Wall clock time and date at job start Mon Mar 30 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46495 * 109.47316 * 120.00201 * 2 1 3 5 5 C 1.37100 * 120.00275 * 124.06199 * 4 2 1 6 6 H 1.07995 * 119.99963 * 154.99932 * 5 4 2 7 7 C 1.38953 * 119.99717 * 334.99827 * 5 4 2 8 8 N 1.31411 * 120.00006 * 145.68328 * 7 5 4 9 9 Si 1.86797 * 119.99961 * 325.67998 * 7 5 4 10 10 H 1.48497 * 109.47411 * 93.74243 * 9 7 5 11 11 H 1.48506 * 109.47083 * 213.73891 * 9 7 5 12 12 H 1.48505 * 109.47358 * 333.73898 * 9 7 5 13 13 C 1.34778 * 119.99700 * 304.06045 * 4 2 1 14 14 O 1.21292 * 120.00429 * 4.44438 * 13 4 2 15 15 C 1.50705 * 119.99752 * 184.43689 * 13 4 2 16 16 H 1.08996 * 110.27391 * 31.37962 * 15 13 4 17 17 C 1.54595 * 110.30780 * 153.57132 * 15 13 4 18 18 C 1.54928 * 102.92237 * 140.87618 * 17 15 13 19 19 N 1.48531 * 103.22986 * 322.58540 * 18 17 15 20 20 C 1.46900 * 111.00374 * 159.72021 * 19 18 17 21 21 C 1.47903 * 105.81812 * 39.20712 * 19 18 17 22 22 H 1.08997 * 109.47103 * 308.04420 * 1 2 3 23 23 H 1.09000 * 109.46707 * 68.04645 * 1 2 3 24 24 H 1.08996 * 109.46843 * 188.03970 * 1 2 3 25 25 H 1.08998 * 109.47357 * 240.00428 * 2 1 3 26 26 H 1.09000 * 109.46671 * 180.83765 * 3 2 1 27 27 H 1.08996 * 109.47367 * 300.83784 * 3 2 1 28 28 H 1.08994 * 109.46904 * 60.84283 * 3 2 1 29 29 H 0.96998 * 120.00245 * 179.97438 * 8 7 5 30 30 H 1.09007 * 110.72541 * 259.23932 * 17 15 13 31 31 H 1.09000 * 110.72433 * 22.51140 * 17 15 13 32 32 H 1.08997 * 110.66825 * 81.02123 * 18 17 15 33 33 H 1.09011 * 110.66821 * 203.98429 * 18 17 15 34 34 H 1.09001 * 109.47114 * 302.60486 * 20 19 18 35 35 H 1.09001 * 109.46579 * 62.60644 * 20 19 18 36 36 H 1.08998 * 109.46821 * 182.60556 * 20 19 18 37 37 H 1.09003 * 109.92037 * 215.31774 * 21 19 18 38 38 H 1.08996 * 109.91679 * 94.02375 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8739 -1.7548 1.0720 6 1 3.5404 -2.0091 1.8828 7 6 2.8832 -2.5060 -0.0969 8 7 4.0087 -3.0218 -0.5374 9 14 1.2959 -2.7827 -1.0420 10 1 1.1611 -1.7466 -2.0973 11 1 1.3218 -4.1282 -1.6699 12 1 0.1430 -2.6933 -0.1103 13 6 1.6267 -0.2798 2.4185 14 8 0.8080 0.6086 2.5264 15 6 2.2058 -0.9245 3.6515 16 1 3.2293 -1.2485 3.4630 17 6 2.1631 0.0604 4.8423 18 6 1.7812 -0.8531 6.0339 19 7 0.8139 -1.8075 5.4342 20 6 0.6997 -3.0238 6.2500 21 6 1.3384 -2.1201 4.0871 22 1 -0.3633 0.6333 0.8093 23 1 -0.3633 0.3842 -0.9532 24 1 -0.3633 -1.0175 0.1437 25 1 1.8934 -0.5137 -0.8900 26 1 3.1299 1.4425 -0.0150 27 1 1.6644 1.9607 -0.8823 28 1 1.6890 1.9519 0.8974 29 1 4.0152 -3.5466 -1.3532 30 1 3.1410 0.5146 5.0024 31 1 1.4030 0.8252 4.6833 32 1 2.6576 -1.3799 6.4113 33 1 1.3110 -0.2730 6.8282 34 1 1.6821 -3.4840 6.3556 35 1 0.3117 -2.7653 7.2352 36 1 0.0205 -3.7245 5.7643 37 1 0.5123 -2.2535 3.3886 38 1 1.9453 -3.0246 4.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386259265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:58 Heat of formation + Delta-G solvation = -32.713502 kcal Electronic energy + Delta-G solvation = -18680.269823 eV Core-core repulsion = 15943.630001 eV Total energy + Delta-G solvation = -2736.639822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29871 -39.27573 -36.96878 -34.63292 -33.49827 -32.40117 -29.86207 -28.17294 -26.96921 -26.49391 -23.90988 -22.14352 -21.79910 -20.58035 -18.78558 -17.93095 -17.12762 -16.52498 -16.42607 -15.84931 -15.48316 -15.21123 -15.10833 -14.67710 -14.26002 -14.06853 -13.90291 -13.28722 -13.21802 -13.05312 -12.94252 -12.71058 -12.65879 -12.42373 -12.30561 -12.12834 -12.00111 -11.72447 -11.61880 -11.44783 -10.98605 -10.08836 -9.80775 -9.37658 -8.57147 -5.93302 1.18901 1.32745 1.42506 1.92793 2.18302 2.58999 2.96593 3.11154 3.75009 3.82228 3.94097 4.11601 4.25945 4.33748 4.36270 4.44088 4.52577 4.59368 4.65459 4.70201 4.75319 4.80391 4.89111 4.90450 4.96920 4.99221 5.05243 5.13679 5.28014 5.34351 5.36838 5.45788 5.89254 6.04205 6.13577 6.31759 6.99489 7.53764 7.88703 8.55979 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.009568 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.796656 B = 2925.724559 C = 3402.171065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 C -0.147 4.147 4 N -0.464 5.464 5 C -0.352 4.352 6 H 0.092 0.908 7 C 0.037 3.963 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.260 1.260 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.481 3.519 14 O -0.603 6.603 15 C -0.106 4.106 16 H 0.087 0.913 17 C -0.108 4.108 18 C 0.043 3.957 19 N -0.539 5.539 20 C 0.016 3.984 21 C 0.070 3.930 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.279 0.721 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 2.012 7.425 8.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 C -0.205 4.205 4 N -0.184 5.184 5 C -0.479 4.479 6 H 0.110 0.890 7 C -0.168 4.168 8 N -0.513 5.513 9 Si 0.727 3.273 10 H -0.186 1.186 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.271 3.729 14 O -0.489 6.489 15 C -0.127 4.127 16 H 0.105 0.895 17 C -0.147 4.147 18 C -0.084 4.084 19 N -0.263 5.263 20 C -0.132 4.132 21 C -0.059 4.059 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.284 2.538 7.278 8.819 hybrid contribution 0.447 -1.080 -0.879 1.462 sum -3.838 1.458 6.400 7.604 Atomic orbital electron populations 1.22423 0.95043 1.02190 1.03371 1.21309 0.94640 0.94416 0.88542 1.21964 1.00561 0.95042 1.02906 1.44010 1.42200 1.27897 1.04301 1.18996 1.16174 1.08619 1.04093 0.89027 1.25568 0.98158 0.96220 0.96889 1.69999 1.26234 1.33265 1.21787 0.86739 0.83224 0.77443 0.79846 1.18550 1.21736 1.18438 1.20428 0.82809 0.84707 0.84971 1.90440 1.36284 1.35225 1.86918 1.21952 1.00156 0.96849 0.93779 0.89468 1.22477 1.02427 0.97486 0.92267 1.23251 0.94317 0.94056 0.96766 1.64720 1.45843 1.13732 1.02052 1.22571 1.00787 0.91326 0.98501 1.22411 0.96550 0.95719 0.91183 0.90482 0.90435 0.93901 0.91047 0.93352 0.90006 0.92241 0.91136 0.89750 0.90929 0.92374 0.88349 0.94746 0.89457 0.91581 0.93074 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.05 7.99 71.98 0.58 -6.47 16 2 C 0.11 5.03 2.11 44.99 0.09 5.13 16 3 C -0.15 -5.67 9.19 71.98 0.66 -5.01 16 4 N -0.46 -22.19 2.31 -613.13 -1.42 -23.60 16 5 C -0.35 -18.15 9.32 84.04 0.78 -17.37 16 6 H 0.09 4.91 6.19 -2.91 -0.02 4.89 16 7 C 0.04 1.94 4.95 84.93 0.42 2.37 16 8 N -0.88 -47.75 13.96 21.66 0.30 -47.44 16 9 Si 0.90 41.15 23.90 68.60 1.64 42.78 16 10 H -0.26 -11.20 6.58 99.48 0.65 -10.55 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.97 5.64 99.48 0.56 -11.41 16 13 C 0.48 22.04 5.95 87.66 0.52 22.56 16 14 O -0.60 -29.01 12.01 -3.07 -0.04 -29.05 16 15 C -0.11 -4.13 2.66 -10.66 -0.03 -4.16 16 16 H 0.09 3.51 6.28 -2.39 -0.02 3.50 16 17 C -0.11 -3.53 6.55 31.80 0.21 -3.32 16 18 C 0.04 1.17 6.56 86.65 0.57 1.74 16 19 N -0.54 -16.91 5.55 -909.17 -5.05 -21.95 16 20 C 0.02 0.39 9.40 127.69 1.20 1.59 16 21 C 0.07 2.59 6.35 86.45 0.55 3.14 16 22 H 0.08 3.29 6.08 -2.39 -0.01 3.28 16 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.04 1.85 5.33 -2.39 -0.01 1.83 16 25 H 0.07 3.28 4.18 -2.39 -0.01 3.27 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.06 2.41 6.61 -2.39 -0.02 2.39 16 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.07 2.68 6.85 -2.39 -0.02 2.66 16 32 H 0.06 1.38 7.96 -2.39 -0.02 1.36 16 33 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.03 0.78 8.00 -2.39 -0.02 0.76 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 2.16 7.68 -2.39 -0.02 2.14 16 38 H 0.05 1.87 7.73 -2.39 -0.02 1.86 16 Total: -1.00 -58.94 286.28 1.83 -57.11 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.84 Total: 21.97 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.55 Total: 0.18 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -6.16 Total: -93.00 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.04 Total: -29.05 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.64 Total: 42.78 kcal Total: -58.94 1.83 -57.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386259265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.398 kcal (2) G-P(sol) polarization free energy of solvation -58.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds