Wall clock time and date at job start Mon Mar 30 2020 03:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46829 * 2 1 4 4 N 1.46901 * 109.47455 * 120.00223 * 2 1 3 5 5 C 1.46900 * 110.99662 * 85.00266 * 4 2 1 6 6 C 1.50701 * 109.46803 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00320 * 5.36649 * 6 5 4 8 8 N 1.34775 * 119.99841 * 185.36503 * 6 5 4 9 9 C 1.46509 * 119.99904 * 185.07679 * 8 6 5 10 10 C 1.53001 * 109.47051 * 184.04304 * 9 8 6 11 11 C 1.50706 * 115.54743 * 294.92811 * 10 9 8 12 12 H 1.07994 * 120.00145 * 114.83054 * 11 10 9 13 13 C 1.37883 * 119.99934 * 294.55579 * 11 10 9 14 14 N 1.31504 * 120.00005 * 174.41913 * 13 11 10 15 15 Si 1.86802 * 119.99953 * 354.41844 * 13 11 10 16 16 H 1.48496 * 109.47336 * 93.53073 * 15 13 11 17 17 H 1.48497 * 109.47115 * 213.53732 * 15 13 11 18 18 H 1.48508 * 109.47051 * 333.53272 * 15 13 11 19 19 C 1.52991 * 117.50198 * 80.59561 * 10 9 8 20 20 C 1.52998 * 117.49998 * 149.25932 * 10 9 8 21 21 H 1.08998 * 109.47715 * 59.99810 * 1 2 3 22 22 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46951 * 299.99413 * 1 2 3 24 24 H 1.09006 * 109.46951 * 240.00587 * 2 1 3 25 25 H 1.09009 * 109.46679 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47087 * 299.99994 * 3 2 1 27 27 H 1.08998 * 109.46989 * 60.00813 * 3 2 1 28 28 H 1.00902 * 110.99682 * 208.95222 * 4 2 1 29 29 H 1.08995 * 109.47730 * 59.99767 * 5 4 2 30 30 H 1.08998 * 109.47178 * 299.99617 * 5 4 2 31 31 H 0.96995 * 120.00199 * 5.08224 * 8 6 5 32 32 H 1.08995 * 109.46699 * 64.04477 * 9 8 6 33 33 H 1.08998 * 109.47218 * 304.03937 * 9 8 6 34 34 H 0.97007 * 120.00123 * 180.02562 * 14 13 11 35 35 H 1.09000 * 117.50591 * 215.00154 * 19 10 9 36 36 H 1.09005 * 117.50126 * 0.02722 * 19 10 9 37 37 H 1.08998 * 117.49584 * 359.97369 * 20 10 9 38 38 H 1.08996 * 117.49783 * 144.97298 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0826 -2.1438 0.9805 6 6 2.5875 -2.8187 2.2297 7 8 2.7748 -2.1691 3.2366 8 7 2.8309 -4.1443 2.2279 9 6 3.2146 -4.8203 3.4698 10 6 3.5286 -6.2885 3.1754 11 6 2.3645 -7.1196 2.7009 12 1 2.3661 -7.5309 1.7023 13 6 1.2999 -7.3596 3.5436 14 7 0.2363 -7.9904 3.0962 15 14 1.3684 -6.7886 5.3209 16 1 0.7392 -5.4483 5.4349 17 1 0.6361 -7.7539 6.1795 18 1 2.7844 -6.7097 5.7612 19 6 4.9093 -6.6145 2.6025 20 6 4.5769 -6.9764 4.0522 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.9174 -0.3306 1.4846 29 1 2.7588 -2.3575 0.1529 30 1 1.0872 -2.5187 0.7424 31 1 2.7521 -4.6508 1.4045 32 1 2.3938 -4.7605 4.1845 33 1 4.0972 -4.3370 3.8888 34 1 -0.5129 -8.1590 3.6889 35 1 4.9758 -7.4301 1.8825 36 1 5.5942 -5.7830 2.4358 37 1 5.0430 -6.3828 4.8386 38 1 4.4243 -8.0299 4.2862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404091521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:10 Heat of formation + Delta-G solvation = -42.766948 kcal Electronic energy + Delta-G solvation = -17380.180048 eV Core-core repulsion = 14643.104276 eV Total energy + Delta-G solvation = -2737.075772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75247 -38.81525 -37.76958 -34.94322 -34.27336 -32.64038 -29.01684 -28.14273 -27.53606 -25.71326 -23.24393 -21.49190 -21.36236 -20.91981 -18.71077 -17.84918 -17.15362 -16.95930 -16.84407 -15.92826 -15.72880 -15.24729 -15.02400 -14.88998 -14.52896 -14.02946 -13.91405 -13.41307 -13.29935 -13.02438 -12.90746 -12.67135 -12.62074 -12.19582 -12.09858 -12.07851 -11.76382 -11.48462 -11.03700 -10.87450 -10.69997 -10.32048 -9.90132 -9.38918 -8.32042 -6.35491 1.31017 1.37853 1.47248 1.69070 2.21514 2.34114 2.98497 3.24133 3.37557 3.88212 4.02818 4.03371 4.18589 4.29968 4.35385 4.44667 4.46832 4.50154 4.53104 4.80991 4.83874 4.91603 4.94567 4.98233 5.01077 5.07931 5.27099 5.31167 5.41703 5.50371 5.58903 5.68853 6.01493 6.29126 6.39154 6.68764 6.77596 7.32952 7.34845 8.82192 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.005749 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480673 B = 4868.869983 C = 5218.749321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 C -0.149 4.149 4 N -0.687 5.687 5 C 0.051 3.949 6 C 0.501 3.499 7 O -0.582 6.582 8 N -0.703 5.703 9 C 0.161 3.839 10 C -0.044 4.044 11 C -0.475 4.475 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.939 5.939 15 Si 0.913 3.087 16 H -0.291 1.291 17 H -0.295 1.295 18 H -0.223 1.223 19 C -0.153 4.153 20 C -0.183 4.183 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.347 0.653 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.412 0.588 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.264 0.736 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 13.625 -7.124 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.321 5.321 5 C -0.081 4.081 6 C 0.288 3.712 7 O -0.463 6.463 8 N -0.354 5.354 9 C 0.037 3.963 10 C -0.045 4.045 11 C -0.512 4.512 12 H 0.065 0.935 13 C -0.164 4.164 14 N -0.579 5.579 15 Si 0.740 3.260 16 H -0.218 1.218 17 H -0.222 1.222 18 H -0.145 1.145 19 C -0.190 4.190 20 C -0.221 4.221 21 H 0.094 0.906 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.167 0.833 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.248 0.752 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.264 13.975 -6.067 16.119 hybrid contribution 0.044 -0.602 0.152 0.622 sum 5.308 13.373 -5.915 15.557 Atomic orbital electron populations 1.21830 0.94621 1.01510 1.02007 1.21648 0.96141 0.95113 0.90340 1.21931 1.01119 0.94598 1.02986 1.60179 1.34718 1.01587 1.35625 1.21803 1.03099 0.89651 0.93527 1.21223 0.76948 0.82033 0.90951 1.90634 1.53915 1.65190 1.36523 1.45845 1.68747 1.07988 1.12837 1.20838 0.97708 0.91771 0.85988 1.19462 0.90103 0.91290 1.03623 1.20371 1.00865 1.30281 0.99707 0.93452 1.25538 0.94662 0.94521 1.01632 1.70000 1.06684 1.43813 1.37362 0.86279 0.80936 0.76859 0.81935 1.21837 1.22223 1.14541 1.22841 0.97428 1.02820 0.95870 1.23077 1.04325 1.00871 0.93843 0.90595 0.93721 0.93200 0.92592 0.92196 0.90151 0.92549 0.83302 0.89604 0.87611 0.75177 0.95441 0.92218 0.92671 0.89498 0.88190 0.89042 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.41 71.98 0.68 -2.06 16 2 C 0.08 1.44 3.22 44.92 0.14 1.59 16 3 C -0.15 -2.26 9.18 71.98 0.66 -1.60 16 4 N -0.69 -17.35 5.90 -495.57 -2.92 -20.28 16 5 C 0.05 1.33 5.97 85.56 0.51 1.84 16 6 C 0.50 17.80 7.84 87.66 0.69 18.49 16 7 O -0.58 -25.09 16.27 -3.04 -0.05 -25.14 16 8 N -0.70 -25.77 5.48 -463.05 -2.54 -28.30 16 9 C 0.16 6.69 5.15 86.38 0.44 7.13 16 10 C -0.04 -1.84 0.84 -52.93 -0.04 -1.89 16 11 C -0.47 -24.72 9.16 25.60 0.23 -24.48 16 12 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 13 C 0.04 1.96 5.47 84.66 0.46 2.43 16 14 N -0.94 -56.47 13.96 21.45 0.30 -56.17 16 15 Si 0.91 44.21 24.97 68.60 1.71 45.93 16 16 H -0.29 -14.67 7.03 99.48 0.70 -13.97 16 17 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 18 H -0.22 -9.74 5.72 99.48 0.57 -9.17 16 19 C -0.15 -5.31 9.96 30.62 0.30 -5.01 16 20 C -0.18 -6.91 8.03 30.62 0.25 -6.66 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.04 0.94 7.45 -2.39 -0.02 0.92 16 23 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 0.93 7.80 -2.38 -0.02 0.91 16 25 H 0.06 0.84 8.12 -2.38 -0.02 0.82 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.35 8.74 8.13 -89.69 -0.73 8.01 16 29 H 0.09 1.72 8.05 -2.39 -0.02 1.70 16 30 H 0.11 2.72 7.44 -2.39 -0.02 2.70 16 31 H 0.41 13.90 8.34 -92.71 -0.77 13.12 16 32 H 0.03 1.30 5.06 -2.39 -0.01 1.29 16 33 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 34 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -66.04 310.63 0.23 -65.81 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.60 Total: 28.36 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.33 Total: -10.21 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -5.16 Total: -104.75 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.71 Total: 45.93 kcal Total: -66.04 0.23 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404091521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.041 kcal (2) G-P(sol) polarization free energy of solvation -66.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds