Wall clock time and date at job start Mon Mar 30 2020 04:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47374 * 2 1 4 4 O 1.21288 * 120.00067 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00134 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64877 * 359.97334 * 5 3 2 7 7 C 1.54330 * 107.27429 * 178.98968 * 6 5 3 8 8 C 1.55165 * 102.93959 * 337.80821 * 7 6 5 9 9 H 1.09000 * 111.00078 * 277.38891 * 8 7 6 10 10 N 1.46892 * 111.00338 * 153.57699 * 8 7 6 11 11 C 1.46904 * 111.00226 * 86.45433 * 10 8 7 12 12 H 1.08995 * 109.46715 * 34.99961 * 11 10 8 13 13 C 1.52999 * 109.46652 * 274.99776 * 11 10 8 14 14 C 1.50697 * 109.46891 * 154.99958 * 11 10 8 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.47433 * 125.64971 * 180.02562 * 5 3 2 23 23 H 1.09009 * 109.46594 * 299.99813 * 1 2 3 24 24 H 1.09000 * 109.47572 * 59.99472 * 1 2 3 25 25 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46594 * 240.00187 * 2 1 3 27 27 H 1.08991 * 109.47421 * 120.00602 * 2 1 3 28 28 H 1.08994 * 109.88391 * 59.57150 * 6 5 3 29 29 H 1.08999 * 110.01249 * 298.47834 * 6 5 3 30 30 H 1.08996 * 110.72089 * 219.44559 * 7 6 5 31 31 H 1.08996 * 110.72133 * 96.16593 * 7 6 5 32 32 H 1.00906 * 111.00021 * 322.49561 * 10 8 7 33 33 H 1.09000 * 109.47280 * 299.99623 * 13 11 10 34 34 H 1.08998 * 109.47206 * 60.00029 * 13 11 10 35 35 H 1.08998 * 109.46841 * 179.97438 * 13 11 10 36 36 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36475 * 85.24124 * 22 5 3 38 38 H 1.08999 * 110.36272 * 322.91942 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6490 -0.0006 7 6 5.7690 1.3947 -0.0272 8 6 5.3892 2.7809 -0.6118 9 1 5.3412 2.7460 -1.7002 10 7 6.3280 3.8172 -0.1619 11 6 7.4985 3.8873 -1.0469 12 1 7.1915 3.6811 -2.0722 13 6 8.5338 2.8507 -0.6061 14 6 8.1036 5.2654 -0.9712 15 1 7.6631 6.0141 -0.3295 16 6 9.2203 5.5700 -1.7203 17 7 9.7482 6.7728 -1.6547 18 14 9.9827 4.2747 -2.8297 19 1 11.0059 3.5124 -2.0699 20 1 8.9259 3.3462 -3.3054 21 1 10.6223 4.9357 -3.9954 22 6 3.9833 3.0018 -0.0001 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 4.3258 0.0175 -0.8841 29 1 4.3494 0.0386 0.8999 30 1 6.4790 0.8834 -0.6773 31 1 6.1722 1.4984 0.9801 32 1 6.6071 3.6614 0.7952 33 1 8.8408 3.0569 0.4192 34 1 8.0961 1.8539 -0.6608 35 1 9.4021 2.9023 -1.2630 36 1 10.5336 6.9871 -2.1820 37 1 4.0681 3.3807 1.0185 38 1 3.4059 3.6917 -0.6155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309035347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:14 Heat of formation + Delta-G solvation = -56.131426 kcal Electronic energy + Delta-G solvation = -17538.556987 eV Core-core repulsion = 14800.901687 eV Total energy + Delta-G solvation = -2737.655299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13874 -39.19920 -37.01549 -34.49879 -33.71015 -32.16267 -30.64721 -28.61534 -27.11387 -25.43378 -23.53906 -22.21668 -21.89145 -20.06797 -18.78058 -18.20344 -17.48478 -16.94313 -16.44660 -15.91295 -15.81868 -15.04177 -14.67349 -14.57137 -14.30211 -13.99358 -13.84792 -13.57381 -13.37504 -13.12126 -12.95244 -12.82044 -12.65443 -12.50687 -12.18977 -12.04074 -11.95340 -11.71776 -11.43735 -11.04618 -10.90940 -10.73201 -9.68094 -9.04138 -8.25568 -6.28736 1.31303 1.37682 1.47861 1.62131 1.97251 2.34036 3.08946 3.32392 3.54785 3.72161 3.93184 4.08521 4.22456 4.24957 4.31018 4.38979 4.52992 4.59794 4.62490 4.72045 4.75723 4.81883 4.91294 4.97544 4.99898 5.06574 5.09937 5.17233 5.26279 5.37675 5.44670 5.68531 6.02572 6.53862 6.69397 6.73624 6.79971 7.14856 7.36559 8.92170 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050752 B = 0.004834 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.573852 B = 5790.678431 C = 6039.410032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.513 3.487 4 O -0.597 6.597 5 N -0.620 5.620 6 C 0.104 3.896 7 C -0.158 4.158 8 C 0.079 3.921 9 H 0.079 0.921 10 N -0.677 5.677 11 C 0.192 3.808 12 H 0.028 0.972 13 C -0.178 4.178 14 C -0.508 4.508 15 H 0.032 0.968 16 C 0.005 3.995 17 N -0.954 5.954 18 Si 0.957 3.043 19 H -0.264 1.264 20 H -0.246 1.246 21 H -0.303 1.303 22 C 0.117 3.883 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.343 0.657 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -21.651 3.065 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.304 3.696 4 O -0.478 6.478 5 N -0.354 5.354 6 C -0.018 4.018 7 C -0.198 4.198 8 C -0.032 4.032 9 H 0.097 0.903 10 N -0.307 5.307 11 C 0.083 3.917 12 H 0.046 0.954 13 C -0.237 4.237 14 C -0.547 4.547 15 H 0.050 0.950 16 C -0.192 4.192 17 N -0.595 5.595 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.170 1.170 21 H -0.232 1.232 22 C -0.007 4.007 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.410 -20.560 2.696 23.668 hybrid contribution 1.156 -0.074 -0.228 1.180 sum -10.254 -20.634 2.468 23.173 Atomic orbital electron populations 1.21555 0.93434 1.02775 1.01736 1.21678 0.98029 0.90542 1.06595 1.21417 0.80029 0.93370 0.74775 1.90687 1.55691 1.48801 1.52644 1.48679 1.05719 1.08420 1.72551 1.22222 0.84966 0.90510 1.04063 1.23516 0.97188 0.96173 1.02891 1.22691 0.91358 0.90055 0.99118 0.90327 1.60195 1.16759 1.47546 1.06186 1.19404 0.86914 0.92920 0.92499 0.95387 1.22825 0.99812 0.99709 1.01334 1.21341 1.10736 0.97469 1.25148 0.95012 1.25883 0.97408 0.97505 0.98356 1.70066 1.23714 1.22481 1.43270 0.85747 0.79322 0.78872 0.77678 1.18969 1.16978 1.23161 1.21976 0.93099 0.84935 1.00670 0.93657 0.93806 0.89138 0.86501 0.86277 0.89038 0.88550 0.88531 0.89576 0.83821 0.92616 0.90751 0.94871 0.92675 0.91698 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.20 71.98 0.66 -1.50 16 2 C -0.13 -1.85 5.61 29.85 0.17 -1.69 16 3 C 0.51 13.12 7.85 87.66 0.69 13.81 16 4 O -0.60 -21.41 16.24 -3.06 -0.05 -21.46 16 5 N -0.62 -14.75 3.33 -811.80 -2.70 -17.45 16 6 C 0.10 1.59 6.49 86.73 0.56 2.16 16 7 C -0.16 -3.08 5.32 31.79 0.17 -2.91 16 8 C 0.08 2.31 3.31 46.31 0.15 2.46 16 9 H 0.08 2.46 7.56 -2.39 -0.02 2.44 16 10 N -0.68 -25.26 6.14 -466.22 -2.86 -28.12 16 11 C 0.19 8.36 2.17 44.17 0.10 8.45 16 12 H 0.03 1.27 6.56 -2.39 -0.02 1.25 16 13 C -0.18 -6.51 8.45 71.98 0.61 -5.90 16 14 C -0.51 -28.79 9.42 25.60 0.24 -28.55 16 15 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 16 C 0.00 0.28 5.45 84.65 0.46 0.74 16 17 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 18 Si 0.96 43.77 24.37 68.60 1.67 45.44 16 19 H -0.26 -11.29 6.87 99.48 0.68 -10.61 16 20 H -0.25 -10.19 6.53 99.48 0.65 -9.54 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 22 C 0.12 3.49 6.60 86.85 0.57 4.07 16 23 H 0.04 0.85 8.10 -2.38 -0.02 0.83 16 24 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 25 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.68 6.80 -2.39 -0.02 1.66 16 31 H 0.09 1.59 7.81 -2.39 -0.02 1.57 16 32 H 0.34 11.77 8.05 -89.69 -0.72 11.05 16 33 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.07 2.07 5.61 -2.39 -0.01 2.06 16 35 H 0.03 1.29 3.27 -2.39 -0.01 1.28 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 Total: -1.00 -74.23 297.65 0.98 -73.25 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.24 Total: 17.01 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.38 Total: -8.87 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -5.26 Total: -105.38 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.44 kcal Total: -74.23 0.98 -73.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.120 kcal (2) G-P(sol) polarization free energy of solvation -74.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds