Wall clock time and date at job start Mon Mar 30 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46829 * 2 1 4 4 N 1.46901 * 109.47455 * 120.00223 * 2 1 3 5 5 C 1.46900 * 110.99662 * 85.00266 * 4 2 1 6 6 C 1.50701 * 109.46803 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00320 * 5.36649 * 6 5 4 8 8 N 1.34775 * 119.99841 * 185.36503 * 6 5 4 9 9 C 1.46509 * 119.99904 * 185.07679 * 8 6 5 10 10 C 1.53001 * 109.47051 * 184.04304 * 9 8 6 11 11 C 1.50706 * 115.54743 * 294.92811 * 10 9 8 12 12 H 1.07994 * 120.00145 * 114.83054 * 11 10 9 13 13 C 1.37883 * 119.99934 * 294.55579 * 11 10 9 14 14 N 1.31504 * 120.00005 * 174.41913 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 354.41844 * 13 11 10 16 16 H 1.48496 * 109.47336 * 93.53073 * 15 13 11 17 17 H 1.48497 * 109.47115 * 213.53732 * 15 13 11 18 18 H 1.48508 * 109.47051 * 333.53272 * 15 13 11 19 19 C 1.52991 * 117.50198 * 80.59561 * 10 9 8 20 20 C 1.52998 * 117.49998 * 149.25932 * 10 9 8 21 21 H 1.08998 * 109.47715 * 59.99810 * 1 2 3 22 22 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46951 * 299.99413 * 1 2 3 24 24 H 1.09006 * 109.46951 * 240.00587 * 2 1 3 25 25 H 1.09009 * 109.46679 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47087 * 299.99994 * 3 2 1 27 27 H 1.08998 * 109.46989 * 60.00813 * 3 2 1 28 28 H 1.00902 * 110.99682 * 208.95222 * 4 2 1 29 29 H 1.08995 * 109.47730 * 59.99767 * 5 4 2 30 30 H 1.08998 * 109.47178 * 299.99617 * 5 4 2 31 31 H 0.96995 * 120.00199 * 5.08224 * 8 6 5 32 32 H 1.08995 * 109.46699 * 64.04477 * 9 8 6 33 33 H 1.08998 * 109.47218 * 304.03937 * 9 8 6 34 34 H 0.97007 * 120.00123 * 180.02562 * 14 13 11 35 35 H 1.09000 * 117.50591 * 215.00154 * 19 10 9 36 36 H 1.09005 * 117.50126 * 0.02722 * 19 10 9 37 37 H 1.08998 * 117.49584 * 359.97369 * 20 10 9 38 38 H 1.08996 * 117.49783 * 144.97298 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0826 -2.1438 0.9805 6 6 2.5875 -2.8187 2.2297 7 8 2.7748 -2.1691 3.2366 8 7 2.8309 -4.1443 2.2279 9 6 3.2146 -4.8203 3.4698 10 6 3.5286 -6.2885 3.1754 11 6 2.3645 -7.1196 2.7009 12 1 2.3661 -7.5309 1.7023 13 6 1.2999 -7.3596 3.5436 14 7 0.2363 -7.9904 3.0962 15 14 1.3684 -6.7886 5.3209 16 1 0.7392 -5.4483 5.4349 17 1 0.6361 -7.7539 6.1795 18 1 2.7844 -6.7097 5.7612 19 6 4.9093 -6.6145 2.6025 20 6 4.5769 -6.9764 4.0522 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.9174 -0.3306 1.4846 29 1 2.7588 -2.3575 0.1529 30 1 1.0872 -2.5187 0.7424 31 1 2.7521 -4.6508 1.4045 32 1 2.3938 -4.7605 4.1845 33 1 4.0972 -4.3370 3.8888 34 1 -0.5129 -8.1590 3.6889 35 1 4.9758 -7.4301 1.8825 36 1 5.5942 -5.7830 2.4358 37 1 5.0430 -6.3828 4.8386 38 1 4.4243 -8.0299 4.2862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404091521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:10 Heat of formation + Delta-G solvation = -20.119030 kcal Electronic energy + Delta-G solvation = -17379.197961 eV Core-core repulsion = 14643.104276 eV Total energy + Delta-G solvation = -2736.093685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.28578 -37.32567 -36.61436 -33.36225 -32.19708 -31.64788 -27.60781 -27.23924 -25.76145 -24.28500 -21.65634 -20.62887 -19.85447 -19.17036 -17.03052 -16.35439 -15.88267 -15.59677 -15.13763 -14.59267 -14.31463 -14.22489 -13.55503 -13.17286 -12.80795 -12.59649 -12.49422 -12.28279 -12.18679 -11.87965 -11.75805 -11.30875 -11.08052 -10.93282 -10.71701 -10.61352 -10.27470 -9.63941 -9.33791 -9.15093 -8.79917 -8.52161 -8.43897 -8.25472 -6.18960 -4.22009 3.12584 3.29141 3.39031 3.44464 3.56733 4.28568 4.38554 4.81308 4.83616 4.94300 5.17976 5.20636 5.27446 5.35528 5.52852 5.58792 5.67296 5.71385 5.74584 5.79727 5.96075 6.02246 6.12133 6.22891 6.24037 6.42780 6.50667 6.69675 6.92981 6.94448 7.05425 7.17533 7.36884 7.65822 8.20105 8.39438 8.79508 8.82457 9.44782 10.91959 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.005749 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480673 B = 4868.869983 C = 5218.749321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 C -0.153 4.153 4 N -0.669 5.669 5 C 0.041 3.959 6 C 0.504 3.496 7 O -0.545 6.545 8 N -0.703 5.703 9 C 0.155 3.845 10 C -0.018 4.018 11 C -0.491 4.491 12 H 0.078 0.922 13 C 0.084 3.916 14 N -0.893 5.893 15 Si 0.865 3.135 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.249 1.249 19 C -0.180 4.180 20 C -0.185 4.185 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.348 0.652 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.406 0.594 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 12.398 -6.466 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.211 4.211 4 N -0.303 5.303 5 C -0.091 4.091 6 C 0.289 3.711 7 O -0.423 6.423 8 N -0.354 5.354 9 C 0.031 3.969 10 C -0.019 4.019 11 C -0.528 4.528 12 H 0.096 0.904 13 C -0.120 4.120 14 N -0.529 5.529 15 Si 0.693 3.307 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.172 1.172 19 C -0.218 4.218 20 C -0.223 4.223 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.241 0.759 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.560 12.749 -5.387 14.290 hybrid contribution 0.543 -0.232 0.030 0.592 sum 4.103 12.516 -5.356 14.219 Atomic orbital electron populations 1.21815 0.94458 1.02116 1.01582 1.21540 0.96320 0.94241 0.91065 1.21962 1.00743 0.95817 1.02574 1.60173 1.34524 1.01850 1.33706 1.21860 1.02582 0.89478 0.95175 1.20458 0.78123 0.82536 0.90008 1.90657 1.52378 1.64514 1.34732 1.45836 1.68691 1.07558 1.13315 1.21055 0.98373 0.91981 0.85445 1.19621 0.90137 0.91502 1.00672 1.20223 0.99854 1.31380 1.01300 0.90433 1.24906 0.94662 0.93958 0.98440 1.69887 1.05648 1.41186 1.36159 0.87039 0.79826 0.78412 0.85441 1.20354 1.21795 1.17214 1.22795 0.99840 1.02336 0.96795 1.23027 1.05698 1.01191 0.92383 0.92729 0.92618 0.91888 0.93907 0.92801 0.91949 0.91595 0.83234 0.92707 0.87925 0.75938 0.92576 0.93337 0.92441 0.89629 0.90963 0.91117 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.41 37.16 0.35 -1.13 16 2 C 0.08 0.82 3.22 -67.71 -0.22 0.60 16 3 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 4 N -0.67 -8.96 5.90 -107.99 -0.64 -9.60 16 5 C 0.04 0.58 5.97 -4.98 -0.03 0.55 16 6 C 0.50 9.24 7.84 -10.99 -0.09 9.15 16 7 O -0.54 -11.91 16.27 5.55 0.09 -11.82 16 8 N -0.70 -13.34 5.48 -60.29 -0.33 -13.67 16 9 C 0.16 3.33 5.15 -4.04 -0.02 3.31 16 10 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 11 C -0.49 -12.78 9.16 -34.44 -0.32 -13.09 16 12 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 13 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 14 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 15 Si 0.87 21.32 24.97 -169.99 -4.24 17.07 16 16 H -0.28 -7.02 7.03 56.52 0.40 -6.62 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.25 -5.76 5.72 56.52 0.32 -5.43 16 19 C -0.18 -3.43 9.96 -26.70 -0.27 -3.70 16 20 C -0.18 -3.76 8.03 -26.69 -0.21 -3.98 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 25 H 0.05 0.44 8.12 -51.92 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.35 4.62 8.13 -39.29 -0.32 4.31 16 29 H 0.06 0.63 8.05 -51.93 -0.42 0.22 16 30 H 0.10 1.40 7.44 -51.93 -0.39 1.01 16 31 H 0.41 7.11 8.34 -40.82 -0.34 6.77 16 32 H 0.06 1.35 5.06 -51.93 -0.26 1.08 16 33 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -30.50 310.63 -6.74 -37.24 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.38 Total: 9.12 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.69 Total: -7.59 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.19 Total: -48.69 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.24 Total: 17.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.50 -6.74 -37.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404091521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.118 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds