Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 H 1.08998 * 109.46912 * 304.99938 * 3 2 1 5 5 C 1.52992 * 109.47423 * 184.99884 * 3 2 1 6 6 N 1.46902 * 109.47210 * 64.99755 * 3 2 1 7 7 C 1.46895 * 111.00180 * 205.00443 * 6 3 2 8 8 C 1.50697 * 109.47470 * 179.97438 * 7 6 3 9 9 O 1.21300 * 119.99809 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00105 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00020 * 140.26210 * 11 10 8 13 13 C 1.38945 * 119.99686 * 320.26127 * 11 10 8 14 14 N 1.31417 * 119.99805 * 161.33875 * 13 11 10 15 15 Si 1.86799 * 120.00221 * 341.33070 * 13 11 10 16 16 H 1.48497 * 109.46967 * 93.60871 * 15 13 11 17 17 H 1.48503 * 109.47278 * 213.60696 * 15 13 11 18 18 H 1.48495 * 109.47139 * 333.60867 * 15 13 11 19 19 C 1.46507 * 120.00172 * 0.02562 * 10 8 7 20 20 C 1.52994 * 117.50138 * 182.39344 * 19 10 8 21 21 C 1.52992 * 117.49821 * 113.73223 * 19 10 8 22 22 H 1.08998 * 109.47391 * 299.99789 * 1 2 3 23 23 H 1.09001 * 109.47069 * 60.00490 * 1 2 3 24 24 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47433 * 239.99269 * 2 1 3 26 26 H 1.09003 * 109.46908 * 120.00026 * 2 1 3 27 27 H 1.08994 * 109.47724 * 180.02562 * 5 3 2 28 28 H 1.09007 * 109.47355 * 299.99878 * 5 3 2 29 29 H 1.09001 * 109.47446 * 59.99589 * 5 3 2 30 30 H 1.00895 * 111.00233 * 81.04244 * 6 3 2 31 31 H 1.09001 * 109.46723 * 299.99965 * 7 6 3 32 32 H 1.09006 * 109.47495 * 59.99534 * 7 6 3 33 33 H 0.96996 * 120.00197 * 179.97438 * 14 13 11 34 34 H 1.08994 * 115.54614 * 328.06890 * 19 10 8 35 35 H 1.09001 * 117.49785 * 0.02562 * 20 19 10 36 36 H 1.09000 * 117.49835 * 145.01622 * 20 19 10 37 37 H 1.09006 * 117.50169 * 214.98378 * 21 19 10 38 38 H 1.09002 * 117.50043 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 1.5725 3.5562 1.0846 8 6 1.1716 4.1939 2.3898 9 8 0.9717 3.5027 3.3663 10 7 1.0362 5.5322 2.4723 11 6 0.6719 6.1125 3.6599 12 1 1.1313 7.0388 3.9716 13 6 -0.2883 5.5086 4.4624 14 7 -0.3819 5.8333 5.7324 15 14 -1.4462 4.2354 3.7361 16 1 -0.8840 2.8773 3.9475 17 1 -2.7697 4.3325 4.4027 18 1 -1.6055 4.4842 2.2808 19 6 1.2782 6.3672 1.2930 20 6 1.1628 7.8830 1.4649 21 6 0.0826 7.1148 0.6994 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5139 0.8900 27 1 3.9283 2.4719 -0.1252 28 1 3.9995 0.9053 0.7162 29 1 3.8533 0.9569 -1.0570 30 1 2.2852 1.8564 2.0018 31 1 2.5455 3.9390 0.7764 32 1 0.8307 3.7931 0.3218 33 1 -1.0524 5.4120 6.2925 34 1 2.0333 5.9951 0.6007 35 1 0.9073 8.2592 2.4555 36 1 1.8419 8.5084 0.8853 37 1 0.0513 7.2350 -0.3835 38 1 -0.8841 6.9851 1.1860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379978669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = -21.605239 kcal Electronic energy + Delta-G solvation = -18153.341927 eV Core-core repulsion = 15417.183795 eV Total energy + Delta-G solvation = -2736.158132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97983 -38.55080 -37.80884 -34.93419 -33.66202 -33.21777 -30.56111 -28.20574 -25.75288 -24.25189 -23.32781 -22.89131 -21.53578 -21.07140 -18.90643 -17.87833 -17.43261 -16.56981 -16.35565 -15.95563 -15.46532 -15.21019 -14.85268 -14.62398 -14.39561 -14.23021 -14.00507 -13.51753 -13.45090 -12.88862 -12.86718 -12.53850 -12.35116 -12.17559 -12.03451 -11.97892 -11.67592 -11.58226 -11.53046 -11.20978 -10.70679 -10.34970 -9.40753 -9.23144 -8.41142 -6.14902 1.20959 1.35297 1.56494 1.94701 2.45791 2.55451 2.96076 3.23640 3.34365 3.87967 3.93188 4.06522 4.16771 4.22931 4.27913 4.33577 4.41677 4.53183 4.57929 4.73785 4.80679 4.88514 4.92183 4.98041 5.12441 5.18346 5.23093 5.30235 5.36154 5.45495 5.56017 5.69706 5.82410 6.13356 6.44505 6.78143 6.91712 7.36440 7.89676 8.65743 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.008832 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.242525 B = 3169.658409 C = 3820.452727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C 0.081 3.919 4 H 0.085 0.915 5 C -0.177 4.177 6 N -0.687 5.687 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.575 6.575 10 N -0.455 5.455 11 C -0.336 4.336 12 H 0.072 0.928 13 C 0.039 3.961 14 N -0.914 5.914 15 Si 0.977 3.023 16 H -0.272 1.272 17 H -0.320 1.320 18 H -0.274 1.274 19 C 0.044 3.956 20 C -0.169 4.169 21 C -0.186 4.186 22 H 0.034 0.966 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.343 0.657 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.271 0.729 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -5.529 -18.132 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.028 4.028 4 H 0.103 0.897 5 C -0.235 4.235 6 N -0.320 5.320 7 C -0.067 4.067 8 C 0.230 3.770 9 O -0.459 6.459 10 N -0.176 5.176 11 C -0.463 4.463 12 H 0.090 0.910 13 C -0.164 4.164 14 N -0.553 5.553 15 Si 0.810 3.190 16 H -0.199 1.199 17 H -0.251 1.251 18 H -0.199 1.199 19 C -0.061 4.061 20 C -0.206 4.206 21 C -0.224 4.224 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.900 -5.958 -17.581 19.199 hybrid contribution 0.087 0.007 0.726 0.731 sum 4.987 -5.952 -16.855 18.558 Atomic orbital electron populations 1.21650 0.96435 1.00923 1.01242 1.21492 0.95767 0.95096 1.02062 1.21757 0.94255 0.95698 0.91090 0.89661 1.22449 0.95938 1.02094 1.03058 1.60209 1.57590 1.06229 1.07927 1.21668 1.02021 0.89137 0.93842 1.21329 0.81252 0.82762 0.91668 1.90487 1.53137 1.62126 1.40188 1.43370 1.60977 1.04635 1.08663 1.18681 1.21722 1.09812 0.96127 0.91012 1.25946 0.97699 0.98010 0.94786 1.69825 1.34792 1.44865 1.05783 0.85321 0.74421 0.81346 0.77928 1.19913 1.25060 1.19873 1.22245 1.01689 0.91482 0.90640 1.23163 1.02624 0.93008 1.01847 1.23325 0.93713 1.04700 1.00661 0.94649 0.92689 0.92606 0.89606 0.92901 0.92718 0.92903 0.90124 0.83844 0.90384 0.87951 0.92029 0.82984 0.90814 0.85175 0.84874 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.80 71.98 0.71 -2.78 16 2 C -0.11 -2.23 5.61 30.59 0.17 -2.06 16 3 C 0.08 1.80 2.59 44.91 0.12 1.92 16 4 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 5 C -0.18 -3.17 9.16 71.98 0.66 -2.51 16 6 N -0.69 -21.78 5.33 -495.60 -2.64 -24.42 16 7 C 0.07 2.14 4.60 85.56 0.39 2.53 16 8 C 0.44 20.43 5.92 87.66 0.52 20.95 16 9 O -0.57 -32.36 11.08 -3.09 -0.03 -32.39 16 10 N -0.45 -21.50 2.56 -613.15 -1.57 -23.07 16 11 C -0.34 -19.42 8.77 84.04 0.74 -18.69 16 12 H 0.07 4.39 6.95 -2.91 -0.02 4.37 16 13 C 0.04 2.41 4.89 84.92 0.41 2.83 16 14 N -0.91 -59.29 13.96 21.66 0.30 -58.99 16 15 Si 0.98 54.58 24.58 68.60 1.69 56.26 16 16 H -0.27 -16.22 6.09 99.48 0.61 -15.61 16 17 H -0.32 -17.56 7.11 99.48 0.71 -16.85 16 18 H -0.27 -14.40 7.11 99.48 0.71 -13.70 16 19 C 0.04 1.49 5.85 44.99 0.26 1.75 16 20 C -0.17 -5.37 9.80 30.62 0.30 -5.07 16 21 C -0.19 -5.72 10.37 30.61 0.32 -5.40 16 22 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.16 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 28 H 0.05 1.01 8.13 -2.38 -0.02 0.99 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.34 11.66 8.17 -89.70 -0.73 10.92 16 31 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 32 H 0.10 3.04 8.02 -2.38 -0.02 3.02 16 33 H 0.27 16.70 8.31 -92.71 -0.77 15.93 16 34 H 0.15 3.84 6.99 -2.39 -0.02 3.82 16 35 H 0.07 2.92 6.48 -2.39 -0.02 2.91 16 36 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -75.90 303.21 2.54 -73.35 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.20 Total: 15.79 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.60 Total: -6.54 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.90 Total: -106.48 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.03 Total: -32.39 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.69 Total: 56.26 kcal Total: -75.90 2.54 -73.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379978669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.749 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds