Wall clock time and date at job start Mon Mar 30 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 N 1.46900 * 109.47541 * 120.00445 * 2 1 3 5 5 C 1.46901 * 110.99744 * 313.04953 * 4 2 1 6 6 C 1.50697 * 109.47373 * 282.73845 * 5 4 2 7 7 H 1.07999 * 120.00097 * 359.71345 * 6 5 4 8 8 C 1.37871 * 119.99930 * 179.70817 * 6 5 4 9 9 N 1.31517 * 120.00091 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47268 * 269.99867 * 10 8 6 12 12 H 1.48504 * 109.47023 * 29.99973 * 10 8 6 13 13 H 1.48501 * 109.47435 * 149.99919 * 10 8 6 14 14 C 1.46894 * 111.00038 * 77.00662 * 4 2 1 15 15 H 1.09001 * 109.40116 * 314.55373 * 14 4 2 16 16 C 1.53067 * 109.40072 * 194.72994 * 14 4 2 17 17 C 1.53342 * 108.42646 * 190.97072 * 16 14 4 18 18 C 1.52926 * 108.67595 * 67.53016 * 17 16 14 19 19 N 1.45753 * 110.48475 * 309.24863 * 18 17 16 20 20 C 1.33355 * 124.10944 * 19.07378 * 19 18 17 21 21 O 1.21276 * 118.24892 * 177.77780 * 20 19 18 22 22 H 1.09003 * 109.47117 * 299.99194 * 1 2 3 23 23 H 1.08994 * 109.47715 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47117 * 240.00806 * 2 1 3 26 26 H 1.08998 * 109.46737 * 167.39982 * 3 2 1 27 27 H 1.08995 * 109.47410 * 287.39772 * 3 2 1 28 28 H 1.08997 * 109.46841 * 47.40161 * 3 2 1 29 29 H 1.08996 * 109.46916 * 162.73745 * 5 4 2 30 30 H 1.09006 * 109.47024 * 42.73903 * 5 4 2 31 31 H 0.97000 * 120.00242 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.67334 * 310.70687 * 16 14 4 33 33 H 1.09000 * 109.67569 * 71.23326 * 16 14 4 34 34 H 1.09007 * 109.60560 * 187.28277 * 17 16 14 35 35 H 1.08994 * 109.60485 * 307.61089 * 17 16 14 36 36 H 1.08999 * 109.29999 * 69.55641 * 18 17 16 37 37 H 1.08997 * 109.30038 * 188.93539 * 18 17 16 38 38 H 0.96996 * 117.94695 * 199.07357 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3126 -0.2289 2.4006 6 6 1.8558 1.1138 2.8164 7 1 2.6503 1.5745 2.2482 8 6 1.3383 1.7544 3.9222 9 7 1.8119 2.9265 4.2849 10 14 -0.0356 0.9575 4.9055 11 1 -1.3482 1.3806 4.3548 12 1 0.0852 -0.5200 4.8172 13 1 0.0639 1.3782 6.3261 14 6 1.9046 -2.1493 1.0500 15 1 0.9238 -2.3951 0.6427 16 6 2.0682 -2.8153 2.4184 17 6 2.2207 -4.3264 2.2069 18 6 3.5532 -4.5905 1.5047 19 7 3.6829 -3.7473 0.3229 20 6 2.9697 -2.6404 0.1121 21 8 3.1932 -1.9958 -0.8906 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1066 1.4508 0.2242 27 1 1.8714 1.8876 -0.9806 28 1 1.5052 2.0169 0.7565 29 1 1.4594 -0.9461 3.2081 30 1 0.2482 -0.1389 2.1836 31 1 1.4481 3.3769 5.0631 32 1 2.9561 -2.4226 2.9139 33 1 1.1882 -2.6174 3.0304 34 1 2.2090 -4.8338 3.1717 35 1 1.4005 -4.6940 1.5904 36 1 4.3715 -4.3757 2.1920 37 1 3.6023 -5.6379 1.2071 38 1 4.3285 -4.0077 -0.3527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685976714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:36 Heat of formation + Delta-G solvation = -18.657160 kcal Electronic energy + Delta-G solvation = -18691.294508 eV Core-core repulsion = 15955.264215 eV Total energy + Delta-G solvation = -2736.030293 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30105 -37.36253 -36.25204 -32.75033 -32.41452 -30.46211 -28.71088 -26.81256 -26.41581 -23.81034 -22.56372 -21.32287 -19.13499 -18.50753 -17.20657 -16.74450 -15.90227 -15.56438 -14.91844 -14.26334 -14.21214 -13.86149 -13.61234 -13.25676 -13.14093 -12.65330 -12.18263 -11.90499 -11.60645 -11.51750 -11.15256 -11.10916 -10.86787 -10.81527 -10.56123 -10.40641 -10.13299 -9.95696 -9.69267 -9.09713 -8.92064 -8.83682 -8.46588 -7.27198 -5.98582 -3.92547 2.96377 3.27789 3.35087 3.36462 3.45723 4.44521 4.59796 4.77284 4.79623 5.04427 5.09773 5.31647 5.40636 5.51736 5.61975 5.78918 5.81555 5.86704 5.97033 6.12276 6.16176 6.37020 6.49286 6.58198 6.64000 6.76996 6.94406 6.97674 7.01759 7.24807 7.46962 7.52543 7.72254 8.00091 8.14035 8.54298 8.74156 9.15304 9.62918 11.14089 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.009182 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.410452 B = 3048.749350 C = 3674.182592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.076 3.924 3 C -0.133 4.133 4 N -0.503 5.503 5 C 0.142 3.858 6 C -0.498 4.498 7 H 0.091 0.909 8 C 0.066 3.934 9 N -0.902 5.902 10 Si 0.868 3.132 11 H -0.279 1.279 12 H -0.269 1.269 13 H -0.287 1.287 14 C 0.069 3.931 15 H 0.064 0.936 16 C -0.123 4.123 17 C -0.136 4.136 18 C 0.113 3.887 19 N -0.725 5.725 20 C 0.533 3.467 21 O -0.543 6.543 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.000 1.000 31 H 0.262 0.738 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -15.339 -4.445 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.032 4.032 3 C -0.190 4.190 4 N -0.228 5.228 5 C 0.016 3.984 6 C -0.537 4.537 7 H 0.109 0.891 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.696 3.304 11 H -0.205 1.205 12 H -0.194 1.194 13 H -0.213 1.213 14 C -0.043 4.043 15 H 0.082 0.918 16 C -0.160 4.160 17 C -0.175 4.175 18 C -0.011 4.011 19 N -0.379 5.379 20 C 0.319 3.681 21 O -0.419 6.419 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.077 -14.659 -4.592 15.362 hybrid contribution -1.392 -0.738 0.433 1.634 sum -1.469 -15.397 -4.160 16.017 Atomic orbital electron populations 1.22509 0.99244 1.00222 1.02411 1.21849 0.91372 0.96538 0.93419 1.21923 1.02197 0.95031 0.99855 1.62140 1.57676 0.98760 1.04216 1.20625 0.92576 0.97524 0.87648 1.21225 1.20283 1.00881 1.11265 0.89108 1.24886 0.96624 0.94856 0.97113 1.69886 1.42843 1.14739 1.26683 0.86981 0.83303 0.80203 0.79947 1.20497 1.19359 1.21346 1.21401 0.95403 0.92908 0.94555 0.91849 1.21915 1.04448 0.93147 0.96535 1.21916 0.96753 0.97564 1.01239 1.21323 0.98413 0.93950 0.87436 1.45476 1.42301 1.26571 1.23505 1.20265 0.81993 0.79200 0.86604 1.90626 1.67829 1.53947 1.29524 0.90880 0.93101 0.94400 0.88992 0.92554 0.95131 0.89873 0.94799 0.98208 0.92836 0.89583 0.90202 0.89807 0.91343 0.91726 0.91101 0.77105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.48 8.33 37.16 0.31 -3.17 16 2 C 0.08 1.58 2.60 -67.71 -0.18 1.41 16 3 C -0.13 -2.89 7.83 37.16 0.29 -2.60 16 4 N -0.50 -10.73 4.23 -221.79 -0.94 -11.66 16 5 C 0.14 3.30 3.19 -4.98 -0.02 3.28 16 6 C -0.50 -13.69 7.72 -34.44 -0.27 -13.96 16 7 H 0.09 2.74 6.03 -52.49 -0.32 2.43 16 8 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 9 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 10 Si 0.87 20.95 27.46 -169.99 -4.67 16.28 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.10 6.55 56.52 0.37 -5.73 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 C 0.07 1.21 2.23 -69.09 -0.15 1.06 16 15 H 0.06 1.08 6.63 -51.93 -0.34 0.73 16 16 C -0.12 -1.83 3.99 -26.52 -0.11 -1.94 16 17 C -0.14 -1.41 6.02 -26.59 -0.16 -1.57 16 18 C 0.11 1.08 7.17 -4.48 -0.03 1.05 16 19 N -0.73 -9.25 5.45 -61.39 -0.33 -9.59 16 20 C 0.53 9.14 7.44 -11.87 -0.09 9.05 16 21 O -0.54 -11.12 14.84 5.56 0.08 -11.04 16 22 H 0.07 1.50 5.96 -51.93 -0.31 1.19 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.65 6.83 -51.93 -0.35 0.29 16 25 H 0.09 1.95 5.41 -51.93 -0.28 1.67 16 26 H 0.06 1.31 7.71 -51.93 -0.40 0.90 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 2.01 6.03 -51.93 -0.31 1.70 16 29 H 0.03 0.78 4.19 -51.93 -0.22 0.56 16 30 H 0.00 0.01 4.58 -51.93 -0.24 -0.23 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.08 1.23 6.73 -51.93 -0.35 0.89 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 4.41 8.80 -40.82 -0.36 4.05 16 LS Contribution 282.78 15.07 4.26 4.26 Total: -1.00 -31.87 282.78 -6.92 -38.79 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.60 Total: 5.08 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.50 Total: -5.62 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.50 Total: -47.75 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.87 -6.92 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685976714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.135 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds