 0.92565 0.89929 0.90757 0.92706 0.91684 0.91448 0.90644 0.89339 0.89086 0.83987 0.90626 0.95932 0.96950 0.96064 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.20 37.16 0.34 -1.54 16 2 C 0.16 1.61 3.47 -67.93 -0.24 1.38 16 3 C -0.17 -1.78 9.20 37.16 0.34 -1.44 16 4 N -0.63 -7.46 2.83 -164.84 -0.47 -7.93 16 5 C 0.11 0.90 7.30 -3.12 -0.02 0.88 16 6 C -0.14 -1.26 6.60 -25.10 -0.17 -1.43 16 7 C 0.05 0.75 3.26 -67.73 -0.22 0.53 16 8 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 9 N -0.67 -11.76 6.32 -106.74 -0.67 -12.43 16 10 C 0.07 1.56 5.44 -3.82 -0.02 1.54 16 11 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 12 C -0.52 -15.46 9.66 -34.44 -0.33 -15.80 16 13 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -28.78 13.96 55.43 0.77 -28.01 16 16 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 C 0.53 8.55 7.04 -10.86 -0.08 8.47 16 21 O -0.51 -10.36 14.43 5.55 0.08 -10.28 16 22 H 0.07 1.11 6.80 -51.93 -0.35 0.75 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.34 5.22 8.37 -39.29 -0.33 4.89 16 34 H 0.08 1.82 7.49 -51.93 -0.39 1.43 16 35 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 38 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -34.81 306.20 -7.35 -42.16 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.40 Total: -0.19 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.61 Total: -5.83 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.37 Total: -48.37 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.81 -7.35 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308826388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.310 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds