Wall clock time and date at job start Mon Mar 30 2020 04:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43445 * 2 1 4 4 C 1.55235 * 110.46698 * 237.35647 * 2 1 3 5 5 C 1.54900 * 102.58785 * 203.39037 * 4 2 1 6 6 C 1.54272 * 104.30887 * 37.93170 * 5 4 2 7 7 C 1.53876 * 106.59848 * 336.32407 * 6 5 4 8 8 N 1.46901 * 110.02985 * 240.71612 * 7 6 5 9 9 C 1.46899 * 110.99963 * 299.51124 * 8 7 6 10 10 C 1.53002 * 109.47079 * 185.49619 * 9 8 7 11 11 C 1.50696 * 109.47231 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99830 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00168 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00252 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46904 * 60.00348 * 15 13 11 17 17 H 1.48503 * 109.47419 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47196 * 300.00343 * 15 13 11 19 19 C 1.50692 * 110.03043 * 119.33565 * 7 6 5 20 20 N 1.34781 * 119.99854 * 153.50336 * 19 7 6 21 21 O 1.21276 * 120.00403 * 333.49708 * 19 7 6 22 22 H 1.09002 * 109.47421 * 298.72399 * 1 2 3 23 23 H 1.09000 * 109.47643 * 58.72734 * 1 2 3 24 24 H 1.08998 * 109.47231 * 178.72711 * 1 2 3 25 25 H 1.09001 * 110.90053 * 85.10022 * 4 2 1 26 26 H 1.09000 * 110.76802 * 321.61861 * 4 2 1 27 27 H 1.08997 * 110.48703 * 279.18696 * 5 4 2 28 28 H 1.08999 * 110.48398 * 156.67642 * 5 4 2 29 29 H 1.08994 * 110.03010 * 95.60926 * 6 5 4 30 30 H 1.09002 * 110.02823 * 216.99090 * 6 5 4 31 31 H 1.00897 * 110.99974 * 63.46531 * 8 7 6 32 32 H 1.09005 * 109.46985 * 305.49037 * 9 8 7 33 33 H 1.08998 * 109.47609 * 65.48947 * 9 8 7 34 34 H 1.09005 * 109.46737 * 299.99570 * 10 9 8 35 35 H 1.08998 * 109.47449 * 59.99230 * 10 9 8 36 36 H 0.97000 * 120.00643 * 179.97438 * 14 13 11 37 37 H 0.96997 * 120.00301 * 354.74485 * 20 19 7 38 38 H 0.97000 * 119.99733 * 174.75452 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0728 -0.7845 -1.2246 5 6 3.4908 -1.1988 -0.7587 6 6 3.3166 -1.5396 0.7358 7 6 2.0699 -0.7774 1.2181 8 7 2.4355 0.1579 2.2903 9 6 3.0047 -0.5565 3.4407 10 6 3.2452 0.4298 4.5854 11 6 3.8285 -0.3031 5.7659 12 1 4.0091 -1.3663 5.7058 13 6 4.1315 0.3834 6.9225 14 7 3.9119 1.6780 6.9955 15 14 4.8538 -0.5253 8.3860 16 1 6.1415 -1.1520 7.9931 17 1 5.0874 0.4320 9.4970 18 1 3.9064 -1.5784 8.8316 19 6 1.0304 -1.7493 1.7137 20 7 0.1297 -1.3597 2.6376 21 8 1.0040 -2.8820 1.2811 22 1 -0.3634 0.4939 0.9012 23 1 -0.3634 0.5335 -0.8783 24 1 -0.3633 -1.0274 -0.0228 25 1 2.1273 -0.1431 -2.1043 26 1 1.4594 -1.6634 -1.4234 27 1 4.1898 -0.3717 -0.8824 28 1 3.8339 -2.0730 -1.3119 29 1 3.1693 -2.6125 0.8593 30 1 4.1933 -1.2162 1.2971 31 1 3.0718 0.8643 1.9524 32 1 2.3100 -1.3302 3.7678 33 1 3.9501 -1.0156 3.1519 34 1 3.9398 1.2036 4.2583 35 1 2.2997 0.8889 4.8742 36 1 4.1247 2.1610 7.8093 37 1 0.1969 -0.4794 3.0395 38 1 -0.5856 -1.9596 2.9008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380080541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:43 Heat of formation + Delta-G solvation = -82.853532 kcal Electronic energy + Delta-G solvation = -18151.250057 eV Core-core repulsion = 15412.436000 eV Total energy + Delta-G solvation = -2738.814057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76407 -38.48715 -36.53606 -34.90522 -34.29273 -32.10875 -31.35905 -28.23488 -26.46193 -25.35163 -23.44737 -22.66530 -21.08533 -20.16027 -18.62501 -18.02208 -17.51850 -17.01479 -16.46184 -16.21415 -15.71638 -15.34535 -15.07764 -14.62645 -14.32491 -14.24208 -13.68104 -13.39523 -13.16576 -12.98800 -12.84301 -12.59508 -12.24868 -12.16138 -11.92352 -11.80509 -11.61507 -11.46749 -11.36959 -11.15825 -10.89254 -10.56811 -10.47895 -9.41921 -8.19878 -6.30048 1.40370 1.41867 1.50011 1.63534 2.40013 2.67327 3.09035 3.13977 3.52910 3.67147 3.92538 4.23806 4.27725 4.39287 4.44097 4.53249 4.58219 4.61702 4.73340 4.86023 4.94892 5.00377 5.07763 5.16404 5.19070 5.21868 5.31033 5.45746 5.48899 5.69613 5.74852 5.91629 6.06509 6.22236 6.44406 6.53446 6.86231 7.37881 7.38888 8.91248 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034733 B = 0.005705 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.965349 B = 4906.585839 C = 4998.451662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 H 0.104 0.896 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.152 4.152 7 C 0.093 3.907 8 N -0.667 5.667 9 C 0.077 3.923 10 C 0.039 3.961 11 C -0.546 4.546 12 H 0.051 0.949 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.270 1.270 19 C 0.542 3.458 20 N -0.833 5.833 21 O -0.592 6.592 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.354 0.646 32 H 0.053 0.947 33 H 0.017 0.983 34 H -0.004 1.004 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.416 0.584 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -1.595 -14.823 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 H 0.122 0.878 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.192 4.192 7 C -0.001 4.001 8 N -0.299 5.299 9 C -0.052 4.052 10 C 0.002 3.998 11 C -0.585 4.585 12 H 0.069 0.931 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.783 3.217 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.195 1.195 19 C 0.327 3.673 20 N -0.395 5.395 21 O -0.473 6.473 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.248 0.752 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.848 -2.071 -14.793 16.042 hybrid contribution 1.037 -0.552 1.226 1.698 sum -4.811 -2.623 -13.567 14.632 Atomic orbital electron populations 1.21885 0.94084 1.01106 1.03214 1.22056 0.96454 0.99602 0.91018 0.87754 1.22647 0.95443 0.99717 0.97471 1.22276 0.97867 1.01803 0.93230 1.22850 0.96938 1.00801 0.98621 1.21942 0.93535 0.91810 0.92849 1.60662 1.48793 1.14128 1.06355 1.21898 0.96157 0.96511 0.90667 1.18838 0.95457 0.93848 0.91661 1.21546 1.42386 0.94988 0.99566 0.93064 1.25817 0.96032 0.95633 1.01552 1.70062 1.49131 1.08589 1.28757 0.85617 0.79089 0.78407 0.78624 1.19539 1.20590 1.19516 1.20358 0.82040 0.87030 0.77832 1.43870 1.30888 1.22222 1.42550 1.90660 1.74816 1.21525 1.60287 0.91824 0.90276 0.94293 0.88590 0.92368 0.90041 0.91144 0.92473 0.91772 0.82557 0.92887 0.96470 0.98530 0.97636 0.92708 0.75167 0.76736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.11 71.98 0.58 -2.42 16 2 C -0.07 -1.58 3.06 -9.60 -0.03 -1.61 16 3 H 0.10 2.01 7.88 -2.39 -0.02 1.99 16 4 C -0.12 -2.30 6.36 32.01 0.20 -2.09 16 5 C -0.11 -2.48 6.82 31.67 0.22 -2.26 16 6 C -0.15 -4.41 5.53 31.32 0.17 -4.24 16 7 C 0.09 2.64 0.74 3.50 0.00 2.64 16 8 N -0.67 -20.77 5.22 -470.30 -2.45 -23.22 16 9 C 0.08 3.07 4.82 86.30 0.42 3.49 16 10 C 0.04 1.98 5.28 29.85 0.16 2.14 16 11 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 12 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.47 5.46 84.65 0.46 0.93 16 14 N -0.93 -54.78 13.29 21.44 0.28 -54.49 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.54 17.39 3.65 87.65 0.32 17.71 16 20 N -0.83 -22.74 7.32 -173.54 -1.27 -24.01 16 21 O -0.59 -22.75 16.44 -3.02 -0.05 -22.80 16 22 H 0.06 1.32 7.72 -2.39 -0.02 1.30 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 24 H 0.04 0.93 6.93 -2.39 -0.02 0.91 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.33 8.06 -2.39 -0.02 1.31 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.93 6.74 -2.39 -0.02 1.92 16 30 H 0.06 1.94 6.41 -2.39 -0.02 1.93 16 31 H 0.35 10.34 8.61 -89.70 -0.77 9.57 16 32 H 0.05 2.21 6.46 -2.38 -0.02 2.19 16 33 H 0.02 0.71 6.53 -2.39 -0.02 0.69 16 34 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.42 11.18 7.95 -92.71 -0.74 10.45 16 38 H 0.40 9.57 8.93 -92.71 -0.83 8.75 16 Total: -1.00 -65.68 299.17 0.01 -65.66 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -1.26 Total: 29.03 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 2.74 Total: -16.06 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.44 Total: -101.73 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.68 0.01 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380080541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.189 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds