Wall clock time and date at job start Mon Mar 30 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08999 * 109.47751 * 303.74206 * 3 2 1 5 5 C 1.50706 * 109.47116 * 183.74050 * 3 2 1 6 6 H 1.07994 * 119.99838 * 240.00166 * 5 3 2 7 7 C 1.37871 * 119.99607 * 59.99987 * 5 3 2 8 8 N 1.31520 * 119.99619 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00410 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46817 * 269.99596 * 9 7 5 11 11 H 1.48496 * 109.47225 * 29.99642 * 9 7 5 12 12 H 1.48499 * 109.47256 * 150.00107 * 9 7 5 13 13 N 1.46903 * 109.47132 * 63.74101 * 3 2 1 14 14 C 1.46898 * 111.00025 * 213.46538 * 13 3 2 15 15 H 1.09003 * 109.60420 * 31.61988 * 14 13 3 16 16 C 1.53338 * 109.60772 * 271.13008 * 14 13 3 17 17 C 1.53083 * 108.41792 * 172.69800 * 16 14 13 18 18 C 1.50173 * 109.88576 * 48.91185 * 17 16 14 19 19 O 1.21283 * 118.24229 * 162.44001 * 18 17 16 20 20 N 1.33349 * 123.51280 * 342.42296 * 18 17 16 21 21 C 1.45761 * 124.10357 * 2.19754 * 20 18 17 22 22 H 1.09000 * 109.29720 * 220.63626 * 21 20 18 23 23 C 1.53003 * 109.13057 * 101.15616 * 21 20 18 24 24 H 1.08995 * 109.46634 * 174.84932 * 1 2 3 25 25 H 1.09005 * 109.46897 * 294.84299 * 1 2 3 26 26 H 1.08996 * 109.46986 * 54.84595 * 1 2 3 27 27 H 1.08994 * 109.47369 * 240.00472 * 2 1 3 28 28 H 1.09000 * 109.47236 * 119.99728 * 2 1 3 29 29 H 0.96997 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.00904 * 110.99869 * 89.51394 * 13 3 2 31 31 H 1.09000 * 109.67517 * 292.45088 * 16 14 13 32 32 H 1.09007 * 109.67268 * 52.97677 * 16 14 13 33 33 H 1.08998 * 109.39913 * 288.78634 * 17 16 14 34 34 H 1.08999 * 109.33478 * 168.99764 * 17 16 14 35 35 H 0.96996 * 117.95112 * 182.21848 * 20 18 17 36 36 H 1.08993 * 109.47149 * 299.06468 * 23 21 20 37 37 H 1.08999 * 109.47158 * 59.06746 * 23 21 20 38 38 H 1.09007 * 109.46687 * 179.06617 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6230 1.9754 -0.8545 5 6 3.5442 1.4436 -0.0927 6 1 4.1332 1.8939 0.6925 7 6 4.1682 0.8697 -1.1799 8 7 5.4809 0.8702 -1.2606 9 14 3.1493 0.0915 -2.5384 10 1 2.9212 -1.3424 -2.2264 11 1 1.8428 0.7901 -2.6394 12 1 3.8740 0.2079 -3.8293 13 7 1.6255 2.1084 1.2421 14 6 1.3561 3.5338 1.0106 15 1 0.9774 3.6748 -0.0018 16 6 2.6479 4.3386 1.1970 17 6 2.3819 5.7854 0.7733 18 6 1.1235 6.2847 1.4231 19 8 0.9348 7.4820 1.4639 20 7 0.2023 5.4821 1.9574 21 6 0.3199 4.0306 2.0196 22 1 -0.6470 3.5808 1.7942 23 6 0.7511 3.6225 3.4298 24 1 -0.3632 -1.0235 -0.0923 25 1 -0.3633 0.4318 0.9326 26 1 -0.3633 0.5917 -0.8402 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.9200 0.4668 -2.0257 30 1 2.3163 1.9841 1.9670 31 1 2.9490 4.3119 2.2442 32 1 3.4375 3.9140 0.5768 33 1 2.2726 5.8311 -0.3102 34 1 3.2203 6.4110 1.0794 35 1 -0.5963 5.8897 2.3275 36 1 1.7213 4.0648 3.6553 37 1 0.0143 3.9752 4.1514 38 1 0.8248 2.5364 3.4871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392962841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:38 Heat of formation + Delta-G solvation = -67.129637 kcal Electronic energy + Delta-G solvation = -18355.175455 eV Core-core repulsion = 15617.043237 eV Total energy + Delta-G solvation = -2738.132218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47794 -38.97766 -37.00568 -34.44302 -33.89579 -32.68768 -30.83281 -28.69938 -26.61683 -24.60157 -24.17636 -22.83876 -21.58256 -19.90646 -18.69071 -18.04125 -17.17788 -17.05519 -16.58007 -15.83445 -15.61364 -15.00029 -14.80016 -14.74101 -14.45568 -14.14095 -13.83784 -13.45388 -13.19567 -13.16017 -12.66711 -12.52703 -12.48312 -12.37569 -12.18425 -11.92851 -11.68070 -11.45270 -11.17823 -11.10424 -10.77965 -10.59131 -10.06242 -9.05579 -8.27515 -6.30448 1.32755 1.38238 1.46687 1.60071 2.32953 2.34170 3.08028 3.38743 3.69699 3.81205 3.92688 4.23403 4.33670 4.40670 4.48013 4.52888 4.55743 4.74078 4.78525 4.87695 5.00067 5.01864 5.06782 5.14507 5.23994 5.35379 5.38233 5.51565 5.54894 5.55896 5.72089 5.89669 6.11416 6.33959 6.45428 6.68481 6.87386 7.22095 7.37903 8.87662 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.007832 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.534304 B = 3574.319774 C = 4089.715188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.191 3.809 4 H 0.024 0.976 5 C -0.531 4.531 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.247 1.247 12 H -0.308 1.308 13 N -0.652 5.652 14 C 0.086 3.914 15 H 0.068 0.932 16 C -0.148 4.148 17 C -0.128 4.128 18 C 0.523 3.477 19 O -0.609 6.609 20 N -0.699 5.699 21 C 0.152 3.848 22 H 0.107 0.893 23 C -0.159 4.159 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.341 0.659 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 2.558 6.128 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.081 3.919 4 H 0.041 0.959 5 C -0.570 4.570 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.171 1.171 12 H -0.237 1.237 13 N -0.281 5.281 14 C -0.025 4.025 15 H 0.086 0.914 16 C -0.187 4.187 17 C -0.169 4.169 18 C 0.311 3.689 19 O -0.493 6.493 20 N -0.349 5.349 21 C 0.047 3.953 22 H 0.125 0.875 23 C -0.217 4.217 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.242 0.758 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.495 2.780 5.905 14.097 hybrid contribution 1.139 -0.005 -0.935 1.474 sum -11.355 2.774 4.970 12.702 Atomic orbital electron populations 1.21635 0.94569 1.00578 1.02280 1.21773 0.96475 0.97847 0.99513 1.19513 0.91363 0.91916 0.89132 0.95861 1.22055 0.92432 1.36447 1.06030 0.93420 1.25752 0.95423 0.96418 1.00504 1.70049 1.10019 1.47005 1.31534 0.85960 0.79518 0.79620 0.77846 1.19788 1.17113 1.23705 1.60658 1.49270 1.09175 1.08957 1.21719 0.93817 0.88679 0.98281 0.91390 1.22419 0.99892 0.93953 1.02475 1.21558 0.95304 0.97855 1.02169 1.20372 0.85636 0.85605 0.77291 1.90701 1.79638 1.17554 1.61370 1.45521 1.22027 1.07926 1.59466 1.20985 1.00391 0.77775 0.96112 0.87530 1.22191 1.01296 1.03211 0.94988 0.93170 0.90546 0.94157 0.95542 0.92470 0.92895 0.84035 0.90734 0.91454 0.88245 0.88195 0.75812 0.93487 0.91233 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.73 71.98 0.70 -3.23 16 2 C -0.12 -4.43 5.12 30.60 0.16 -4.27 16 3 C 0.19 7.62 1.62 44.17 0.07 7.69 16 4 H 0.02 0.99 6.30 -2.39 -0.02 0.97 16 5 C -0.53 -26.66 7.95 25.60 0.20 -26.46 16 6 H 0.05 2.63 7.28 -2.91 -0.02 2.60 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -56.25 13.96 21.45 0.30 -55.96 16 9 Si 0.94 43.07 24.40 68.60 1.67 44.75 16 10 H -0.27 -12.02 6.84 99.48 0.68 -11.34 16 11 H -0.25 -10.44 6.53 99.48 0.65 -9.79 16 12 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 13 N -0.65 -20.56 4.67 -472.85 -2.21 -22.77 16 14 C 0.09 2.44 2.25 45.00 0.10 2.54 16 15 H 0.07 2.10 7.28 -2.39 -0.02 2.08 16 16 C -0.15 -4.47 5.18 30.74 0.16 -4.31 16 17 C -0.13 -3.66 6.03 29.71 0.18 -3.48 16 18 C 0.52 15.37 7.71 87.71 0.68 16.04 16 19 O -0.61 -22.31 17.78 -3.04 -0.05 -22.36 16 20 N -0.70 -16.02 5.02 -446.64 -2.24 -18.26 16 21 C 0.15 3.26 3.63 45.10 0.16 3.43 16 22 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 23 C -0.16 -3.07 8.87 71.98 0.64 -2.43 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 2.02 7.86 -2.38 -0.02 2.00 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.03 1.09 3.22 -2.39 -0.01 1.08 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.34 11.17 7.30 -89.69 -0.65 10.51 16 31 H 0.07 2.11 6.37 -2.39 -0.02 2.09 16 32 H 0.07 2.55 6.33 -2.38 -0.02 2.53 16 33 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.41 7.93 8.80 -92.71 -0.82 7.11 16 36 H 0.05 1.01 6.50 -2.39 -0.02 0.99 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.66 7.15 -2.38 -0.02 1.64 16 Total: -1.00 -62.22 289.56 0.49 -61.72 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.48 Total: 25.98 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.51 Total: -13.09 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -4.15 Total: -96.99 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.67 Total: 44.75 kcal Total: -62.22 0.49 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392962841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.406 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds