Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.74261 * 2 1 4 4 C 1.50816 * 109.74784 * 120.73606 * 2 1 3 5 5 C 1.53819 * 111.61586 * 214.70509 * 4 2 1 6 6 C 1.54267 * 112.02865 * 318.99240 * 5 4 2 7 7 C 1.50757 * 112.56279 * 318.61807 * 6 5 4 8 8 C 1.54437 * 109.11325 * 92.90877 * 7 6 5 9 9 N 1.39781 * 111.75951 * 282.57558 * 8 7 6 10 10 C 1.46898 * 111.00320 * 189.14067 * 9 8 7 11 11 C 1.50704 * 109.47027 * 66.04449 * 10 9 8 12 12 O 1.21288 * 119.99995 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99578 * 180.02562 * 11 10 9 14 14 C 1.37094 * 119.99514 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00729 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99984 * 180.02562 * 14 13 11 17 17 N 1.31412 * 119.99960 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00244 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47255 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47024 * 119.99524 * 18 16 14 21 21 H 1.48494 * 109.47181 * 239.99578 * 18 16 14 22 22 H 1.09006 * 109.47230 * 180.68241 * 1 2 3 23 23 H 1.08991 * 109.47171 * 300.68423 * 1 2 3 24 24 H 1.09005 * 109.47074 * 60.68761 * 1 2 3 25 25 H 1.08995 * 109.05035 * 335.25145 * 4 2 1 26 26 H 1.09004 * 109.05275 * 94.22776 * 4 2 1 27 27 H 1.08994 * 108.98485 * 79.68470 * 5 4 2 28 28 H 1.09001 * 108.98077 * 198.48720 * 5 4 2 29 29 H 1.08996 * 108.99444 * 197.73876 * 6 5 4 30 30 H 1.09005 * 108.76789 * 79.33096 * 6 5 4 31 31 H 1.09002 * 109.54238 * 332.99392 * 7 6 5 32 32 H 1.08999 * 109.53910 * 212.81903 * 7 6 5 33 33 H 1.08995 * 109.02726 * 43.16596 * 8 7 6 34 34 H 1.08998 * 109.02189 * 162.06642 * 8 7 6 35 35 H 1.08995 * 109.47306 * 186.04470 * 10 9 8 36 36 H 1.09001 * 109.46868 * 306.04485 * 10 9 8 37 37 H 0.96992 * 120.00218 * 0.02562 * 13 11 10 38 38 H 0.96997 * 120.00438 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0396 -0.7255 1.2201 5 6 3.3375 -0.0952 1.7532 6 6 4.2972 0.3047 0.6135 7 6 4.3588 -0.7305 -0.4808 8 6 3.3306 -0.3710 -1.5756 9 7 2.0288 -0.7090 -1.1949 10 6 1.0965 -0.5636 -2.3208 11 6 1.4330 -1.5757 -3.3855 12 8 2.3581 -2.3430 -3.2222 13 7 0.7059 -1.6282 -4.5192 14 6 1.0117 -2.5493 -5.4875 15 1 1.8354 -3.2326 -5.3422 16 6 0.2624 -2.6032 -6.6565 17 7 -0.7395 -1.7715 -6.8336 18 14 0.6795 -3.8576 -7.9762 19 1 1.8425 -4.6699 -7.5373 20 1 -0.4888 -4.7463 -8.2012 21 1 1.0165 -3.1537 -9.2395 22 1 -0.3634 -1.0276 0.0122 23 1 -0.3633 0.5244 0.8837 24 1 -0.3633 0.5031 -0.8961 25 1 1.2792 -0.6874 2.0000 26 1 2.2313 -1.7667 0.9607 27 1 3.0880 0.7923 2.3345 28 1 3.8402 -0.8133 2.4011 29 1 5.2973 0.4433 1.0240 30 1 3.9600 1.2491 0.1862 31 1 4.1241 -1.7117 -0.0681 32 1 5.3599 -0.7463 -0.9118 33 1 3.3774 0.7007 -1.7688 34 1 3.5830 -0.9078 -2.4900 35 1 0.0771 -0.7284 -1.9721 36 1 1.1809 0.4411 -2.7349 37 1 -0.0336 -1.0144 -4.6499 38 1 -1.2623 -1.8088 -7.6498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334345251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -54.830704 kcal Electronic energy + Delta-G solvation = -18009.339820 eV Core-core repulsion = 15271.740924 eV Total energy + Delta-G solvation = -2737.598896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14916 -39.41688 -36.06520 -35.37720 -34.10904 -33.24445 -29.76355 -28.94891 -26.93058 -25.34440 -24.16412 -21.77554 -20.77220 -20.10283 -19.81709 -17.95711 -16.89410 -16.75359 -16.50520 -15.90579 -15.69418 -15.51650 -15.08625 -14.63202 -14.17179 -14.05560 -13.58483 -13.49354 -13.23202 -12.97670 -12.86547 -12.51113 -12.40500 -12.31370 -12.11888 -11.97612 -11.54879 -11.45588 -11.39734 -11.20037 -11.06893 -10.21023 -9.98098 -8.97089 -8.45625 -5.94156 1.36572 1.41423 1.55774 2.06981 2.29128 2.80211 3.21085 3.43665 3.86555 3.91958 4.07817 4.16573 4.23144 4.30929 4.41880 4.47961 4.51750 4.53998 4.62948 4.76117 4.88638 4.98472 5.01041 5.01465 5.17144 5.22382 5.26087 5.35888 5.41343 5.42985 5.53364 5.61048 5.96067 6.25993 6.62169 6.65021 7.14496 7.58140 8.14481 8.72108 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044273 B = 0.005423 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.286578 B = 5161.849882 C = 5560.032913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 H 0.053 0.947 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.072 3.928 9 N -0.541 5.541 10 C 0.053 3.947 11 C 0.439 3.561 12 O -0.614 6.614 13 N -0.576 5.576 14 C -0.331 4.331 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.922 5.922 18 Si 0.993 3.007 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.010 0.990 34 H 0.054 0.946 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 7.153 14.434 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.058 4.058 9 N -0.267 5.267 10 C -0.077 4.077 11 C 0.227 3.773 12 O -0.500 6.500 13 N -0.213 5.213 14 C -0.461 4.461 15 H 0.095 0.905 16 C -0.213 4.213 17 N -0.563 5.563 18 Si 0.816 3.184 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.196 1.196 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.215 6.225 14.524 16.126 hybrid contribution -0.212 0.369 -1.374 1.439 sum 3.003 6.594 13.150 15.014 Atomic orbital electron populations 1.22158 0.93641 1.02513 1.03079 1.21464 0.95481 0.95437 0.89158 0.92909 1.21459 0.97579 0.99824 0.96116 1.21909 0.94929 1.00999 0.97141 1.21426 1.00155 0.97962 0.95846 1.21352 0.97534 0.99926 0.95713 1.21028 0.89027 0.96399 0.99315 1.58386 1.01740 1.61567 1.04958 1.21928 0.99280 0.96014 0.90483 1.20912 0.84535 0.87863 0.83995 1.90452 1.33174 1.46103 1.80250 1.41947 1.30580 1.33146 1.15656 1.19681 1.15467 1.13709 0.97195 0.90474 1.26021 0.95371 0.99838 1.00026 1.69678 1.19806 1.38141 1.28664 0.84876 0.78243 0.77752 0.77486 1.19910 1.19538 1.19597 0.92482 0.89536 0.92050 0.90003 0.92917 0.90742 0.91702 0.90988 0.92746 0.92245 0.91664 0.97190 0.92748 0.86293 0.92329 0.77107 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 7.67 71.98 0.55 -2.84 16 2 C 0.09 2.29 2.47 44.07 0.11 2.39 16 3 H 0.05 1.26 6.67 -2.39 -0.02 1.24 16 4 C -0.11 -2.52 4.98 30.16 0.15 -2.36 16 5 C -0.11 -2.14 5.91 31.30 0.19 -1.96 16 6 C -0.12 -2.53 5.33 30.30 0.16 -2.36 16 7 C -0.11 -3.08 5.64 30.35 0.17 -2.91 16 8 C 0.07 2.52 4.60 88.07 0.40 2.92 16 9 N -0.54 -18.45 3.68 -892.43 -3.29 -21.73 16 10 C 0.05 1.96 4.64 85.56 0.40 2.36 16 11 C 0.44 21.72 7.39 87.66 0.65 22.37 16 12 O -0.61 -34.94 13.92 -3.05 -0.04 -34.98 16 13 N -0.58 -30.40 5.29 -306.98 -1.62 -32.02 16 14 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 15 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 17 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 18 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H 0.06 1.36 7.95 -2.38 -0.02 1.34 16 23 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 24 H 0.06 1.33 6.38 -2.38 -0.02 1.31 16 25 H 0.08 1.49 7.71 -2.39 -0.02 1.47 16 26 H 0.05 1.47 7.26 -2.39 -0.02 1.46 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.19 6.59 -2.38 -0.02 1.17 16 31 H 0.06 1.88 7.11 -2.39 -0.02 1.86 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.01 0.34 7.55 -2.39 -0.02 0.32 16 34 H 0.05 2.41 5.53 -2.39 -0.01 2.39 16 35 H 0.12 3.87 5.32 -2.39 -0.01 3.86 16 36 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 37 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 38 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -66.47 290.84 1.74 -64.73 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.32 Total: 29.50 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.06 Total: -1.02 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.63 Total: -103.91 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.04 Total: -34.98 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.47 1.74 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334345251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds