Wall clock time and date at job start Mon Mar 30 2020 04:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47374 * 2 1 4 4 O 1.21288 * 120.00067 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00134 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64877 * 359.97334 * 5 3 2 7 7 C 1.54330 * 107.27429 * 178.98968 * 6 5 3 8 8 C 1.55165 * 102.93959 * 337.80821 * 7 6 5 9 9 H 1.09000 * 111.00078 * 277.38891 * 8 7 6 10 10 N 1.46892 * 111.00338 * 153.57699 * 8 7 6 11 11 C 1.46904 * 111.00226 * 86.45433 * 10 8 7 12 12 H 1.08995 * 109.46715 * 34.99961 * 11 10 8 13 13 C 1.52999 * 109.46652 * 274.99776 * 11 10 8 14 14 C 1.50697 * 109.46891 * 154.99958 * 11 10 8 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.47433 * 125.64971 * 180.02562 * 5 3 2 23 23 H 1.09009 * 109.46594 * 299.99813 * 1 2 3 24 24 H 1.09000 * 109.47572 * 59.99472 * 1 2 3 25 25 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46594 * 240.00187 * 2 1 3 27 27 H 1.08991 * 109.47421 * 120.00602 * 2 1 3 28 28 H 1.08994 * 109.88391 * 59.57150 * 6 5 3 29 29 H 1.08999 * 110.01249 * 298.47834 * 6 5 3 30 30 H 1.08996 * 110.72089 * 219.44559 * 7 6 5 31 31 H 1.08996 * 110.72133 * 96.16593 * 7 6 5 32 32 H 1.00906 * 111.00021 * 322.49561 * 10 8 7 33 33 H 1.09000 * 109.47280 * 299.99623 * 13 11 10 34 34 H 1.08998 * 109.47206 * 60.00029 * 13 11 10 35 35 H 1.08998 * 109.46841 * 179.97438 * 13 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36475 * 85.24124 * 22 5 3 38 38 H 1.08999 * 110.36272 * 322.91942 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6490 -0.0006 7 6 5.7690 1.3947 -0.0272 8 6 5.3892 2.7809 -0.6118 9 1 5.3412 2.7460 -1.7002 10 7 6.3280 3.8172 -0.1619 11 6 7.4985 3.8873 -1.0469 12 1 7.1915 3.6811 -2.0722 13 6 8.5338 2.8507 -0.6061 14 6 8.1036 5.2654 -0.9712 15 1 7.6631 6.0141 -0.3295 16 6 9.2203 5.5700 -1.7203 17 7 9.7482 6.7728 -1.6547 18 14 9.9827 4.2747 -2.8297 19 1 11.0059 3.5124 -2.0699 20 1 8.9259 3.3462 -3.3054 21 1 10.6223 4.9357 -3.9954 22 6 3.9833 3.0018 -0.0001 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 4.3258 0.0175 -0.8841 29 1 4.3494 0.0386 0.8999 30 1 6.4790 0.8834 -0.6773 31 1 6.1722 1.4984 0.9801 32 1 6.6071 3.6614 0.7952 33 1 8.8408 3.0569 0.4192 34 1 8.0961 1.8539 -0.6608 35 1 9.4021 2.9023 -1.2630 36 1 10.5336 6.9871 -2.1820 37 1 4.0681 3.3807 1.0185 38 1 3.4059 3.6917 -0.6155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309035347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:15 Heat of formation + Delta-G solvation = -31.858593 kcal Electronic energy + Delta-G solvation = -17537.504438 eV Core-core repulsion = 14800.901687 eV Total energy + Delta-G solvation = -2736.602750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07901 -37.97354 -35.53054 -33.03241 -32.43982 -30.73568 -29.50973 -27.30860 -25.23715 -24.41240 -22.63806 -20.69634 -20.42452 -19.10722 -17.32960 -16.66955 -16.36418 -15.54991 -15.14491 -14.78582 -14.28745 -13.72182 -13.55009 -13.14944 -12.84948 -12.70493 -12.56226 -12.42096 -12.15406 -12.05121 -11.83633 -11.51497 -11.37734 -11.35023 -11.05545 -10.68030 -10.42472 -10.16949 -9.83101 -9.53346 -9.16676 -8.63117 -8.60112 -7.57187 -6.07350 -4.05311 2.62344 2.96382 3.21929 3.31016 3.35502 4.36835 4.37636 4.53854 4.79971 4.83494 4.90635 4.96624 5.12706 5.22371 5.27715 5.39669 5.53256 5.56780 5.58942 5.73642 5.81948 5.94562 6.02522 6.08433 6.14445 6.22649 6.23911 6.38277 6.44694 6.66364 7.04884 7.51329 7.64916 7.83264 8.15126 8.21378 8.64429 9.04237 9.54510 11.06213 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050752 B = 0.004834 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.573852 B = 5790.678431 C = 6039.410032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.524 3.476 4 O -0.543 6.543 5 N -0.620 5.620 6 C 0.104 3.896 7 C -0.167 4.167 8 C 0.080 3.920 9 H 0.089 0.911 10 N -0.659 5.659 11 C 0.185 3.815 12 H 0.034 0.966 13 C -0.186 4.186 14 C -0.501 4.501 15 H 0.082 0.918 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.270 1.270 21 H -0.297 1.297 22 C 0.114 3.886 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.336 0.664 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -17.080 3.216 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.312 3.688 4 O -0.420 6.420 5 N -0.355 5.355 6 C -0.020 4.020 7 C -0.207 4.207 8 C -0.033 4.033 9 H 0.107 0.893 10 N -0.287 5.287 11 C 0.076 3.924 12 H 0.052 0.948 13 C -0.244 4.244 14 C -0.540 4.540 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.538 5.538 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.195 1.195 21 H -0.224 1.224 22 C -0.009 4.009 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.548 -15.934 2.827 19.881 hybrid contribution 1.306 -1.602 -0.347 2.096 sum -10.242 -17.536 2.480 20.459 Atomic orbital electron populations 1.21535 0.93083 1.01397 1.03418 1.21605 0.98434 0.93832 1.04076 1.20422 0.80444 0.91811 0.76079 1.90709 1.54355 1.46769 1.50214 1.48575 1.05028 1.08760 1.73120 1.21995 0.87434 0.91300 1.01269 1.23598 0.95653 0.98884 1.02577 1.22803 0.92309 0.88555 0.99631 0.89276 1.60449 1.17397 1.44671 1.06212 1.19681 0.85344 0.95306 0.92032 0.94781 1.22982 1.01217 0.98486 1.01751 1.20981 1.10876 0.95539 1.26556 0.89970 1.24946 0.96721 0.95220 0.96512 1.69883 1.22717 1.19743 1.41489 0.86883 0.79574 0.81550 0.80217 1.20792 1.19543 1.22422 1.22228 0.93263 0.83713 1.01699 0.91993 0.91951 0.92193 0.89129 0.89175 0.91570 0.91645 0.89887 0.90374 0.84577 0.92718 0.95012 0.93711 0.92644 0.91087 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.26 5.61 -27.89 -0.16 -1.42 16 3 C 0.52 7.11 7.85 -10.99 -0.09 7.02 16 4 O -0.54 -9.57 16.24 5.55 0.09 -9.48 16 5 N -0.62 -8.06 3.33 -170.52 -0.57 -8.63 16 6 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 7 C -0.17 -1.98 5.32 -24.89 -0.13 -2.12 16 8 C 0.08 1.22 3.31 -65.57 -0.22 1.00 16 9 H 0.09 1.46 7.56 -51.93 -0.39 1.06 16 10 N -0.66 -12.41 6.14 -98.71 -0.61 -13.01 16 11 C 0.19 4.11 2.17 -68.86 -0.15 3.96 16 12 H 0.03 0.80 6.56 -51.93 -0.34 0.46 16 13 C -0.19 -3.69 8.45 37.16 0.31 -3.37 16 14 C -0.50 -13.79 9.42 -34.44 -0.32 -14.12 16 15 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 16 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 17 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 18 Si 0.89 21.42 24.37 -169.99 -4.14 17.27 16 19 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 20 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 21 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 22 C 0.11 1.70 6.60 -2.53 -0.02 1.69 16 23 H 0.06 0.61 8.10 -51.92 -0.42 0.19 16 24 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.96 6.80 -51.93 -0.35 0.61 16 31 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 32 H 0.34 5.88 8.05 -39.29 -0.32 5.56 16 33 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.03 0.52 5.61 -51.93 -0.29 0.23 16 35 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -31.78 297.65 -6.60 -38.39 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.09 Total: 2.92 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.54 Total: -5.39 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.40 Total: -48.20 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.78 -6.60 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds