Wall clock time and date at job start Mon Mar 30 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46739 * 2 1 4 4 H 1.08998 * 109.47201 * 305.30899 * 3 2 1 5 5 C 1.50708 * 109.46754 * 185.31712 * 3 2 1 6 6 H 1.08002 * 119.99611 * 244.37465 * 5 3 2 7 7 C 1.37875 * 120.00230 * 64.36825 * 5 3 2 8 8 N 1.31515 * 119.99896 * 7.38227 * 7 5 3 9 9 Si 1.86797 * 119.99910 * 187.37539 * 7 5 3 10 10 H 1.48500 * 109.47193 * 60.00614 * 9 7 5 11 11 H 1.48504 * 109.46787 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47439 * 300.00108 * 9 7 5 13 13 N 1.46898 * 109.47376 * 65.31721 * 3 2 1 14 14 C 1.46896 * 110.99839 * 205.29187 * 13 3 2 15 15 H 1.08991 * 110.85985 * 327.97328 * 14 13 3 16 16 C 1.54634 * 110.96688 * 91.76187 * 14 13 3 17 17 C 1.51343 * 104.16576 * 142.88703 * 16 14 13 18 18 O 1.21284 * 124.92583 * 163.79549 * 17 16 14 19 19 N 1.34416 * 110.13068 * 343.80198 * 17 16 14 20 20 C 1.46505 * 124.35027 * 179.58202 * 19 17 16 21 21 C 1.52997 * 109.46918 * 269.97393 * 20 19 17 22 22 C 1.46764 * 111.30207 * 359.55669 * 19 17 16 23 23 H 1.08999 * 109.46733 * 174.11201 * 1 2 3 24 24 H 1.08993 * 109.46846 * 294.11506 * 1 2 3 25 25 H 1.08996 * 109.46905 * 54.11232 * 1 2 3 26 26 H 1.09000 * 109.47090 * 240.00116 * 2 1 3 27 27 H 1.08997 * 109.47029 * 119.99917 * 2 1 3 28 28 H 0.97001 * 120.00185 * 2.92330 * 8 7 5 29 29 H 1.00895 * 110.99642 * 329.24709 * 13 3 2 30 30 H 1.08994 * 110.48843 * 261.59105 * 16 14 13 31 31 H 1.09002 * 110.48485 * 24.24056 * 16 14 13 32 32 H 1.08999 * 109.47324 * 29.97212 * 20 19 17 33 33 H 1.08998 * 109.47152 * 149.97135 * 20 19 17 34 34 H 1.09003 * 109.47023 * 179.97438 * 21 20 19 35 35 H 1.09006 * 109.47332 * 299.99870 * 21 20 19 36 36 H 1.08998 * 109.47420 * 59.99906 * 21 20 19 37 37 H 1.09003 * 110.24714 * 258.01997 * 22 19 17 38 38 H 1.09004 * 110.31580 * 136.05702 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6011 1.9831 -0.8386 5 6 3.5413 1.4446 -0.1317 6 1 4.1534 1.8236 0.6734 7 6 4.1333 0.9625 -1.2797 8 7 3.3911 0.6366 -2.3153 9 14 5.9897 0.7725 -1.3643 10 1 6.4397 -0.1679 -0.3067 11 1 6.3724 0.2385 -2.6961 12 1 6.6327 2.0949 -1.1572 13 7 1.6579 2.0970 1.2584 14 6 1.5714 3.5536 1.0891 15 1 2.2907 3.9016 0.3479 16 6 0.1349 3.9823 0.7098 17 6 -0.0667 5.2911 1.4425 18 8 -0.9429 6.0942 1.2011 19 7 0.8664 5.4341 2.3994 20 6 0.9662 6.5930 3.2901 21 6 1.8723 7.6488 2.6537 22 6 1.7720 4.2798 2.4377 23 1 -0.3633 -1.0223 -0.1054 24 1 -0.3633 0.4199 0.9379 25 1 -0.3633 0.6024 -0.8326 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4314 0.7751 -2.2871 29 1 0.7906 1.7220 1.6122 30 1 0.0527 4.1305 -0.3668 31 1 -0.5871 3.2398 1.0500 32 1 -0.0261 7.0147 3.4503 33 1 1.3871 6.2813 4.2460 34 1 1.9462 8.5112 3.3162 35 1 2.8647 7.2271 2.4935 36 1 1.4514 7.9604 1.6978 37 1 1.5078 3.6202 3.2643 38 1 2.8053 4.6126 2.5368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391535911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:54 Heat of formation + Delta-G solvation = -44.846012 kcal Electronic energy + Delta-G solvation = -17891.174001 eV Core-core repulsion = 15154.008074 eV Total energy + Delta-G solvation = -2737.165927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26213 -37.08838 -35.84440 -33.85904 -31.90797 -30.71746 -28.50258 -27.09389 -25.60031 -23.29956 -22.94324 -20.92518 -20.02782 -19.14962 -16.86685 -16.71402 -16.06432 -15.38856 -14.81821 -14.14164 -13.98222 -13.74680 -13.66330 -13.27129 -13.07055 -12.64221 -12.51114 -12.37494 -12.06265 -11.88558 -11.35612 -11.28953 -11.15032 -10.82891 -10.76781 -10.58014 -10.10571 -10.06603 -10.01330 -9.64395 -8.74974 -8.60644 -8.39665 -7.47043 -6.34519 -4.06632 2.74374 3.12267 3.43071 3.45044 3.63492 4.45056 4.54029 4.82374 4.95914 5.03289 5.14393 5.29023 5.32202 5.34959 5.53433 5.62252 5.72560 5.81106 5.85637 5.86843 5.90862 6.05567 6.10293 6.13525 6.36759 6.55454 6.66897 6.72372 6.80993 7.07813 7.22981 7.31070 7.88083 8.00664 8.32453 8.35550 8.60145 8.87319 9.63009 11.00301 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006698 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.702277 B = 4179.093349 C = 4887.383563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.581 4.581 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.284 1.284 12 H -0.289 1.289 13 N -0.665 5.665 14 C 0.092 3.908 15 H 0.103 0.897 16 C -0.186 4.186 17 C 0.522 3.478 18 O -0.546 6.546 19 N -0.620 5.620 20 C 0.122 3.878 21 C -0.170 4.170 22 C 0.110 3.890 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.269 0.731 29 H 0.322 0.678 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 6.459 9.452 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.101 3.899 4 H 0.015 0.985 5 C -0.619 4.619 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.550 5.550 9 Si 0.894 3.106 10 H -0.215 1.215 11 H -0.210 1.210 12 H -0.216 1.216 13 N -0.296 5.296 14 C -0.021 4.021 15 H 0.121 0.879 16 C -0.228 4.228 17 C 0.310 3.690 18 O -0.424 6.424 19 N -0.354 5.354 20 C 0.000 4.000 21 C -0.228 4.228 22 C -0.013 4.013 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.016 6.412 8.642 10.948 hybrid contribution -2.031 0.561 0.528 2.173 sum -4.048 6.973 9.170 12.211 Atomic orbital electron populations 1.21910 0.98829 1.00350 1.00077 1.21844 0.92021 1.00438 1.02481 1.19325 0.96486 0.89390 0.84724 0.98517 1.21948 0.90647 1.45290 1.04039 0.92538 1.25752 1.06730 0.93947 0.92176 1.70816 1.07882 1.45518 1.30780 0.83586 0.74572 0.76458 0.75947 1.21454 1.20979 1.21606 1.60539 1.35881 1.00434 1.32725 1.22405 0.93607 0.90670 0.95371 0.87860 1.23230 1.01029 0.96136 1.02453 1.20955 0.80330 0.87865 0.79884 1.90668 1.35046 1.48493 1.68159 1.48421 1.31630 1.20257 1.35098 1.21287 1.00815 0.85517 0.92377 1.22162 1.00282 0.98677 1.01684 1.22217 0.93803 0.85959 0.99355 0.93853 0.94013 0.93650 0.90742 0.92758 0.91957 0.85958 0.88401 0.88356 0.90405 0.90457 0.91665 0.92151 0.92311 0.90709 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.63 37.16 0.36 -2.31 16 2 C -0.13 -2.76 5.21 -26.73 -0.14 -2.90 16 3 C 0.21 4.72 1.53 -68.86 -0.11 4.62 16 4 H 0.00 -0.07 7.24 -51.93 -0.38 -0.44 16 5 C -0.58 -15.19 8.51 -34.44 -0.29 -15.49 16 6 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 7 C 0.02 0.48 5.19 -17.82 -0.09 0.39 16 8 N -0.91 -26.11 12.84 55.43 0.71 -25.39 16 9 Si 1.07 24.33 29.91 -169.99 -5.08 19.25 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.67 -12.46 6.15 -99.25 -0.61 -13.07 16 14 C 0.09 1.55 3.22 -66.08 -0.21 1.33 16 15 H 0.10 2.00 7.73 -51.93 -0.40 1.60 16 16 C -0.19 -2.95 6.56 -26.71 -0.18 -3.13 16 17 C 0.52 8.71 8.02 -10.83 -0.09 8.62 16 18 O -0.55 -10.77 17.59 5.55 0.10 -10.67 16 19 N -0.62 -8.76 2.93 -172.38 -0.51 -9.27 16 20 C 0.12 1.40 6.65 -4.04 -0.03 1.37 16 21 C -0.17 -1.82 10.24 37.16 0.38 -1.44 16 22 C 0.11 1.54 7.08 -3.12 -0.02 1.52 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.80 6.23 -51.93 -0.32 1.48 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.63 6.14 -40.82 -0.25 7.38 16 29 H 0.32 5.43 5.94 -39.29 -0.23 5.19 16 30 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 32 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -29.76 307.19 -7.34 -37.11 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.17 Total: 4.82 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.42 Total: -7.41 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.40 Total: -47.72 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.10 Total: -10.67 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.76 -7.34 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391535911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.740 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds