Wall clock time and date at job start Mon Mar 30 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46495 * 109.47316 * 120.00201 * 2 1 3 5 5 C 1.37100 * 120.00275 * 124.06199 * 4 2 1 6 6 H 1.07995 * 119.99963 * 154.99932 * 5 4 2 7 7 C 1.38953 * 119.99717 * 334.99827 * 5 4 2 8 8 N 1.31411 * 120.00006 * 145.68328 * 7 5 4 9 9 Si 1.86797 * 119.99961 * 325.67998 * 7 5 4 10 10 H 1.48497 * 109.47411 * 93.74243 * 9 7 5 11 11 H 1.48506 * 109.47083 * 213.73891 * 9 7 5 12 12 H 1.48505 * 109.47358 * 333.73898 * 9 7 5 13 13 C 1.34778 * 119.99700 * 304.06045 * 4 2 1 14 14 O 1.21292 * 120.00429 * 4.44438 * 13 4 2 15 15 C 1.50705 * 119.99752 * 184.43689 * 13 4 2 16 16 H 1.08996 * 110.27391 * 31.37962 * 15 13 4 17 17 C 1.54595 * 110.30780 * 153.57132 * 15 13 4 18 18 C 1.54928 * 102.92237 * 140.87618 * 17 15 13 19 19 N 1.48531 * 103.22986 * 322.58540 * 18 17 15 20 20 C 1.46900 * 111.00374 * 159.72021 * 19 18 17 21 21 C 1.47903 * 105.81812 * 39.20712 * 19 18 17 22 22 H 1.08997 * 109.47103 * 308.04420 * 1 2 3 23 23 H 1.09000 * 109.46707 * 68.04645 * 1 2 3 24 24 H 1.08996 * 109.46843 * 188.03970 * 1 2 3 25 25 H 1.08998 * 109.47357 * 240.00428 * 2 1 3 26 26 H 1.09000 * 109.46671 * 180.83765 * 3 2 1 27 27 H 1.08996 * 109.47367 * 300.83784 * 3 2 1 28 28 H 1.08994 * 109.46904 * 60.84283 * 3 2 1 29 29 H 0.96998 * 120.00245 * 179.97438 * 8 7 5 30 30 H 1.09007 * 110.72541 * 259.23932 * 17 15 13 31 31 H 1.09000 * 110.72433 * 22.51140 * 17 15 13 32 32 H 1.08997 * 110.66825 * 81.02123 * 18 17 15 33 33 H 1.09011 * 110.66821 * 203.98429 * 18 17 15 34 34 H 1.09001 * 109.47114 * 302.60486 * 20 19 18 35 35 H 1.09001 * 109.46579 * 62.60644 * 20 19 18 36 36 H 1.08998 * 109.46821 * 182.60556 * 20 19 18 37 37 H 1.09003 * 109.92037 * 215.31774 * 21 19 18 38 38 H 1.08996 * 109.91679 * 94.02375 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8739 -1.7548 1.0720 6 1 3.5404 -2.0091 1.8828 7 6 2.8832 -2.5060 -0.0969 8 7 4.0087 -3.0218 -0.5374 9 14 1.2959 -2.7827 -1.0420 10 1 1.1611 -1.7466 -2.0973 11 1 1.3218 -4.1282 -1.6699 12 1 0.1430 -2.6933 -0.1103 13 6 1.6267 -0.2798 2.4185 14 8 0.8080 0.6086 2.5264 15 6 2.2058 -0.9245 3.6515 16 1 3.2293 -1.2485 3.4630 17 6 2.1631 0.0604 4.8423 18 6 1.7812 -0.8531 6.0339 19 7 0.8139 -1.8075 5.4342 20 6 0.6997 -3.0238 6.2500 21 6 1.3384 -2.1201 4.0871 22 1 -0.3633 0.6333 0.8093 23 1 -0.3633 0.3842 -0.9532 24 1 -0.3633 -1.0175 0.1437 25 1 1.8934 -0.5137 -0.8900 26 1 3.1299 1.4425 -0.0150 27 1 1.6644 1.9607 -0.8823 28 1 1.6890 1.9519 0.8974 29 1 4.0152 -3.5466 -1.3532 30 1 3.1410 0.5146 5.0024 31 1 1.4030 0.8252 4.6833 32 1 2.6576 -1.3799 6.4113 33 1 1.3110 -0.2730 6.8282 34 1 1.6821 -3.4840 6.3556 35 1 0.3117 -2.7653 7.2352 36 1 0.0205 -3.7245 5.7643 37 1 0.5123 -2.2535 3.3886 38 1 1.9453 -3.0246 4.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386259265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:58 Heat of formation + Delta-G solvation = -13.948616 kcal Electronic energy + Delta-G solvation = -18679.456116 eV Core-core repulsion = 15943.630001 eV Total energy + Delta-G solvation = -2735.826116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60591 -37.80476 -35.14349 -32.80102 -31.83779 -30.81972 -28.44902 -26.52152 -25.51275 -24.76558 -22.28027 -20.80964 -20.23917 -18.70385 -17.06541 -16.15129 -15.50543 -15.04567 -14.83767 -14.05047 -13.85412 -13.76293 -13.43713 -13.05865 -12.72693 -12.40074 -12.29216 -11.83857 -11.58718 -11.48649 -11.29741 -11.19163 -11.11686 -10.93614 -10.80663 -10.64642 -10.36615 -10.09787 -9.85611 -9.69391 -9.07566 -8.26854 -8.11571 -7.89389 -6.57438 -3.92782 3.06361 3.23566 3.29899 3.74062 4.11853 4.34561 4.35407 4.87564 5.10595 5.21683 5.48295 5.61261 5.64431 5.67083 5.78139 5.86479 5.96018 5.98630 6.03115 6.06533 6.23436 6.26071 6.30249 6.33619 6.53913 6.57912 6.62704 6.65444 6.74599 6.97941 7.07732 7.20192 7.32463 7.33513 8.01368 8.25583 8.96307 9.43911 9.76045 10.52251 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.009568 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.796656 B = 2925.724559 C = 3402.171065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.156 4.156 4 N -0.452 5.452 5 C -0.354 4.354 6 H 0.107 0.893 7 C 0.071 3.929 8 N -0.842 5.842 9 Si 0.857 3.143 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.254 1.254 13 C 0.484 3.516 14 O -0.590 6.590 15 C -0.102 4.102 16 H 0.094 0.906 17 C -0.113 4.113 18 C 0.036 3.964 19 N -0.522 5.522 20 C 0.017 3.983 21 C 0.062 3.938 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.274 0.726 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 1.621 6.690 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.172 5.172 5 C -0.480 4.480 6 H 0.125 0.875 7 C -0.138 4.138 8 N -0.476 5.476 9 Si 0.684 3.316 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.179 1.179 13 C 0.273 3.727 14 O -0.475 6.475 15 C -0.124 4.124 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.091 4.091 19 N -0.246 5.246 20 C -0.132 4.132 21 C -0.066 4.066 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.656 2.138 6.537 7.790 hybrid contribution 0.257 -0.996 -0.715 1.252 sum -3.399 1.143 5.823 6.839 Atomic orbital electron populations 1.22506 0.96100 1.03168 1.02063 1.21101 0.93738 0.93336 0.89434 1.22048 1.00979 0.96463 1.01928 1.43882 1.41979 1.27978 1.03360 1.19052 1.16426 1.07980 1.04562 0.87529 1.25128 0.96427 0.96226 0.95998 1.69966 1.24971 1.31867 1.20792 0.87456 0.86321 0.77274 0.80552 1.20024 1.21813 1.17901 1.19884 0.83286 0.85194 0.84363 1.90455 1.35741 1.34748 1.86548 1.21911 1.00723 0.95704 0.94068 0.88783 1.22495 1.01967 0.98144 0.92489 1.23211 0.93765 0.94674 0.97482 1.64746 1.45328 1.11955 1.02605 1.22491 1.00126 0.92506 0.98057 1.22597 0.97842 0.96048 0.90097 0.89518 0.93448 0.92475 0.90016 0.92768 0.93111 0.91234 0.91542 0.91568 0.88949 0.94195 0.90456 0.95606 0.91721 0.91541 0.90211 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 7.99 37.16 0.30 -3.52 16 2 C 0.13 2.87 2.11 -67.93 -0.14 2.73 16 3 C -0.16 -3.12 9.19 37.16 0.34 -2.78 16 4 N -0.45 -10.79 2.31 -107.73 -0.25 -11.04 16 5 C -0.35 -9.02 9.32 -14.93 -0.14 -9.16 16 6 H 0.11 2.78 6.19 -52.49 -0.32 2.46 16 7 C 0.07 1.83 4.95 -17.47 -0.09 1.75 16 8 N -0.84 -22.74 13.96 55.50 0.77 -21.97 16 9 Si 0.86 20.08 23.90 -169.99 -4.06 16.02 16 10 H -0.27 -6.24 6.58 56.52 0.37 -5.86 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.99 5.64 56.52 0.32 -5.67 16 13 C 0.48 11.05 5.95 -10.98 -0.07 10.98 16 14 O -0.59 -14.21 12.01 5.55 0.07 -14.14 16 15 C -0.10 -2.01 2.66 -90.41 -0.24 -2.25 16 16 H 0.09 1.88 6.28 -51.93 -0.33 1.55 16 17 C -0.11 -1.91 6.55 -24.88 -0.16 -2.08 16 18 C 0.04 0.54 6.56 -1.90 -0.01 0.53 16 19 N -0.52 -8.65 5.55 -238.72 -1.33 -9.97 16 20 C 0.02 0.23 9.40 60.06 0.56 0.79 16 21 C 0.06 1.16 6.35 -2.75 -0.02 1.14 16 22 H 0.09 1.89 6.08 -51.93 -0.32 1.58 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.26 5.33 -51.93 -0.28 0.99 16 25 H 0.08 1.92 4.18 -51.93 -0.22 1.71 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.44 6.61 -51.93 -0.34 1.10 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 30 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.09 1.74 6.85 -51.93 -0.36 1.39 16 32 H 0.04 0.54 7.96 -51.93 -0.41 0.13 16 33 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.66 7.68 -51.93 -0.40 1.26 16 38 H 0.05 0.87 7.73 -51.93 -0.40 0.47 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -27.83 286.28 -6.14 -33.97 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.99 Total: 4.69 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.33 Total: -1.87 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.80 Total: -42.98 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.06 Total: 16.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.83 -6.14 -33.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386259265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.025 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds