Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 18 18 C 1.53000 * 109.47136 * 59.99978 * 16 14 13 19 19 N 1.46894 * 109.47449 * 179.97438 * 16 14 13 20 20 C 1.46905 * 111.00342 * 154.99754 * 19 16 14 21 21 C 1.52989 * 117.50298 * 223.75052 * 20 19 16 22 22 C 1.52997 * 117.49724 * 155.08696 * 20 19 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 1.08993 * 109.47494 * 180.02562 * 18 16 14 31 31 H 1.09006 * 109.47354 * 300.00465 * 18 16 14 32 32 H 1.09002 * 109.46985 * 60.00068 * 18 16 14 33 33 H 1.00902 * 111.00248 * 278.95620 * 19 16 14 34 34 H 1.08998 * 115.54557 * 9.42376 * 20 19 16 35 35 H 1.09008 * 117.50216 * 359.97438 * 21 20 19 36 36 H 1.09005 * 117.50322 * 145.01997 * 21 20 19 37 37 H 1.09004 * 117.49851 * 214.98025 * 22 20 19 38 38 H 1.08999 * 117.50574 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 1 0.0680 2.6148 3.4685 18 6 1.0070 4.4834 2.9522 19 7 -1.3256 3.8732 2.5259 20 6 -1.9701 3.9935 3.8405 21 6 -3.4232 3.5299 3.9600 22 6 -3.0916 5.0240 3.9858 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 0.7191 4.9709 3.8835 31 1 2.0181 4.0872 3.0473 32 1 0.9757 5.2075 2.1380 33 1 -1.3225 4.7588 2.0423 34 1 -1.3187 3.8340 4.6997 35 1 -3.9013 3.1360 3.0630 36 1 -3.7280 3.0657 4.8980 37 1 -3.1783 5.5423 4.9409 38 1 -3.3515 5.6126 3.1060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382914821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -39.046958 kcal Electronic energy + Delta-G solvation = -17700.315193 eV Core-core repulsion = 14963.400732 eV Total energy + Delta-G solvation = -2736.914461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79577 -38.68397 -36.85843 -35.26705 -34.19342 -32.67241 -29.85231 -28.72905 -25.56556 -24.47798 -23.19528 -22.12760 -21.75891 -20.89177 -18.89498 -17.49250 -17.36421 -16.93108 -16.42608 -15.92443 -15.64377 -14.86486 -14.64692 -14.51730 -14.41114 -13.76897 -13.54013 -13.19977 -13.11151 -12.94912 -12.84309 -12.69390 -12.38547 -12.29386 -12.11865 -12.02867 -11.71444 -11.56368 -11.21945 -11.00941 -10.56177 -10.36280 -9.53298 -9.16221 -8.13979 -6.31319 1.44840 1.45946 1.57658 1.99475 2.35166 2.56046 2.95596 3.15155 3.28339 3.96454 4.04365 4.08232 4.16536 4.22834 4.37868 4.50674 4.59204 4.64133 4.76404 4.82773 4.84171 4.89284 5.09386 5.11291 5.18840 5.28319 5.34897 5.46961 5.58849 5.68801 5.82571 5.95266 6.12437 6.20503 6.37390 6.78323 7.12477 7.36899 7.72773 8.91556 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041484 B = 0.005391 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.800357 B = 5192.232284 C = 5645.253832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.575 6.575 16 C 0.081 3.919 17 H 0.117 0.883 18 C -0.168 4.168 19 N -0.657 5.657 20 C 0.010 3.990 21 C -0.181 4.181 22 C -0.178 4.178 23 H 0.043 0.957 24 H 0.022 0.978 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.264 0.736 29 H 0.401 0.599 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.347 0.653 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 7.271 15.033 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.455 6.455 16 C -0.032 4.032 17 H 0.135 0.865 18 C -0.227 4.227 19 N -0.288 5.288 20 C -0.100 4.100 21 C -0.220 4.220 22 C -0.216 4.216 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.236 0.764 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.498 6.546 14.036 16.795 hybrid contribution 1.442 0.482 -0.208 1.535 sum -5.055 7.028 13.827 16.314 Atomic orbital electron populations 1.21654 0.97095 0.98887 1.00191 1.21785 0.93587 0.99439 1.01153 1.18300 0.93519 0.88984 0.81605 0.98791 1.21627 0.91463 1.38645 1.06597 0.90961 1.25783 1.03269 0.94447 0.95071 1.70070 1.36981 1.38556 1.09894 0.85327 0.79202 0.77771 0.78196 1.18313 1.20555 1.21129 1.46240 1.15666 1.56528 1.17344 1.21188 0.81427 0.78615 0.90281 1.90644 1.52184 1.60404 1.42248 1.21455 0.89170 0.98063 0.94527 0.86550 1.22398 0.99947 0.97547 1.02842 1.59697 1.17497 1.33137 1.18450 1.22501 0.91031 1.05367 0.91071 1.23191 0.98413 0.97362 1.02991 1.23297 1.02228 0.92088 1.03945 0.93830 0.95868 0.93744 0.94072 0.91189 0.92703 0.76428 0.89167 0.90606 0.92997 0.83248 0.86398 0.90431 0.87283 0.86565 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.08 5.45 30.60 0.17 -5.91 16 3 C 0.28 14.47 2.24 44.25 0.10 14.57 16 4 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.94 11.29 21.45 0.24 -52.70 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.71 -28.95 4.91 -446.11 -2.19 -31.14 16 14 C 0.50 19.66 5.79 87.66 0.51 20.17 16 15 O -0.58 -28.16 13.57 -3.04 -0.04 -28.20 16 16 C 0.08 2.21 2.90 44.17 0.13 2.33 16 17 H 0.12 2.74 7.74 -2.39 -0.02 2.72 16 18 C -0.17 -3.56 9.06 71.98 0.65 -2.91 16 19 N -0.66 -17.79 5.98 -473.35 -2.83 -20.62 16 20 C 0.01 0.20 5.96 44.91 0.27 0.47 16 21 C -0.18 -3.58 10.46 30.61 0.32 -3.26 16 22 C -0.18 -2.93 10.34 30.62 0.32 -2.61 16 23 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 25 H 0.04 2.03 5.64 -2.38 -0.01 2.02 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.40 13.75 7.96 -92.71 -0.74 13.01 16 30 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.07 1.54 7.57 -2.38 -0.02 1.52 16 32 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.35 9.28 8.42 -89.69 -0.76 8.52 16 34 H 0.12 1.90 7.77 -2.39 -0.02 1.88 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.06 308.92 0.51 -66.55 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.44 Total: 31.63 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.74 Total: -9.61 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.78 Total: -104.47 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.04 Total: -28.20 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -67.06 0.51 -66.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382914821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.507 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds