Wall clock time and date at job start Mon Mar 30 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08999 * 109.47751 * 303.74206 * 3 2 1 5 5 C 1.50706 * 109.47116 * 183.74050 * 3 2 1 6 6 H 1.07994 * 119.99838 * 240.00166 * 5 3 2 7 7 C 1.37871 * 119.99607 * 59.99987 * 5 3 2 8 8 N 1.31520 * 119.99619 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00410 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46817 * 269.99596 * 9 7 5 11 11 H 1.48496 * 109.47225 * 29.99642 * 9 7 5 12 12 H 1.48499 * 109.47256 * 150.00107 * 9 7 5 13 13 N 1.46903 * 109.47132 * 63.74101 * 3 2 1 14 14 C 1.46898 * 111.00025 * 213.46538 * 13 3 2 15 15 H 1.09003 * 109.60420 * 31.61988 * 14 13 3 16 16 C 1.53338 * 109.60772 * 271.13008 * 14 13 3 17 17 C 1.53083 * 108.41792 * 172.69800 * 16 14 13 18 18 C 1.50173 * 109.88576 * 48.91185 * 17 16 14 19 19 O 1.21283 * 118.24229 * 162.44001 * 18 17 16 20 20 N 1.33349 * 123.51280 * 342.42296 * 18 17 16 21 21 C 1.45761 * 124.10357 * 2.19754 * 20 18 17 22 22 H 1.09000 * 109.29720 * 220.63626 * 21 20 18 23 23 C 1.53003 * 109.13057 * 101.15616 * 21 20 18 24 24 H 1.08995 * 109.46634 * 174.84932 * 1 2 3 25 25 H 1.09005 * 109.46897 * 294.84299 * 1 2 3 26 26 H 1.08996 * 109.46986 * 54.84595 * 1 2 3 27 27 H 1.08994 * 109.47369 * 240.00472 * 2 1 3 28 28 H 1.09000 * 109.47236 * 119.99728 * 2 1 3 29 29 H 0.96997 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.00904 * 110.99869 * 89.51394 * 13 3 2 31 31 H 1.09000 * 109.67517 * 292.45088 * 16 14 13 32 32 H 1.09007 * 109.67268 * 52.97677 * 16 14 13 33 33 H 1.08998 * 109.39913 * 288.78634 * 17 16 14 34 34 H 1.08999 * 109.33478 * 168.99764 * 17 16 14 35 35 H 0.96996 * 117.95112 * 182.21848 * 20 18 17 36 36 H 1.08993 * 109.47149 * 299.06468 * 23 21 20 37 37 H 1.08999 * 109.47158 * 59.06746 * 23 21 20 38 38 H 1.09007 * 109.46687 * 179.06617 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6230 1.9754 -0.8545 5 6 3.5442 1.4436 -0.0927 6 1 4.1332 1.8939 0.6925 7 6 4.1682 0.8697 -1.1799 8 7 5.4809 0.8702 -1.2606 9 14 3.1493 0.0915 -2.5384 10 1 2.9212 -1.3424 -2.2264 11 1 1.8428 0.7901 -2.6394 12 1 3.8740 0.2079 -3.8293 13 7 1.6255 2.1084 1.2421 14 6 1.3561 3.5338 1.0106 15 1 0.9774 3.6748 -0.0018 16 6 2.6479 4.3386 1.1970 17 6 2.3819 5.7854 0.7733 18 6 1.1235 6.2847 1.4231 19 8 0.9348 7.4820 1.4639 20 7 0.2023 5.4821 1.9574 21 6 0.3199 4.0306 2.0196 22 1 -0.6470 3.5808 1.7942 23 6 0.7511 3.6225 3.4298 24 1 -0.3632 -1.0235 -0.0923 25 1 -0.3633 0.4318 0.9326 26 1 -0.3633 0.5917 -0.8402 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.9200 0.4668 -2.0257 30 1 2.3163 1.9841 1.9670 31 1 2.9490 4.3119 2.2442 32 1 3.4375 3.9140 0.5768 33 1 2.2726 5.8311 -0.3102 34 1 3.2203 6.4110 1.0794 35 1 -0.5963 5.8897 2.3275 36 1 1.7213 4.0648 3.6553 37 1 0.0143 3.9752 4.1514 38 1 0.8248 2.5364 3.4871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392962841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:38 Heat of formation + Delta-G solvation = -46.005344 kcal Electronic energy + Delta-G solvation = -18354.259437 eV Core-core repulsion = 15617.043237 eV Total energy + Delta-G solvation = -2737.216200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24978 -37.58953 -35.54123 -33.01093 -32.11596 -31.38283 -29.61008 -27.09734 -25.26272 -23.40975 -22.54315 -21.60321 -19.97731 -18.59568 -16.93528 -16.76286 -15.95453 -15.46653 -15.16105 -14.47933 -14.06679 -13.79145 -13.47909 -13.26870 -12.88991 -12.65686 -12.42104 -12.05974 -11.80531 -11.61198 -11.56130 -11.21805 -11.00265 -10.91585 -10.71822 -10.41010 -10.33198 -9.84436 -9.53321 -9.48022 -9.20023 -8.93754 -8.64738 -7.56014 -6.20927 -4.22614 2.83840 3.20151 3.31344 3.32701 3.46288 4.29565 4.68328 4.88753 4.99009 5.10143 5.15649 5.42727 5.52149 5.62373 5.63602 5.85296 5.94775 5.97902 5.98929 6.06450 6.16673 6.20301 6.30762 6.46807 6.61561 6.65735 6.72072 6.88029 6.95004 7.01041 7.19211 7.45140 7.50417 7.87638 8.22153 8.37864 8.39711 8.80585 9.42084 10.91269 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.007832 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.534304 B = 3574.319774 C = 4089.715188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.185 3.815 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.299 1.299 13 N -0.670 5.670 14 C 0.089 3.911 15 H 0.078 0.922 16 C -0.158 4.158 17 C -0.132 4.132 18 C 0.521 3.479 19 O -0.574 6.574 20 N -0.714 5.714 21 C 0.143 3.857 22 H 0.085 0.915 23 C -0.163 4.163 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.265 0.735 30 H 0.341 0.659 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 2.895 5.389 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.048 0.952 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.190 1.190 12 H -0.227 1.227 13 N -0.299 5.299 14 C -0.023 4.023 15 H 0.096 0.904 16 C -0.197 4.197 17 C -0.172 4.172 18 C 0.309 3.691 19 O -0.454 6.454 20 N -0.365 5.365 21 C 0.038 3.962 22 H 0.103 0.897 23 C -0.221 4.221 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.228 0.772 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.769 3.133 5.137 11.473 hybrid contribution 0.277 -0.146 -0.792 0.851 sum -9.492 2.987 4.345 10.859 Atomic orbital electron populations 1.21719 0.97618 0.99175 1.01421 1.21833 0.93770 0.99358 1.00435 1.19668 0.94476 0.90590 0.87687 0.95163 1.21694 0.90053 1.38957 1.07706 0.90531 1.24997 0.94714 0.95242 0.97948 1.69906 1.08166 1.44595 1.30535 0.86838 0.80349 0.79956 0.80961 1.20504 1.19039 1.22661 1.60658 1.50093 1.08274 1.10894 1.21654 0.93266 0.89708 0.97643 0.90422 1.22587 1.00736 0.93550 1.02783 1.21601 0.95076 0.98500 1.02048 1.20372 0.85329 0.85992 0.77371 1.90710 1.78865 1.16100 1.59732 1.45632 1.22298 1.07880 1.60677 1.21019 1.00500 0.78327 0.96377 0.89671 1.22227 1.01162 1.03212 0.95504 0.94927 0.92046 0.94251 0.93825 0.92259 0.92559 0.84010 0.91548 0.87886 0.88380 0.88678 0.77186 0.92590 0.93269 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.73 37.16 0.36 -2.00 16 2 C -0.12 -2.31 5.12 -26.73 -0.14 -2.44 16 3 C 0.18 3.81 1.62 -68.86 -0.11 3.70 16 4 H 0.03 0.67 6.30 -51.93 -0.33 0.34 16 5 C -0.55 -13.54 7.95 -34.44 -0.27 -13.81 16 6 H 0.08 2.04 7.28 -52.49 -0.38 1.66 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 8 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 9 Si 0.89 20.89 24.40 -169.99 -4.15 16.74 16 10 H -0.28 -6.45 6.84 56.52 0.39 -6.06 16 11 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 12 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.67 -11.18 4.67 -100.81 -0.47 -11.65 16 14 C 0.09 1.34 2.25 -67.58 -0.15 1.19 16 15 H 0.08 1.27 7.28 -51.93 -0.38 0.89 16 16 C -0.16 -2.41 5.18 -26.51 -0.14 -2.55 16 17 C -0.13 -1.92 6.03 -28.10 -0.17 -2.09 16 18 C 0.52 8.07 7.71 -11.87 -0.09 7.98 16 19 O -0.57 -10.83 17.78 5.56 0.10 -10.73 16 20 N -0.71 -9.16 5.02 -54.85 -0.28 -9.44 16 21 C 0.14 1.77 3.63 -68.37 -0.25 1.52 16 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.16 -1.85 8.87 37.16 0.33 -1.52 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.95 3.22 -51.93 -0.17 0.78 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.34 5.81 7.30 -39.29 -0.29 5.53 16 31 H 0.07 0.96 6.37 -51.93 -0.33 0.63 16 32 H 0.10 1.90 6.33 -51.92 -0.33 1.57 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.39 4.48 8.80 -40.82 -0.36 4.12 16 36 H 0.06 0.67 6.50 -51.93 -0.34 0.34 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.96 7.15 -51.93 -0.37 0.59 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -28.62 289.56 -6.21 -34.83 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.82 Total: 9.02 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.73 Total: -8.14 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.03 Total: -46.09 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.10 Total: -10.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.15 Total: 16.74 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.62 -6.21 -34.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392962841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.177 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds