Wall clock time and date at job start Mon Mar 30 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47124 * 2 1 4 4 N 1.46502 * 109.46942 * 119.99896 * 2 1 3 5 5 C 1.46504 * 120.00096 * 119.09890 * 4 2 1 6 6 C 1.50697 * 109.47086 * 276.31844 * 5 4 2 7 7 H 1.08000 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00056 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00069 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99735 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47317 * 90.00063 * 10 8 6 12 12 H 1.48504 * 109.46842 * 210.00261 * 10 8 6 13 13 H 1.48498 * 109.46944 * 329.99686 * 10 8 6 14 14 C 1.34777 * 119.99920 * 299.10261 * 4 2 1 15 15 O 1.21284 * 119.99906 * 5.21796 * 14 4 2 16 16 C 1.50700 * 120.00024 * 185.22577 * 14 4 2 17 17 C 1.53004 * 112.93435 * 299.12004 * 16 14 4 18 18 C 1.53936 * 113.73379 * 167.55683 * 16 14 4 19 19 N 1.47963 * 86.30111 * 269.19573 * 18 16 14 20 20 C 1.48189 * 90.67421 * 335.41054 * 19 18 16 21 21 H 1.09000 * 109.47463 * 306.36746 * 1 2 3 22 22 H 1.09000 * 109.47231 * 66.36396 * 1 2 3 23 23 H 1.09001 * 109.47323 * 186.35961 * 1 2 3 24 24 H 1.09003 * 109.46906 * 239.99744 * 2 1 3 25 25 H 1.09000 * 109.47088 * 184.14032 * 3 2 1 26 26 H 1.09004 * 109.46989 * 304.13555 * 3 2 1 27 27 H 1.08991 * 109.47729 * 64.13555 * 3 2 1 28 28 H 1.09000 * 109.47029 * 36.31754 * 5 4 2 29 29 H 1.08999 * 109.46956 * 156.31327 * 5 4 2 30 30 H 0.97003 * 119.99834 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.47169 * 295.16907 * 17 16 14 32 32 H 1.08997 * 109.47209 * 55.16601 * 17 16 14 33 33 H 1.09000 * 109.46892 * 175.16931 * 17 16 14 34 34 H 1.08999 * 113.75810 * 23.56779 * 18 16 14 35 35 H 1.08997 * 113.75892 * 154.82888 * 18 16 14 36 36 H 1.00903 * 110.99706 * 88.25609 * 19 18 16 37 37 H 1.08999 * 113.66005 * 270.26727 * 20 19 18 38 38 H 1.09003 * 113.92653 * 138.94818 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8442 -1.8932 1.0619 6 6 1.9547 -3.0949 0.8730 7 1 0.8815 -2.9750 0.8552 8 6 2.5109 -4.3477 0.7240 9 7 1.7347 -5.3964 0.5596 10 14 4.3671 -4.5554 0.7570 11 1 4.8136 -4.7956 2.1527 12 1 4.7508 -5.7121 -0.0916 13 1 5.0123 -3.3236 0.2358 14 6 1.7077 -0.2196 2.4202 15 8 0.9474 0.7185 2.5340 16 6 2.3050 -0.8586 3.6474 17 6 1.9290 -2.3344 3.7942 18 6 2.1042 -0.0372 4.9337 19 7 3.3991 0.6030 4.6128 20 6 3.8091 -0.5820 3.8230 21 1 -0.3634 0.6093 0.8275 22 1 -0.3634 0.4120 -0.9414 23 1 -0.3634 -1.0213 0.1138 24 1 1.8933 -0.5139 -0.8900 25 1 3.1274 1.4433 -0.0742 26 1 1.6174 1.9772 -0.8506 27 1 1.7385 1.9345 0.9246 28 1 3.5012 -1.7882 0.1986 29 1 3.4450 -2.0236 1.9620 30 1 2.1260 -6.2778 0.4551 31 1 0.8540 -2.4216 3.9517 32 1 2.2082 -2.8723 2.8882 33 1 2.4570 -2.7607 4.6472 34 1 1.2548 0.6446 4.8912 35 1 2.1241 -0.6356 5.8444 36 1 3.2673 1.4065 4.0169 37 1 4.3294 -1.3396 4.4091 38 1 4.3222 -0.3374 2.8929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399200269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:50 Heat of formation + Delta-G solvation = 2.759153 kcal Electronic energy + Delta-G solvation = -18956.853604 eV Core-core repulsion = 16221.751992 eV Total energy + Delta-G solvation = -2735.101612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70011 -37.96538 -35.53193 -33.36698 -31.91368 -29.80528 -27.83818 -26.70823 -25.77864 -23.90022 -23.05876 -22.08457 -20.36396 -17.45682 -17.10512 -16.35932 -15.61126 -15.45052 -14.71774 -14.17942 -13.74819 -13.63498 -13.37647 -13.12089 -12.73413 -12.66805 -12.49303 -12.05725 -11.84074 -11.73729 -11.47333 -11.30249 -11.01634 -10.87946 -10.75063 -10.53700 -10.35823 -10.29720 -9.89627 -9.64168 -8.98012 -8.78675 -8.26693 -7.82215 -6.30055 -4.29961 3.11407 3.15682 3.19601 3.21718 3.67574 4.18651 4.29521 4.70832 4.92027 5.01728 5.39641 5.57185 5.60718 5.61635 5.74552 5.85196 5.91830 6.02025 6.02743 6.11212 6.17895 6.23755 6.32258 6.39143 6.40852 6.46348 6.54697 6.55951 6.64393 6.85571 7.22816 7.35329 7.40588 7.47240 8.05337 8.35252 8.74991 8.84158 9.27715 10.81781 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.011360 C = 0.008823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.285330 B = 2464.172571 C = 3172.609731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.581 5.581 5 C 0.200 3.800 6 C -0.536 4.536 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.885 5.885 10 Si 0.865 3.135 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.540 3.460 15 O -0.562 6.562 16 C -0.146 4.146 17 C -0.168 4.168 18 C 0.037 3.963 19 N -0.660 5.660 20 C 0.032 3.968 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.336 0.664 37 H 0.103 0.897 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 8.023 2.364 9.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.310 5.310 5 C 0.079 3.921 6 C -0.574 4.574 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.691 3.309 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.327 3.673 15 O -0.443 6.443 16 C -0.150 4.150 17 C -0.225 4.225 18 C -0.093 4.093 19 N -0.286 5.286 20 C -0.099 4.099 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.458 8.309 3.075 9.510 hybrid contribution 0.343 -0.589 -1.001 1.211 sum 3.801 7.720 2.074 8.851 Atomic orbital electron populations 1.22162 0.95305 1.02944 1.01716 1.20857 0.94631 0.92036 0.87949 1.22195 1.00348 0.96912 1.02994 1.47948 1.51026 1.27686 1.04352 1.20094 0.91261 0.83169 0.97617 1.21284 0.95453 0.89740 1.50881 0.90107 1.24879 0.97782 0.95752 0.94236 1.69880 1.35278 0.99176 1.47842 0.87017 0.86193 0.78653 0.79062 1.19490 1.20771 1.18794 1.19771 0.80808 0.82535 0.84144 1.90544 1.36850 1.30227 1.86631 1.23546 0.97325 0.99455 0.94669 1.22403 1.01445 0.92543 1.06151 1.23619 0.93003 0.96680 0.96002 1.65155 1.20775 1.05002 1.37708 1.23803 0.94065 0.94345 0.97648 0.90967 0.93048 0.92042 0.89683 0.93312 0.92292 0.90908 0.95277 0.94203 0.92220 0.92898 0.85519 0.93112 0.89919 0.88415 0.85019 0.87912 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.02 37.16 0.34 -2.58 16 2 C 0.15 2.67 3.27 -67.93 -0.22 2.44 16 3 C -0.17 -2.58 9.16 37.15 0.34 -2.24 16 4 N -0.58 -11.45 2.41 -167.47 -0.40 -11.85 16 5 C 0.20 4.22 3.52 -5.19 -0.02 4.21 16 6 C -0.54 -13.35 7.53 -34.44 -0.26 -13.60 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 8 C 0.08 2.01 5.40 -17.82 -0.10 1.91 16 9 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 10 Si 0.86 18.97 27.47 -169.99 -4.67 14.31 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 14 C 0.54 10.54 5.85 -10.99 -0.06 10.47 16 15 O -0.56 -11.64 12.20 5.55 0.07 -11.57 16 16 C -0.15 -2.56 0.72 -154.72 -0.11 -2.67 16 17 C -0.17 -3.15 8.62 37.16 0.32 -2.83 16 18 C 0.04 0.59 7.89 -2.76 -0.02 0.56 16 19 N -0.66 -10.16 8.57 -115.95 -0.99 -11.16 16 20 C 0.03 0.50 6.80 -2.64 -0.02 0.48 16 21 H 0.07 1.37 6.28 -51.93 -0.33 1.05 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.24 6.18 -51.93 -0.32 0.92 16 28 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 29 H 0.04 0.81 3.63 -51.93 -0.19 0.62 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.13 2.74 3.10 -51.93 -0.16 2.58 16 33 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.08 1.35 7.33 -51.93 -0.38 0.97 16 35 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.34 5.16 8.65 -39.29 -0.34 4.82 16 37 H 0.10 1.51 8.06 -51.93 -0.42 1.09 16 38 H 0.07 1.13 7.63 -51.93 -0.40 0.74 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -27.04 292.22 -6.49 -33.53 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.85 Total: 10.12 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.18 Total: -3.85 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.62 Total: -46.94 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.04 -6.49 -33.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399200269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.284 kcal (2) G-P(sol) polarization free energy of solvation -27.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds