Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 18 18 C 1.53000 * 109.47136 * 59.99978 * 16 14 13 19 19 N 1.46894 * 109.47449 * 179.97438 * 16 14 13 20 20 C 1.46905 * 111.00342 * 154.99754 * 19 16 14 21 21 C 1.52989 * 117.50298 * 223.75052 * 20 19 16 22 22 C 1.52997 * 117.49724 * 155.08696 * 20 19 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 1.08993 * 109.47494 * 180.02562 * 18 16 14 31 31 H 1.09006 * 109.47354 * 300.00465 * 18 16 14 32 32 H 1.09002 * 109.46985 * 60.00068 * 18 16 14 33 33 H 1.00902 * 111.00248 * 278.95620 * 19 16 14 34 34 H 1.08998 * 115.54557 * 9.42376 * 20 19 16 35 35 H 1.09008 * 117.50216 * 359.97438 * 21 20 19 36 36 H 1.09005 * 117.50322 * 145.01997 * 21 20 19 37 37 H 1.09004 * 117.49851 * 214.98025 * 22 20 19 38 38 H 1.08999 * 117.50574 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 1 0.0680 2.6148 3.4685 18 6 1.0070 4.4834 2.9522 19 7 -1.3256 3.8732 2.5259 20 6 -1.9701 3.9935 3.8405 21 6 -3.4232 3.5299 3.9600 22 6 -3.0916 5.0240 3.9858 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 0.7191 4.9709 3.8835 31 1 2.0181 4.0872 3.0473 32 1 0.9757 5.2075 2.1380 33 1 -1.3225 4.7588 2.0423 34 1 -1.3187 3.8340 4.6997 35 1 -3.9013 3.1360 3.0630 36 1 -3.7280 3.0657 4.8980 37 1 -3.1783 5.5423 4.9409 38 1 -3.3515 5.6126 3.1060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382914821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -17.981153 kcal Electronic energy + Delta-G solvation = -17699.401711 eV Core-core repulsion = 14963.400732 eV Total energy + Delta-G solvation = -2736.000979 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.27005 -37.62085 -35.06675 -34.05600 -32.27472 -30.82702 -28.67012 -26.87276 -24.05001 -22.73105 -22.40626 -21.15940 -20.03589 -19.15334 -17.19632 -16.32366 -15.72364 -15.36821 -14.83178 -14.39494 -14.16154 -13.73614 -13.33371 -13.16958 -12.63398 -12.37186 -12.01434 -11.90438 -11.55052 -11.44478 -11.21548 -11.14880 -10.92924 -10.83868 -10.77768 -10.41324 -10.26671 -10.10112 -9.55737 -8.99173 -8.83409 -8.46413 -8.12207 -7.70683 -6.09402 -4.18584 3.24602 3.32465 3.34786 3.54227 3.76041 3.78321 4.31736 4.51960 4.86148 4.92370 5.08230 5.17241 5.21819 5.27727 5.39581 5.54808 5.56955 5.79647 5.83796 5.92334 6.12341 6.15803 6.46809 6.54731 6.74636 7.04293 7.12556 7.28635 7.40064 7.45069 7.55769 7.67271 7.81153 7.96402 8.23627 8.76724 8.84750 9.27386 9.49883 10.95879 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041484 B = 0.005391 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.800357 B = 5192.232284 C = 5645.253832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.506 3.494 15 O -0.529 6.529 16 C 0.067 3.933 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.634 5.634 20 C 0.020 3.980 21 C -0.171 4.171 22 C -0.196 4.196 23 H 0.020 0.980 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.029 0.971 27 H 0.097 0.903 28 H 0.263 0.737 29 H 0.385 0.615 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.348 0.652 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 6.575 12.378 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.361 5.361 14 C 0.289 3.711 15 O -0.406 6.406 16 C -0.047 4.047 17 H 0.115 0.885 18 C -0.236 4.236 19 N -0.264 5.264 20 C -0.091 4.091 21 C -0.209 4.209 22 C -0.234 4.234 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.217 0.783 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.169 0.831 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.277 5.833 11.328 14.674 hybrid contribution 1.772 0.683 0.640 2.004 sum -5.506 6.517 11.969 14.698 Atomic orbital electron populations 1.21833 0.98228 0.97919 1.01411 1.21931 0.92699 0.99890 1.02096 1.18737 0.94003 0.89132 0.81143 0.93449 1.21284 0.90843 1.38782 1.06176 0.92144 1.24889 0.98490 0.94888 0.95444 1.69914 1.34953 1.37746 1.09320 0.86425 0.85042 0.77744 0.78059 1.19802 1.20912 1.20925 1.46477 1.14655 1.56604 1.18393 1.20141 0.82581 0.79597 0.88792 1.90663 1.51007 1.58921 1.39997 1.21601 0.88176 0.97126 0.97764 0.88517 1.22455 1.00490 0.98842 1.01823 1.59805 1.17496 1.32867 1.16253 1.22377 0.90761 1.03916 0.92027 1.23151 0.98670 0.95999 1.03092 1.23250 1.04342 0.92831 1.02962 0.96040 0.93228 0.94029 0.95178 0.88443 0.92672 0.78299 0.92270 0.91078 0.91811 0.83089 0.88398 0.88145 0.89082 0.88981 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.62 4.91 -54.94 -0.27 -14.89 16 14 C 0.51 9.96 5.79 -10.99 -0.06 9.90 16 15 O -0.53 -12.55 13.57 5.56 0.08 -12.48 16 16 C 0.07 0.97 2.90 -68.87 -0.20 0.77 16 17 H 0.10 1.29 7.74 -51.93 -0.40 0.88 16 18 C -0.18 -2.10 9.06 37.16 0.34 -1.77 16 19 N -0.63 -8.97 5.98 -100.97 -0.60 -9.58 16 20 C 0.02 0.22 5.96 -67.72 -0.40 -0.18 16 21 C -0.17 -1.84 10.46 -26.70 -0.28 -2.12 16 22 C -0.20 -1.87 10.34 -26.70 -0.28 -2.14 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 25 H 0.04 0.94 5.64 -51.93 -0.29 0.65 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 6.87 7.96 -40.82 -0.32 6.55 16 30 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 0.82 7.57 -51.93 -0.39 0.43 16 32 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 33 H 0.35 4.77 8.42 -39.29 -0.33 4.44 16 34 H 0.10 0.99 7.77 -51.93 -0.40 0.58 16 35 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -30.05 308.92 -7.98 -38.03 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.18 Total: 10.53 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.26 Total: -7.63 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.25 Total: -48.68 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.05 -7.98 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382914821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.048 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds