Wall clock time and date at job start Mon Mar 30 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47124 * 2 1 4 4 N 1.46502 * 109.46942 * 119.99896 * 2 1 3 5 5 C 1.46504 * 120.00096 * 119.09890 * 4 2 1 6 6 C 1.50697 * 109.47086 * 276.31844 * 5 4 2 7 7 H 1.08000 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00056 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00069 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99735 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47317 * 90.00063 * 10 8 6 12 12 H 1.48504 * 109.46842 * 210.00261 * 10 8 6 13 13 H 1.48498 * 109.46944 * 329.99686 * 10 8 6 14 14 C 1.34777 * 119.99920 * 299.10261 * 4 2 1 15 15 O 1.21284 * 119.99906 * 5.21796 * 14 4 2 16 16 C 1.50700 * 120.00024 * 185.22577 * 14 4 2 17 17 C 1.53004 * 112.93435 * 299.12004 * 16 14 4 18 18 C 1.53936 * 113.73379 * 167.55683 * 16 14 4 19 19 N 1.47963 * 86.30111 * 269.19573 * 18 16 14 20 20 C 1.48189 * 90.67421 * 335.41054 * 19 18 16 21 21 H 1.09000 * 109.47463 * 306.36746 * 1 2 3 22 22 H 1.09000 * 109.47231 * 66.36396 * 1 2 3 23 23 H 1.09001 * 109.47323 * 186.35961 * 1 2 3 24 24 H 1.09003 * 109.46906 * 239.99744 * 2 1 3 25 25 H 1.09000 * 109.47088 * 184.14032 * 3 2 1 26 26 H 1.09004 * 109.46989 * 304.13555 * 3 2 1 27 27 H 1.08991 * 109.47729 * 64.13555 * 3 2 1 28 28 H 1.09000 * 109.47029 * 36.31754 * 5 4 2 29 29 H 1.08999 * 109.46956 * 156.31327 * 5 4 2 30 30 H 0.97003 * 119.99834 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.47169 * 295.16907 * 17 16 14 32 32 H 1.08997 * 109.47209 * 55.16601 * 17 16 14 33 33 H 1.09000 * 109.46892 * 175.16931 * 17 16 14 34 34 H 1.08999 * 113.75810 * 23.56779 * 18 16 14 35 35 H 1.08997 * 113.75892 * 154.82888 * 18 16 14 36 36 H 1.00903 * 110.99706 * 88.25609 * 19 18 16 37 37 H 1.08999 * 113.66005 * 270.26727 * 20 19 18 38 38 H 1.09003 * 113.92653 * 138.94818 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8442 -1.8932 1.0619 6 6 1.9547 -3.0949 0.8730 7 1 0.8815 -2.9750 0.8552 8 6 2.5109 -4.3477 0.7240 9 7 1.7347 -5.3964 0.5596 10 14 4.3671 -4.5554 0.7570 11 1 4.8136 -4.7956 2.1527 12 1 4.7508 -5.7121 -0.0916 13 1 5.0123 -3.3236 0.2358 14 6 1.7077 -0.2196 2.4202 15 8 0.9474 0.7185 2.5340 16 6 2.3050 -0.8586 3.6474 17 6 1.9290 -2.3344 3.7942 18 6 2.1042 -0.0372 4.9337 19 7 3.3991 0.6030 4.6128 20 6 3.8091 -0.5820 3.8230 21 1 -0.3634 0.6093 0.8275 22 1 -0.3634 0.4120 -0.9414 23 1 -0.3634 -1.0213 0.1138 24 1 1.8933 -0.5139 -0.8900 25 1 3.1274 1.4433 -0.0742 26 1 1.6174 1.9772 -0.8506 27 1 1.7385 1.9345 0.9246 28 1 3.5012 -1.7882 0.1986 29 1 3.4450 -2.0236 1.9620 30 1 2.1260 -6.2778 0.4551 31 1 0.8540 -2.4216 3.9517 32 1 2.2082 -2.8723 2.8882 33 1 2.4570 -2.7607 4.6472 34 1 1.2548 0.6446 4.8912 35 1 2.1241 -0.6356 5.8444 36 1 3.2673 1.4065 4.0169 37 1 4.3294 -1.3396 4.4091 38 1 4.3222 -0.3374 2.8929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399200269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:50 Heat of formation + Delta-G solvation = -16.397634 kcal Electronic energy + Delta-G solvation = -18957.684305 eV Core-core repulsion = 16221.751992 eV Total energy + Delta-G solvation = -2735.932313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12960 -39.36750 -37.13744 -35.09384 -33.60340 -31.23972 -29.64474 -28.06989 -27.02678 -25.37332 -24.62366 -23.70422 -21.76019 -19.05081 -18.96710 -17.75773 -17.12572 -16.89399 -16.35654 -15.81379 -15.13671 -15.07736 -14.80773 -14.63663 -14.42321 -14.09924 -14.01053 -13.41064 -13.36722 -13.17459 -12.91597 -12.78096 -12.57614 -12.52281 -12.26704 -11.97134 -11.86977 -11.82224 -11.60057 -11.31512 -10.75241 -10.47857 -9.56182 -9.42399 -8.28352 -6.32698 1.40946 1.43098 1.51195 1.62921 2.19900 2.35018 3.00292 3.07184 3.36758 3.50555 4.02618 4.18515 4.24457 4.31722 4.36440 4.57117 4.61369 4.67681 4.73323 4.74914 4.78432 4.87218 4.91665 4.96322 4.97981 4.98615 5.01709 5.09044 5.26538 5.35505 5.43404 5.71085 5.81503 6.19371 6.23238 6.63662 6.72540 7.22709 7.33952 8.87348 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.011360 C = 0.008823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.285330 B = 2464.172571 C = 3172.609731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 C -0.153 4.153 4 N -0.586 5.586 5 C 0.209 3.791 6 C -0.525 4.525 7 H 0.030 0.970 8 C 0.024 3.976 9 N -0.939 5.939 10 Si 0.928 3.072 11 H -0.255 1.255 12 H -0.289 1.289 13 H -0.238 1.238 14 C 0.534 3.466 15 O -0.577 6.577 16 C -0.156 4.156 17 C -0.162 4.162 18 C 0.045 3.955 19 N -0.653 5.653 20 C 0.039 3.961 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.335 0.665 37 H 0.120 0.880 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 9.279 2.817 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.316 5.316 5 C 0.087 3.913 6 C -0.563 4.563 7 H 0.048 0.952 8 C -0.176 4.176 9 N -0.578 5.578 10 Si 0.751 3.249 11 H -0.179 1.179 12 H -0.215 1.215 13 H -0.162 1.162 14 C 0.322 3.678 15 O -0.458 6.458 16 C -0.160 4.160 17 C -0.220 4.220 18 C -0.085 4.085 19 N -0.279 5.279 20 C -0.091 4.091 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.855 9.602 3.532 11.788 hybrid contribution -0.553 -0.961 -1.153 1.599 sum 5.302 8.641 2.379 10.413 Atomic orbital electron populations 1.22068 0.95768 1.00660 1.02724 1.21102 0.94372 0.93686 0.87451 1.22072 1.01078 0.94759 1.03197 1.48022 1.51031 1.27331 1.05186 1.19927 0.90760 0.82081 0.98549 1.21312 0.93578 0.91559 1.49897 0.95166 1.25705 1.02894 0.95138 0.93813 1.70044 1.37746 0.99852 1.50165 0.85999 0.79959 0.79220 0.79767 1.17918 1.21480 1.16159 1.20176 0.80543 0.82385 0.84660 1.90534 1.37393 1.31017 1.86901 1.23679 0.99188 0.98496 0.94652 1.22271 1.00602 0.93396 1.05700 1.23639 0.92919 0.96210 0.95711 1.65199 1.20261 1.04878 1.37524 1.23877 0.92408 0.94663 0.98188 0.92289 0.90140 0.95351 0.89568 0.92157 0.89851 0.92517 0.94317 0.92507 0.92308 0.94718 0.88291 0.90573 0.90908 0.86498 0.85045 0.86166 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 9.02 71.98 0.65 -4.91 16 2 C 0.14 4.79 3.27 44.99 0.15 4.93 16 3 C -0.15 -4.40 9.16 71.98 0.66 -3.74 16 4 N -0.59 -22.74 2.41 -802.14 -1.93 -24.67 16 5 C 0.21 8.57 3.52 85.63 0.30 8.87 16 6 C -0.53 -26.67 7.53 25.60 0.19 -26.48 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 8 C 0.02 1.24 5.40 84.66 0.46 1.70 16 9 N -0.94 -54.05 13.96 21.45 0.30 -53.76 16 10 Si 0.93 38.01 27.47 68.60 1.88 39.89 16 11 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.24 -8.75 6.54 99.48 0.65 -8.10 16 14 C 0.53 20.49 5.85 87.66 0.51 21.00 16 15 O -0.58 -23.73 12.20 -3.04 -0.04 -23.76 16 16 C -0.16 -5.21 0.72 -52.28 -0.04 -5.25 16 17 C -0.16 -5.94 8.62 71.98 0.62 -5.32 16 18 C 0.05 1.33 7.89 86.41 0.68 2.01 16 19 N -0.65 -18.25 8.57 -520.77 -4.46 -22.71 16 20 C 0.04 1.09 6.80 86.36 0.59 1.68 16 21 H 0.06 2.27 6.28 -2.39 -0.01 2.25 16 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 2.97 7.87 -2.39 -0.02 2.95 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.83 6.18 -2.39 -0.01 1.82 16 28 H 0.04 1.54 7.11 -2.39 -0.02 1.52 16 29 H 0.06 2.17 3.63 -2.39 -0.01 2.16 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 4.25 3.10 -2.39 -0.01 4.24 16 33 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 34 H 0.07 2.29 7.33 -2.39 -0.02 2.27 16 35 H 0.12 2.99 8.10 -2.39 -0.02 2.97 16 36 H 0.34 9.52 8.65 -89.69 -0.78 8.74 16 37 H 0.12 3.01 8.06 -2.39 -0.02 3.00 16 38 H 0.08 2.12 7.63 -2.39 -0.02 2.10 16 Total: -1.00 -59.69 292.22 0.75 -58.94 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.22 Total: 31.57 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.77 Total: -5.50 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -6.10 Total: -101.14 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.88 Total: 39.89 kcal Total: -59.69 0.75 -58.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399200269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.542 kcal (2) G-P(sol) polarization free energy of solvation -59.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds