Wall clock time and date at job start Mon Mar 30 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47135 * 2 1 4 4 N 1.46897 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.47448 * 110.99829 * 69.87788 * 4 3 2 6 6 C 1.54313 * 107.23474 * 123.25875 * 5 4 3 7 7 C 1.55136 * 103.02123 * 22.28169 * 6 5 4 8 8 C 1.47844 * 111.00106 * 190.71908 * 4 3 2 9 9 H 1.09008 * 110.37229 * 332.46617 * 8 4 3 10 10 C 1.50689 * 110.37503 * 94.80662 * 8 4 3 11 11 O 1.21290 * 120.00350 * 19.67309 * 10 8 4 12 12 N 1.34777 * 120.00331 * 199.66522 * 10 8 4 13 13 C 1.46500 * 119.99533 * 5.23693 * 12 10 8 14 14 C 1.37098 * 120.00481 * 185.22744 * 12 10 8 15 15 H 1.07997 * 119.99979 * 339.28215 * 14 12 10 16 16 C 1.38945 * 119.99990 * 159.27120 * 14 12 10 17 17 N 1.31414 * 120.00207 * 343.83361 * 16 14 12 18 18 Si 1.86807 * 120.00138 * 163.83045 * 16 14 12 19 19 H 1.48492 * 109.47041 * 94.97415 * 18 16 14 20 20 H 1.48502 * 109.47151 * 214.97831 * 18 16 14 21 21 H 1.48499 * 109.46633 * 334.97553 * 18 16 14 22 22 H 1.09001 * 109.46620 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46953 * 299.99612 * 1 2 3 24 24 H 1.08999 * 109.47138 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.47180 * 239.99974 * 2 1 3 26 26 H 1.09008 * 109.47287 * 119.99877 * 2 1 3 27 27 H 1.09004 * 109.47108 * 59.99930 * 3 2 1 28 28 H 1.08995 * 109.47104 * 300.00268 * 3 2 1 29 29 H 1.09004 * 109.88343 * 242.66207 * 5 4 3 30 30 H 1.09002 * 109.88857 * 3.84745 * 5 4 3 31 31 H 1.09001 * 110.70486 * 140.66725 * 6 5 4 32 32 H 1.08997 * 110.70621 * 263.90136 * 6 5 4 33 33 H 1.09002 * 110.99280 * 82.43817 * 7 6 5 34 34 H 1.08997 * 110.99272 * 206.25493 * 7 6 5 35 35 H 1.08994 * 109.47442 * 26.12962 * 13 12 10 36 36 H 1.09011 * 109.47276 * 146.13307 * 13 12 10 37 37 H 1.09004 * 109.47286 * 266.12785 * 13 12 10 38 38 H 0.97004 * 119.99990 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0379 0.9688 -1.2916 6 6 4.9565 2.0788 -1.8442 7 6 5.3449 2.8768 -0.5718 8 6 4.0387 2.7988 0.2574 9 1 3.3288 3.5537 -0.0809 10 6 4.3366 2.9767 1.7237 11 8 4.4801 2.0054 2.4358 12 7 4.4437 4.2153 2.2442 13 6 4.1581 5.3867 1.4120 14 6 4.8199 4.3791 3.5524 15 1 4.7089 3.5641 4.2522 16 6 5.3441 5.5936 3.9777 17 7 5.7756 6.4677 3.0964 18 14 5.4355 5.9838 5.8022 19 1 6.7810 5.6258 6.3182 20 1 5.1951 7.4344 6.0108 21 1 4.4027 5.2016 6.5279 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.6102 0.0528 -1.1446 30 1 3.2163 0.7881 -1.9848 31 1 5.8409 1.6486 -2.3143 32 1 4.4154 2.7128 -2.5465 33 1 6.1702 2.3963 -0.0462 34 1 5.5898 3.9099 -0.8184 35 1 3.4645 5.1083 0.6186 36 1 3.7122 6.1690 2.0265 37 1 5.0850 5.7545 0.9719 38 1 6.1412 7.3157 3.3934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337540400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:01 Heat of formation + Delta-G solvation = -24.794385 kcal Electronic energy + Delta-G solvation = -18138.899619 eV Core-core repulsion = 15402.603196 eV Total energy + Delta-G solvation = -2736.296423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.42753 -37.32762 -34.46527 -34.24731 -31.55446 -30.46783 -28.98977 -26.16614 -25.28968 -24.39725 -21.92228 -21.49127 -20.01103 -18.38731 -16.85026 -16.53206 -15.60301 -15.23655 -14.58699 -14.16249 -14.10444 -13.72703 -13.41117 -12.84998 -12.67482 -12.56906 -12.22208 -11.88660 -11.57667 -11.35027 -11.15272 -11.12882 -11.04353 -10.90252 -10.83216 -10.53234 -10.47539 -10.37631 -10.30201 -10.09482 -8.95909 -8.35252 -7.69781 -7.57049 -6.24102 -3.76793 3.20645 3.29303 3.36085 3.93542 4.06733 4.33489 4.86411 4.99066 5.11201 5.14994 5.20422 5.24570 5.29216 5.53189 5.55706 5.62569 5.78717 5.81573 5.88820 5.91750 5.99961 6.06730 6.10945 6.21744 6.29417 6.38353 6.40749 6.47755 6.57480 6.90706 7.23828 7.31062 7.47487 7.64944 8.24287 8.60810 9.30935 9.53854 10.13788 10.79958 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.006691 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.229422 B = 4183.681389 C = 4708.348614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.055 3.945 4 N -0.505 5.505 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.111 4.111 8 C 0.062 3.938 9 H 0.063 0.937 10 C 0.462 3.538 11 O -0.566 6.566 12 N -0.454 5.454 13 C 0.113 3.887 14 C -0.303 4.303 15 H 0.098 0.902 16 C 0.029 3.971 17 N -0.884 5.884 18 Si 0.922 3.078 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.270 1.270 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -4.836 -10.343 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.229 5.229 5 C -0.083 4.083 6 C -0.180 4.180 7 C -0.149 4.149 8 C -0.050 4.050 9 H 0.080 0.920 10 C 0.248 3.752 11 O -0.448 6.448 12 N -0.175 5.175 13 C -0.031 4.031 14 C -0.431 4.431 15 H 0.116 0.884 16 C -0.174 4.174 17 N -0.524 5.524 18 Si 0.749 3.251 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.195 1.195 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.649 -5.454 -9.560 12.372 hybrid contribution -0.162 1.103 0.132 1.122 sum -5.811 -4.351 -9.429 11.900 Atomic orbital electron populations 1.21737 0.96049 1.01361 1.01620 1.21491 0.94828 0.96616 1.02605 1.22269 0.87724 0.97036 1.00269 1.63121 1.06899 1.22948 1.29971 1.22833 0.97545 0.98413 0.89476 1.22798 0.99838 0.97692 0.97669 1.22550 0.97124 1.00737 0.94537 1.22521 0.96577 0.89781 0.96075 0.91963 1.19730 0.83823 0.83663 0.87938 1.90502 1.54455 1.38944 1.60859 1.43586 1.59136 1.03768 1.10961 1.21495 0.99264 0.89092 0.93229 1.19629 1.39248 0.99539 0.84687 0.88402 1.25265 0.95803 0.96607 0.99693 1.70023 1.39578 1.09137 1.33663 0.85985 0.78732 0.77471 0.82936 1.20496 1.20914 1.19460 0.92809 0.92611 0.93178 0.92416 0.90875 0.90957 0.95439 0.90762 0.93064 0.90840 0.91733 0.90212 0.90406 0.95721 0.91825 0.92292 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.58 5.96 -26.73 -0.16 -1.74 16 3 C 0.06 0.87 4.54 -3.83 -0.02 0.85 16 4 N -0.51 -9.14 4.41 -224.75 -0.99 -10.13 16 5 C 0.05 0.65 6.21 -2.84 -0.02 0.63 16 6 C -0.14 -1.89 6.94 -24.91 -0.17 -2.07 16 7 C -0.11 -1.91 6.48 -24.59 -0.16 -2.07 16 8 C 0.06 1.21 2.07 -67.34 -0.14 1.07 16 9 H 0.06 1.15 5.80 -51.92 -0.30 0.84 16 10 C 0.46 11.70 6.89 -10.99 -0.08 11.62 16 11 O -0.57 -16.49 16.27 5.55 0.09 -16.40 16 12 N -0.45 -11.93 3.02 -122.20 -0.37 -12.30 16 13 C 0.11 2.57 8.53 59.85 0.51 3.08 16 14 C -0.30 -8.68 9.32 -14.93 -0.14 -8.81 16 15 H 0.10 2.95 7.37 -52.49 -0.39 2.57 16 16 C 0.03 0.78 5.03 -17.47 -0.09 0.69 16 17 N -0.88 -23.90 10.77 55.50 0.60 -23.30 16 18 Si 0.92 21.16 29.58 -169.99 -5.03 16.13 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.71 7.14 -51.93 -0.37 0.34 16 26 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 27 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 28 H 0.03 0.39 7.96 -51.93 -0.41 -0.03 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.64 6.91 -51.93 -0.36 0.28 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.47 5.85 -51.93 -0.30 0.17 16 36 H 0.06 1.51 7.19 -51.92 -0.37 1.14 16 37 H 0.06 1.38 7.47 -51.93 -0.39 0.99 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -31.64 302.52 -7.48 -39.12 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.25 Total: 0.34 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.09 Total: 1.97 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.76 Total: -45.73 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.64 -7.48 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337540400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.328 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds