Wall clock time and date at job start Mon Mar 30 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46739 * 2 1 4 4 H 1.08998 * 109.47201 * 305.30899 * 3 2 1 5 5 C 1.50708 * 109.46754 * 185.31712 * 3 2 1 6 6 H 1.08002 * 119.99611 * 244.37465 * 5 3 2 7 7 C 1.37875 * 120.00230 * 64.36825 * 5 3 2 8 8 N 1.31515 * 119.99896 * 7.38227 * 7 5 3 9 9 Si 1.86797 * 119.99910 * 187.37539 * 7 5 3 10 10 H 1.48500 * 109.47193 * 60.00614 * 9 7 5 11 11 H 1.48504 * 109.46787 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47439 * 300.00108 * 9 7 5 13 13 N 1.46898 * 109.47376 * 65.31721 * 3 2 1 14 14 C 1.46896 * 110.99839 * 205.29187 * 13 3 2 15 15 H 1.08991 * 110.85985 * 327.97328 * 14 13 3 16 16 C 1.54634 * 110.96688 * 91.76187 * 14 13 3 17 17 C 1.51343 * 104.16576 * 142.88703 * 16 14 13 18 18 O 1.21284 * 124.92583 * 163.79549 * 17 16 14 19 19 N 1.34416 * 110.13068 * 343.80198 * 17 16 14 20 20 C 1.46505 * 124.35027 * 179.58202 * 19 17 16 21 21 C 1.52997 * 109.46918 * 269.97393 * 20 19 17 22 22 C 1.46764 * 111.30207 * 359.55669 * 19 17 16 23 23 H 1.08999 * 109.46733 * 174.11201 * 1 2 3 24 24 H 1.08993 * 109.46846 * 294.11506 * 1 2 3 25 25 H 1.08996 * 109.46905 * 54.11232 * 1 2 3 26 26 H 1.09000 * 109.47090 * 240.00116 * 2 1 3 27 27 H 1.08997 * 109.47029 * 119.99917 * 2 1 3 28 28 H 0.97001 * 120.00185 * 2.92330 * 8 7 5 29 29 H 1.00895 * 110.99642 * 329.24709 * 13 3 2 30 30 H 1.08994 * 110.48843 * 261.59105 * 16 14 13 31 31 H 1.09002 * 110.48485 * 24.24056 * 16 14 13 32 32 H 1.08999 * 109.47324 * 29.97212 * 20 19 17 33 33 H 1.08998 * 109.47152 * 149.97135 * 20 19 17 34 34 H 1.09003 * 109.47023 * 179.97438 * 21 20 19 35 35 H 1.09006 * 109.47332 * 299.99870 * 21 20 19 36 36 H 1.08998 * 109.47420 * 59.99906 * 21 20 19 37 37 H 1.09003 * 110.24714 * 258.01997 * 22 19 17 38 38 H 1.09004 * 110.31580 * 136.05702 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6011 1.9831 -0.8386 5 6 3.5413 1.4446 -0.1317 6 1 4.1534 1.8236 0.6734 7 6 4.1333 0.9625 -1.2797 8 7 3.3911 0.6366 -2.3153 9 14 5.9897 0.7725 -1.3643 10 1 6.4397 -0.1679 -0.3067 11 1 6.3724 0.2385 -2.6961 12 1 6.6327 2.0949 -1.1572 13 7 1.6579 2.0970 1.2584 14 6 1.5714 3.5536 1.0891 15 1 2.2907 3.9016 0.3479 16 6 0.1349 3.9823 0.7098 17 6 -0.0667 5.2911 1.4425 18 8 -0.9429 6.0942 1.2011 19 7 0.8664 5.4341 2.3994 20 6 0.9662 6.5930 3.2901 21 6 1.8723 7.6488 2.6537 22 6 1.7720 4.2798 2.4377 23 1 -0.3633 -1.0223 -0.1054 24 1 -0.3633 0.4199 0.9379 25 1 -0.3633 0.6024 -0.8326 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4314 0.7751 -2.2871 29 1 0.7906 1.7220 1.6122 30 1 0.0527 4.1305 -0.3668 31 1 -0.5871 3.2398 1.0500 32 1 -0.0261 7.0147 3.4503 33 1 1.3871 6.2813 4.2460 34 1 1.9462 8.5112 3.3162 35 1 2.8647 7.2271 2.4935 36 1 1.4514 7.9604 1.6978 37 1 1.5078 3.6202 3.2643 38 1 2.8053 4.6126 2.5368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391535911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:54 Heat of formation + Delta-G solvation = -64.310054 kcal Electronic energy + Delta-G solvation = -17892.018025 eV Core-core repulsion = 15154.008074 eV Total energy + Delta-G solvation = -2738.009951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55483 -38.66747 -37.26682 -35.26239 -33.68111 -32.06353 -29.78855 -28.49098 -27.31678 -24.87128 -24.18299 -22.30632 -21.77293 -20.39274 -18.76701 -18.01623 -17.40567 -16.69126 -16.39325 -15.65158 -15.57079 -15.18742 -14.82689 -14.67082 -14.25673 -14.20612 -14.05127 -13.74420 -13.26272 -13.14784 -12.87559 -12.71578 -12.54164 -12.37848 -12.23612 -12.06173 -11.91963 -11.69802 -11.63714 -11.05871 -10.61123 -10.42090 -9.77902 -9.13831 -8.46547 -6.20144 1.42633 1.57859 1.64204 1.83078 1.98512 2.62442 3.13942 3.26975 3.49273 3.64648 3.97774 4.06238 4.19535 4.24725 4.36123 4.40334 4.47099 4.52221 4.56096 4.59201 4.75183 4.84205 4.90515 4.94259 4.97980 5.10865 5.18560 5.24168 5.38854 5.55244 5.57708 5.99039 6.05175 6.20307 6.50358 6.63902 6.92920 7.04913 7.56798 8.87232 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006698 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.702277 B = 4179.093349 C = 4887.383563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.213 3.787 4 H -0.030 1.030 5 C -0.587 4.587 6 H 0.049 0.951 7 C -0.030 4.030 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.660 5.660 14 C 0.092 3.908 15 H 0.072 0.928 16 C -0.179 4.179 17 C 0.518 3.482 18 O -0.581 6.581 19 N -0.611 5.611 20 C 0.115 3.885 21 C -0.165 4.165 22 C 0.121 3.879 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 6.673 11.661 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.105 3.895 4 H -0.013 1.013 5 C -0.625 4.625 6 H 0.067 0.933 7 C -0.229 4.229 8 N -0.578 5.578 9 Si 0.931 3.069 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.021 4.021 15 H 0.091 0.909 16 C -0.221 4.221 17 C 0.306 3.694 18 O -0.462 6.462 19 N -0.344 5.344 20 C -0.006 4.006 21 C -0.223 4.223 22 C -0.002 4.002 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.760 6.638 10.900 12.883 hybrid contribution -2.112 0.534 -0.114 2.181 sum -3.871 7.173 10.786 13.519 Atomic orbital electron populations 1.21802 0.95443 1.01705 1.01221 1.21669 0.95039 0.98797 1.00677 1.19095 0.94653 0.90311 0.85478 1.01294 1.22283 0.92640 1.44200 1.03412 0.93300 1.26966 1.10088 0.93705 0.92111 1.70917 1.07484 1.47591 1.31812 0.83039 0.70606 0.77338 0.75938 1.19853 1.21655 1.20051 1.60416 1.36898 1.01317 1.30474 1.22283 0.93438 0.89736 0.96603 0.90947 1.23135 1.00668 0.96480 1.01816 1.21000 0.80426 0.87623 0.80367 1.90649 1.36676 1.49516 1.69361 1.48516 1.30442 1.20919 1.34504 1.21583 1.01136 0.84698 0.93144 1.22129 0.99752 0.99477 1.00984 1.22133 0.94407 0.85853 0.97821 0.92087 0.91463 0.94204 0.94141 0.92867 0.93089 0.84382 0.89654 0.86759 0.90798 0.87201 0.89008 0.92086 0.94823 0.88799 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.63 71.98 0.69 -4.06 16 2 C -0.12 -5.24 5.21 30.60 0.16 -5.08 16 3 C 0.21 9.72 1.53 44.17 0.07 9.79 16 4 H -0.03 -1.55 7.24 -2.39 -0.02 -1.57 16 5 C -0.59 -30.92 8.51 25.60 0.22 -30.71 16 6 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 7 C -0.03 -1.67 5.19 84.65 0.44 -1.23 16 8 N -0.94 -55.06 12.84 21.45 0.28 -54.78 16 9 Si 1.11 48.99 29.91 68.60 2.05 51.04 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 N -0.66 -23.87 6.15 -467.91 -2.88 -26.75 16 14 C 0.09 3.00 3.22 45.98 0.15 3.15 16 15 H 0.07 2.85 7.73 -2.39 -0.02 2.83 16 16 C -0.18 -5.56 6.56 30.61 0.20 -5.36 16 17 C 0.52 16.84 8.02 87.92 0.71 17.55 16 18 O -0.58 -22.82 17.59 -3.04 -0.05 -22.87 16 19 N -0.61 -16.03 2.93 -817.89 -2.40 -18.43 16 20 C 0.12 2.34 6.65 86.38 0.57 2.91 16 21 C -0.17 -3.21 10.24 71.98 0.74 -2.47 16 22 C 0.12 3.09 7.08 86.83 0.62 3.70 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.86 6.65 -2.39 -0.02 1.84 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.99 6.23 -2.39 -0.01 1.98 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.26 15.23 6.14 -92.71 -0.57 14.67 16 29 H 0.34 10.53 5.94 -89.70 -0.53 10.00 16 30 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.11 3.16 7.58 -2.39 -0.02 3.15 16 32 H 0.07 1.60 7.92 -2.39 -0.02 1.59 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.31 307.19 2.25 -63.05 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.70 Total: 20.54 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.56 Total: -11.80 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.00 Total: -99.96 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Total: -65.31 2.25 -63.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391535911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.259 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds