Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 H 1.08998 * 109.46912 * 304.99938 * 3 2 1 5 5 C 1.52992 * 109.47423 * 184.99884 * 3 2 1 6 6 N 1.46902 * 109.47210 * 64.99755 * 3 2 1 7 7 C 1.46895 * 111.00180 * 205.00443 * 6 3 2 8 8 C 1.50697 * 109.47470 * 179.97438 * 7 6 3 9 9 O 1.21300 * 119.99809 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00105 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00020 * 140.26210 * 11 10 8 13 13 C 1.38945 * 119.99686 * 320.26127 * 11 10 8 14 14 N 1.31417 * 119.99805 * 161.33875 * 13 11 10 15 15 Si 1.86799 * 120.00221 * 341.33070 * 13 11 10 16 16 H 1.48497 * 109.46967 * 93.60871 * 15 13 11 17 17 H 1.48503 * 109.47278 * 213.60696 * 15 13 11 18 18 H 1.48495 * 109.47139 * 333.60867 * 15 13 11 19 19 C 1.46507 * 120.00172 * 0.02562 * 10 8 7 20 20 C 1.52994 * 117.50138 * 182.39344 * 19 10 8 21 21 C 1.52992 * 117.49821 * 113.73223 * 19 10 8 22 22 H 1.08998 * 109.47391 * 299.99789 * 1 2 3 23 23 H 1.09001 * 109.47069 * 60.00490 * 1 2 3 24 24 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47433 * 239.99269 * 2 1 3 26 26 H 1.09003 * 109.46908 * 120.00026 * 2 1 3 27 27 H 1.08994 * 109.47724 * 180.02562 * 5 3 2 28 28 H 1.09007 * 109.47355 * 299.99878 * 5 3 2 29 29 H 1.09001 * 109.47446 * 59.99589 * 5 3 2 30 30 H 1.00895 * 111.00233 * 81.04244 * 6 3 2 31 31 H 1.09001 * 109.46723 * 299.99965 * 7 6 3 32 32 H 1.09006 * 109.47495 * 59.99534 * 7 6 3 33 33 H 0.96996 * 120.00197 * 179.97438 * 14 13 11 34 34 H 1.08994 * 115.54614 * 328.06890 * 19 10 8 35 35 H 1.09001 * 117.49785 * 0.02562 * 20 19 10 36 36 H 1.09000 * 117.49835 * 145.01622 * 20 19 10 37 37 H 1.09006 * 117.50169 * 214.98378 * 21 19 10 38 38 H 1.09002 * 117.50043 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 1.5725 3.5562 1.0846 8 6 1.1716 4.1939 2.3898 9 8 0.9717 3.5027 3.3663 10 7 1.0362 5.5322 2.4723 11 6 0.6719 6.1125 3.6599 12 1 1.1313 7.0388 3.9716 13 6 -0.2883 5.5086 4.4624 14 7 -0.3819 5.8333 5.7324 15 14 -1.4462 4.2354 3.7361 16 1 -0.8840 2.8773 3.9475 17 1 -2.7697 4.3325 4.4027 18 1 -1.6055 4.4842 2.2808 19 6 1.2782 6.3672 1.2930 20 6 1.1628 7.8830 1.4649 21 6 0.0826 7.1148 0.6994 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5139 0.8900 27 1 3.9283 2.4719 -0.1252 28 1 3.9995 0.9053 0.7162 29 1 3.8533 0.9569 -1.0570 30 1 2.2852 1.8564 2.0018 31 1 2.5455 3.9390 0.7764 32 1 0.8307 3.7931 0.3218 33 1 -1.0524 5.4120 6.2925 34 1 2.0333 5.9951 0.6007 35 1 0.9073 8.2592 2.4555 36 1 1.8419 8.5084 0.8853 37 1 0.0513 7.2350 -0.3835 38 1 -0.8841 6.9851 1.1860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379978669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = 1.912365 kcal Electronic energy + Delta-G solvation = -18152.322127 eV Core-core repulsion = 15417.183795 eV Total energy + Delta-G solvation = -2735.138332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21064 -37.33309 -36.24334 -32.95601 -32.28724 -31.35160 -29.51488 -26.55943 -24.09655 -23.13361 -21.90916 -21.33224 -20.51369 -19.20259 -17.03362 -16.20874 -15.77436 -15.20434 -14.74033 -14.49609 -13.87017 -13.74362 -13.49026 -13.17515 -13.00992 -12.71095 -12.30892 -12.25715 -11.75301 -11.64276 -11.45208 -11.10826 -11.03805 -10.69554 -10.67139 -10.59608 -10.28865 -9.99815 -9.91813 -9.57451 -8.51345 -8.39161 -8.01522 -7.45280 -6.13000 -3.90706 3.34373 3.58778 3.80304 3.88071 4.12783 4.51747 4.65654 4.72142 4.85118 5.11875 5.20620 5.28724 5.41581 5.45591 5.53460 5.59200 5.59988 5.67540 5.72857 5.76286 5.84435 5.91275 6.05479 6.10221 6.15759 6.19597 6.26902 6.33277 6.61416 6.66423 6.84771 7.25769 7.70962 7.88812 8.00773 8.81278 8.95533 9.47587 9.85239 10.90397 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.008832 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.242525 B = 3169.658409 C = 3820.452727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.081 3.919 4 H 0.074 0.926 5 C -0.183 4.183 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.446 3.554 9 O -0.527 6.527 10 N -0.437 5.437 11 C -0.350 4.350 12 H 0.095 0.905 13 C 0.088 3.912 14 N -0.869 5.869 15 Si 0.923 3.077 16 H -0.245 1.245 17 H -0.318 1.318 18 H -0.285 1.285 19 C 0.064 3.936 20 C -0.173 4.173 21 C -0.199 4.199 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.350 0.650 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.272 0.728 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -5.166 -14.134 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.029 4.029 4 H 0.093 0.907 5 C -0.242 4.242 6 N -0.298 5.298 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.409 6.409 10 N -0.159 5.159 11 C -0.475 4.475 12 H 0.113 0.887 13 C -0.121 4.121 14 N -0.504 5.504 15 Si 0.756 3.244 16 H -0.171 1.171 17 H -0.249 1.249 18 H -0.211 1.211 19 C -0.042 4.042 20 C -0.210 4.210 21 C -0.238 4.238 22 H 0.090 0.910 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.621 -13.527 15.116 hybrid contribution 0.352 -0.117 -0.458 0.589 sum 4.080 -5.738 -13.985 15.657 Atomic orbital electron populations 1.21676 0.95451 1.00547 1.02690 1.21471 0.96704 0.95292 1.01148 1.21646 0.92750 0.95695 0.92848 0.90735 1.22529 0.97742 1.01834 1.02110 1.60202 1.56775 1.06678 1.06146 1.21782 1.00176 0.88698 0.97616 1.20161 0.83231 0.83068 0.89957 1.90526 1.51501 1.60988 1.37886 1.43156 1.60949 1.03650 1.08118 1.18759 1.23321 1.11140 0.94303 0.88705 1.25344 0.95967 0.96339 0.94450 1.69744 1.33243 1.42744 1.04702 0.86200 0.75952 0.84290 0.77979 1.17100 1.24852 1.21130 1.21797 0.99377 0.91357 0.91711 1.23129 1.01644 0.93382 1.02868 1.23280 0.95913 1.06256 0.98343 0.91019 0.93580 0.93761 0.92420 0.92003 0.92762 0.92376 0.92332 0.82969 0.93674 0.89664 0.91876 0.87381 0.87098 0.89491 0.89571 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.80 37.16 0.36 -1.53 16 2 C -0.11 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.08 1.03 2.59 -67.72 -0.18 0.86 16 4 H 0.07 0.93 7.80 -51.93 -0.40 0.52 16 5 C -0.18 -2.00 9.16 37.15 0.34 -1.65 16 6 N -0.67 -11.19 5.33 -108.00 -0.58 -11.77 16 7 C 0.05 0.89 4.60 -4.98 -0.02 0.87 16 8 C 0.45 10.61 5.92 -10.99 -0.07 10.55 16 9 O -0.53 -14.63 11.08 5.54 0.06 -14.57 16 10 N -0.44 -10.53 2.56 -107.74 -0.28 -10.80 16 11 C -0.35 -9.87 8.77 -14.93 -0.13 -10.00 16 12 H 0.10 2.79 6.95 -52.49 -0.36 2.42 16 13 C 0.09 2.63 4.89 -17.47 -0.09 2.54 16 14 N -0.87 -27.01 13.96 55.50 0.77 -26.24 16 15 Si 0.92 25.47 24.58 -169.99 -4.18 21.29 16 16 H -0.25 -7.11 6.09 56.52 0.34 -6.77 16 17 H -0.32 -8.68 7.11 56.52 0.40 -8.28 16 18 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 19 C 0.06 1.19 5.85 -67.93 -0.40 0.79 16 20 C -0.17 -2.97 9.80 -26.70 -0.26 -3.23 16 21 C -0.20 -3.41 10.37 -26.70 -0.28 -3.69 16 22 H 0.07 1.14 7.75 -51.93 -0.40 0.74 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.60 7.45 -51.93 -0.39 0.22 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.35 6.11 8.17 -39.29 -0.32 5.79 16 31 H 0.05 0.70 6.86 -51.93 -0.36 0.35 16 32 H 0.09 1.45 8.02 -51.93 -0.42 1.04 16 33 H 0.27 8.00 8.31 -40.82 -0.34 7.66 16 34 H 0.11 1.67 6.99 -51.93 -0.36 1.31 16 35 H 0.11 2.20 6.48 -51.93 -0.34 1.86 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -32.95 303.21 -6.83 -39.79 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.35 Total: 3.66 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.86 Total: -5.94 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.08 Total: -48.81 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.06 Total: -14.57 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.18 Total: 21.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.95 -6.83 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379978669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.701 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds