Wall clock time and date at job start Mon Mar 30 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47135 * 2 1 4 4 N 1.46897 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.47448 * 110.99829 * 69.87788 * 4 3 2 6 6 C 1.54313 * 107.23474 * 123.25875 * 5 4 3 7 7 C 1.55136 * 103.02123 * 22.28169 * 6 5 4 8 8 C 1.47844 * 111.00106 * 190.71908 * 4 3 2 9 9 H 1.09008 * 110.37229 * 332.46617 * 8 4 3 10 10 C 1.50689 * 110.37503 * 94.80662 * 8 4 3 11 11 O 1.21290 * 120.00350 * 19.67309 * 10 8 4 12 12 N 1.34777 * 120.00331 * 199.66522 * 10 8 4 13 13 C 1.46500 * 119.99533 * 5.23693 * 12 10 8 14 14 C 1.37098 * 120.00481 * 185.22744 * 12 10 8 15 15 H 1.07997 * 119.99979 * 339.28215 * 14 12 10 16 16 C 1.38945 * 119.99990 * 159.27120 * 14 12 10 17 17 N 1.31414 * 120.00207 * 343.83361 * 16 14 12 18 18 Si 1.86807 * 120.00138 * 163.83045 * 16 14 12 19 19 H 1.48492 * 109.47041 * 94.97415 * 18 16 14 20 20 H 1.48502 * 109.47151 * 214.97831 * 18 16 14 21 21 H 1.48499 * 109.46633 * 334.97553 * 18 16 14 22 22 H 1.09001 * 109.46620 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46953 * 299.99612 * 1 2 3 24 24 H 1.08999 * 109.47138 * 60.00325 * 1 2 3 25 25 H 1.09004 * 109.47180 * 239.99974 * 2 1 3 26 26 H 1.09008 * 109.47287 * 119.99877 * 2 1 3 27 27 H 1.09004 * 109.47108 * 59.99930 * 3 2 1 28 28 H 1.08995 * 109.47104 * 300.00268 * 3 2 1 29 29 H 1.09004 * 109.88343 * 242.66207 * 5 4 3 30 30 H 1.09002 * 109.88857 * 3.84745 * 5 4 3 31 31 H 1.09001 * 110.70486 * 140.66725 * 6 5 4 32 32 H 1.08997 * 110.70621 * 263.90136 * 6 5 4 33 33 H 1.09002 * 110.99280 * 82.43817 * 7 6 5 34 34 H 1.08997 * 110.99272 * 206.25493 * 7 6 5 35 35 H 1.08994 * 109.47442 * 26.12962 * 13 12 10 36 36 H 1.09011 * 109.47276 * 146.13307 * 13 12 10 37 37 H 1.09004 * 109.47286 * 266.12785 * 13 12 10 38 38 H 0.97004 * 119.99990 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0379 0.9688 -1.2916 6 6 4.9565 2.0788 -1.8442 7 6 5.3449 2.8768 -0.5718 8 6 4.0387 2.7988 0.2574 9 1 3.3288 3.5537 -0.0809 10 6 4.3366 2.9767 1.7237 11 8 4.4801 2.0054 2.4358 12 7 4.4437 4.2153 2.2442 13 6 4.1581 5.3867 1.4120 14 6 4.8199 4.3791 3.5524 15 1 4.7089 3.5641 4.2522 16 6 5.3441 5.5936 3.9777 17 7 5.7756 6.4677 3.0964 18 14 5.4355 5.9838 5.8022 19 1 6.7810 5.6258 6.3182 20 1 5.1951 7.4344 6.0108 21 1 4.4027 5.2016 6.5279 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.6102 0.0528 -1.1446 30 1 3.2163 0.7881 -1.9848 31 1 5.8409 1.6486 -2.3143 32 1 4.4154 2.7128 -2.5465 33 1 6.1702 2.3963 -0.0462 34 1 5.5898 3.9099 -0.8184 35 1 3.4645 5.1083 0.6186 36 1 3.7122 6.1690 2.0265 37 1 5.0850 5.7545 0.9719 38 1 6.1412 7.3157 3.3934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337540400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:01 Heat of formation + Delta-G solvation = -45.995669 kcal Electronic energy + Delta-G solvation = -18139.818976 eV Core-core repulsion = 15402.603196 eV Total energy + Delta-G solvation = -2737.215780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01811 -39.02693 -36.53521 -35.39121 -33.62392 -31.62923 -30.47238 -28.09734 -26.56102 -26.21068 -23.32147 -22.81103 -21.19539 -20.13333 -18.87429 -18.26635 -16.97990 -16.83240 -16.17122 -15.96716 -15.63946 -15.33308 -14.83332 -14.18237 -14.02923 -13.86488 -13.61660 -13.58093 -13.22064 -13.10688 -12.78471 -12.62464 -12.51646 -12.33628 -12.17225 -12.11318 -12.06157 -11.71405 -11.61861 -11.50892 -11.02279 -10.25732 -9.65293 -9.11069 -8.31826 -5.94134 1.35918 1.39787 1.53231 2.05402 2.26794 2.76253 3.08256 3.36099 3.67345 3.80869 3.94741 4.06319 4.13979 4.21465 4.28118 4.49866 4.56412 4.58516 4.66486 4.74560 4.78769 4.90544 4.94570 4.95851 5.01415 5.12309 5.17536 5.30163 5.34943 5.36048 5.41461 5.46448 5.92944 6.17227 6.26676 6.55176 7.22099 7.51480 8.11932 8.69943 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.006691 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.229422 B = 4183.681389 C = 4708.348614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.056 3.944 4 N -0.537 5.537 5 C 0.044 3.956 6 C -0.125 4.125 7 C -0.112 4.112 8 C 0.071 3.929 9 H 0.079 0.921 10 C 0.450 3.550 11 O -0.618 6.618 12 N -0.468 5.468 13 C 0.124 3.876 14 C -0.346 4.346 15 H 0.066 0.934 16 C -0.001 4.001 17 N -0.894 5.894 18 Si 0.985 3.015 19 H -0.275 1.275 20 H -0.264 1.264 21 H -0.275 1.275 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -4.328 -12.430 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.072 4.072 4 N -0.262 5.262 5 C -0.083 4.083 6 C -0.163 4.163 7 C -0.151 4.151 8 C -0.040 4.040 9 H 0.097 0.903 10 C 0.239 3.761 11 O -0.504 6.504 12 N -0.188 5.188 13 C -0.019 4.019 14 C -0.474 4.474 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.533 5.533 18 Si 0.809 3.191 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.199 1.199 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.339 -4.921 -11.687 14.176 hybrid contribution 0.075 0.923 0.793 1.219 sum -6.263 -3.998 -10.894 13.186 Atomic orbital electron populations 1.21703 0.94084 1.02491 1.01968 1.21450 0.96471 0.94998 1.02064 1.22306 0.86570 0.98415 0.99928 1.62975 1.08369 1.22057 1.32833 1.22916 0.98628 0.98475 0.88284 1.22779 1.00702 0.96918 0.95945 1.22554 0.94847 1.01793 0.95914 1.22346 0.98367 0.91470 0.91848 0.90313 1.20844 0.82319 0.82641 0.90329 1.90448 1.56593 1.40475 1.62876 1.43851 1.59016 1.05199 1.10770 1.21441 0.99582 0.87607 0.93269 1.19544 1.42072 0.99824 0.85971 0.91585 1.25999 0.94580 0.95699 1.03949 1.70076 1.38655 1.09307 1.35273 0.85053 0.78480 0.77956 0.77610 1.20122 1.18874 1.19946 0.91322 0.93628 0.91451 0.90644 0.93680 0.94040 0.92808 0.91138 0.90161 0.88754 0.89057 0.93246 0.89485 0.91888 0.93313 0.93057 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.91 71.98 0.71 -2.21 16 2 C -0.11 -2.87 5.96 30.59 0.18 -2.69 16 3 C 0.06 1.69 4.54 86.30 0.39 2.08 16 4 N -0.54 -18.99 4.41 -864.98 -3.82 -22.81 16 5 C 0.04 1.14 6.21 86.64 0.54 1.68 16 6 C -0.13 -2.91 6.94 31.77 0.22 -2.69 16 7 C -0.11 -3.73 6.48 31.98 0.21 -3.52 16 8 C 0.07 2.76 2.07 44.64 0.09 2.85 16 9 H 0.08 2.75 5.80 -2.38 -0.01 2.73 16 10 C 0.45 23.59 6.89 87.65 0.60 24.20 16 11 O -0.62 -38.11 16.27 -3.06 -0.05 -38.16 16 12 N -0.47 -25.38 3.02 -658.90 -1.99 -27.37 16 13 C 0.12 5.63 8.53 127.77 1.09 6.72 16 14 C -0.35 -20.63 9.32 84.04 0.78 -19.84 16 15 H 0.07 4.26 7.37 -2.91 -0.02 4.24 16 16 C 0.00 -0.03 5.03 84.92 0.43 0.40 16 17 N -0.89 -48.24 10.77 21.66 0.23 -48.01 16 18 Si 0.99 43.73 29.58 68.60 2.03 45.76 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.66 7.14 -2.39 -0.02 1.64 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 28 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 1.63 6.91 -2.39 -0.02 1.62 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.06 2.32 5.85 -2.39 -0.01 2.31 16 36 H 0.05 2.32 7.19 -2.38 -0.02 2.30 16 37 H 0.05 2.38 7.47 -2.38 -0.02 2.37 16 38 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -71.92 302.52 2.68 -69.24 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.02 Total: 14.36 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.25 Total: 6.98 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.57 Total: -98.18 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.05 Total: -38.16 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.92 2.68 -69.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337540400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.248 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds