Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 N 1.46504 * 109.46759 * 120.00206 * 2 1 3 5 5 C 1.46761 * 124.34730 * 120.00248 * 4 2 1 6 6 C 1.54484 * 105.47191 * 197.01190 * 5 4 2 7 7 C 1.54628 * 101.76342 * 334.58153 * 6 5 4 8 8 H 1.09002 * 110.48709 * 265.98828 * 7 6 5 9 9 N 1.46896 * 110.48834 * 143.47531 * 7 6 5 10 10 C 1.46898 * 111.00468 * 154.99628 * 9 7 6 11 11 C 1.53002 * 109.47585 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46997 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.34420 * 124.35094 * 299.99041 * 4 2 1 21 21 O 1.21284 * 124.93942 * 359.62244 * 20 4 2 22 22 H 1.09005 * 109.46713 * 300.00398 * 1 2 3 23 23 H 1.08996 * 109.47004 * 59.99896 * 1 2 3 24 24 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47052 * 239.99882 * 2 1 3 26 26 H 1.08997 * 109.47030 * 60.00483 * 3 2 1 27 27 H 1.08999 * 109.46821 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47180 * 299.99996 * 3 2 1 29 29 H 1.09001 * 110.25378 * 78.01059 * 5 4 2 30 30 H 1.08997 * 110.32229 * 316.04314 * 5 4 2 31 31 H 1.08999 * 110.97094 * 216.46666 * 6 5 4 32 32 H 1.09000 * 110.99960 * 92.71433 * 6 5 4 33 33 H 1.00904 * 110.99891 * 31.04967 * 9 7 6 34 34 H 1.09005 * 109.46746 * 60.00263 * 10 9 7 35 35 H 1.09002 * 109.47495 * 300.00382 * 10 9 7 36 36 H 1.09005 * 109.46767 * 60.00394 * 11 10 9 37 37 H 1.09002 * 109.47113 * 300.00734 * 11 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 2.7608 -2.4954 2.5896 7 6 2.4038 -1.2534 3.4387 8 1 3.3051 -0.8060 3.8579 9 7 1.4651 -1.6149 4.5092 10 6 1.5649 -0.6775 5.6358 11 6 0.5740 -1.0853 6.7280 12 6 0.6761 -0.1232 7.8834 13 1 1.3772 0.6972 7.8427 14 6 -0.1257 -0.2905 8.9926 15 7 -0.0370 0.5494 10.0008 16 14 -1.3378 -1.7100 9.0633 17 1 -2.6399 -1.2779 8.4950 18 1 -0.8087 -2.8525 8.2758 19 1 -1.5284 -2.1282 10.4754 20 6 1.7480 -0.3083 2.4562 21 8 1.0758 0.6541 2.7610 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 3.8981 -1.6166 0.9544 30 1 2.4980 -2.5978 0.4309 31 1 3.7139 -2.9214 2.9030 32 1 1.9677 -3.2417 2.6374 33 1 1.6139 -2.5649 4.8150 34 1 1.3315 0.3301 5.2918 35 1 2.5780 -0.6987 6.0375 36 1 0.8071 -2.0930 7.0721 37 1 -0.4389 -1.0638 6.3260 38 1 -0.6013 0.4319 10.7809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308826388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -65.174092 kcal Electronic energy + Delta-G solvation = -17567.370396 eV Core-core repulsion = 14829.322977 eV Total energy + Delta-G solvation = -2738.047419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55201 -37.66358 -37.38933 -35.64462 -34.47397 -31.98193 -29.84663 -28.13049 -27.77158 -25.57163 -23.32798 -22.72463 -22.08305 -19.75504 -18.97501 -17.81731 -17.50479 -16.48300 -16.26446 -16.13773 -15.35553 -15.20857 -14.87130 -14.62734 -14.59084 -14.53545 -13.95354 -13.63442 -13.35129 -13.02803 -12.99761 -12.86618 -12.71226 -12.31624 -12.16216 -12.06374 -11.90121 -11.71814 -11.55162 -11.45442 -10.79739 -10.69473 -9.62779 -9.35219 -8.31578 -6.36792 1.35669 1.38315 1.50574 1.63431 2.07830 2.35873 3.03677 3.26829 3.41050 3.64392 3.94621 4.09845 4.12180 4.21418 4.31848 4.40300 4.45953 4.57302 4.68566 4.70064 4.82032 4.86680 4.89155 4.91915 4.99528 5.11126 5.25163 5.27111 5.30451 5.45727 5.61147 5.80929 5.98948 6.20002 6.24724 6.52708 6.71252 7.27695 7.32770 8.85599 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.005043 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.863593 B = 5551.384499 C = 5771.278785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.618 5.618 5 C 0.105 3.895 6 C -0.122 4.122 7 C 0.044 3.956 8 H 0.077 0.923 9 N -0.677 5.677 10 C 0.090 3.910 11 C 0.000 4.000 12 C -0.537 4.537 13 H 0.026 0.974 14 C 0.004 3.996 15 N -0.952 5.952 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.241 1.241 19 H -0.279 1.279 20 C 0.514 3.486 21 O -0.568 6.568 22 H 0.029 0.971 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.127 0.873 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.357 0.643 34 H 0.039 0.961 35 H 0.024 0.976 36 H 0.030 0.970 37 H 0.013 0.987 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -10.347 -24.746 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C -0.223 4.223 4 N -0.353 5.353 5 C -0.017 4.017 6 C -0.160 4.160 7 C -0.069 4.069 8 H 0.094 0.906 9 N -0.311 5.311 10 C -0.039 4.039 11 C -0.038 4.038 12 C -0.576 4.576 13 H 0.045 0.955 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.781 3.219 17 H -0.198 1.198 18 H -0.164 1.164 19 H -0.204 1.204 20 C 0.301 3.699 21 O -0.446 6.446 22 H 0.048 0.952 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.178 0.822 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.583 -9.452 -24.795 27.340 hybrid contribution 0.137 0.164 1.250 1.268 sum 6.719 -9.288 -23.545 26.188 Atomic orbital electron populations 1.22144 0.95686 1.02216 1.02182 1.21132 0.93870 0.93132 0.87092 1.22154 1.01447 0.96365 1.02326 1.48572 1.51305 1.30250 1.05171 1.22336 0.95555 0.85695 0.98126 1.22894 1.05118 0.94987 0.92951 1.22343 0.94030 0.97992 0.92583 0.90551 1.60170 1.53703 1.06773 1.10483 1.21645 0.97158 0.95392 0.89681 1.19399 0.95604 0.96175 0.92648 1.21395 1.21779 1.12549 1.01846 0.95543 1.26053 0.99030 0.99453 0.94689 1.70077 1.41686 1.39472 1.07983 0.85540 0.78748 0.79893 0.77689 1.19808 1.16412 1.20433 1.21240 0.79248 0.84496 0.84946 1.90659 1.40761 1.30865 1.82320 0.95205 0.89489 0.92157 0.85503 0.95060 0.91871 0.89473 0.88917 0.87449 0.86197 0.88557 0.82238 0.94186 0.95748 0.95133 0.96820 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.20 71.98 0.66 -2.85 16 2 C 0.15 2.74 3.47 44.99 0.16 2.90 16 3 C -0.16 -3.35 9.20 71.98 0.66 -2.68 16 4 N -0.62 -13.43 2.83 -794.03 -2.25 -15.68 16 5 C 0.10 1.25 7.30 86.83 0.63 1.88 16 6 C -0.12 -1.76 6.60 31.65 0.21 -1.55 16 7 C 0.04 1.20 3.26 44.91 0.15 1.35 16 8 H 0.08 2.12 7.82 -2.39 -0.02 2.10 16 9 N -0.68 -23.20 6.32 -491.61 -3.11 -26.31 16 10 C 0.09 4.01 5.44 86.30 0.47 4.48 16 11 C 0.00 -0.02 4.30 29.85 0.13 0.10 16 12 C -0.54 -33.28 9.66 25.60 0.25 -33.03 16 13 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 14 C 0.00 0.27 5.47 84.66 0.46 0.74 16 15 N -0.95 -62.29 13.96 21.45 0.30 -61.99 16 16 Si 0.96 46.37 27.47 68.60 1.88 48.25 16 17 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 C 0.51 16.66 7.04 87.90 0.62 17.28 16 21 O -0.57 -24.84 14.43 -3.04 -0.04 -24.89 16 22 H 0.03 0.91 6.80 -2.38 -0.02 0.89 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.13 1.30 8.07 -2.39 -0.02 1.28 16 26 H 0.03 0.91 6.77 -2.39 -0.02 0.89 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16 33 H 0.36 10.12 8.37 -89.69 -0.75 9.37 16 34 H 0.04 2.05 7.49 -2.38 -0.02 2.03 16 35 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.03 1.44 7.20 -2.38 -0.02 1.42 16 37 H 0.01 0.70 7.57 -2.39 -0.02 0.69 16 38 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -82.17 306.20 1.40 -80.76 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.22 Total: 11.24 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.40 Total: -11.38 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -5.06 Total: -103.98 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.04 Total: -24.89 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Total: -82.17 1.40 -80.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308826388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.588 kcal (2) G-P(sol) polarization free energy of solvation -82.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds