Wall clock time and date at job start Mon Mar 30 2020 03:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 N 1.46900 * 109.47541 * 120.00445 * 2 1 3 5 5 C 1.46901 * 110.99744 * 313.04953 * 4 2 1 6 6 C 1.50697 * 109.47373 * 282.73845 * 5 4 2 7 7 H 1.07999 * 120.00097 * 359.71345 * 6 5 4 8 8 C 1.37871 * 119.99930 * 179.70817 * 6 5 4 9 9 N 1.31517 * 120.00091 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47268 * 269.99867 * 10 8 6 12 12 H 1.48504 * 109.47023 * 29.99973 * 10 8 6 13 13 H 1.48501 * 109.47435 * 149.99919 * 10 8 6 14 14 C 1.46894 * 111.00038 * 77.00662 * 4 2 1 15 15 H 1.09001 * 109.40116 * 314.55373 * 14 4 2 16 16 C 1.53067 * 109.40072 * 194.72994 * 14 4 2 17 17 C 1.53342 * 108.42646 * 190.97072 * 16 14 4 18 18 C 1.52926 * 108.67595 * 67.53016 * 17 16 14 19 19 N 1.45753 * 110.48475 * 309.24863 * 18 17 16 20 20 C 1.33355 * 124.10944 * 19.07378 * 19 18 17 21 21 O 1.21276 * 118.24892 * 177.77780 * 20 19 18 22 22 H 1.09003 * 109.47117 * 299.99194 * 1 2 3 23 23 H 1.08994 * 109.47715 * 59.99933 * 1 2 3 24 24 H 1.09000 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47117 * 240.00806 * 2 1 3 26 26 H 1.08998 * 109.46737 * 167.39982 * 3 2 1 27 27 H 1.08995 * 109.47410 * 287.39772 * 3 2 1 28 28 H 1.08997 * 109.46841 * 47.40161 * 3 2 1 29 29 H 1.08996 * 109.46916 * 162.73745 * 5 4 2 30 30 H 1.09006 * 109.47024 * 42.73903 * 5 4 2 31 31 H 0.97000 * 120.00242 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.67334 * 310.70687 * 16 14 4 33 33 H 1.09000 * 109.67569 * 71.23326 * 16 14 4 34 34 H 1.09007 * 109.60560 * 187.28277 * 17 16 14 35 35 H 1.08994 * 109.60485 * 307.61089 * 17 16 14 36 36 H 1.08999 * 109.29999 * 69.55641 * 18 17 16 37 37 H 1.08997 * 109.30038 * 188.93539 * 18 17 16 38 38 H 0.96996 * 117.94695 * 199.07357 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3126 -0.2289 2.4006 6 6 1.8558 1.1138 2.8164 7 1 2.6503 1.5745 2.2482 8 6 1.3383 1.7544 3.9222 9 7 1.8119 2.9265 4.2849 10 14 -0.0356 0.9575 4.9055 11 1 -1.3482 1.3806 4.3548 12 1 0.0852 -0.5200 4.8172 13 1 0.0639 1.3782 6.3261 14 6 1.9046 -2.1493 1.0500 15 1 0.9238 -2.3951 0.6427 16 6 2.0682 -2.8153 2.4184 17 6 2.2207 -4.3264 2.2069 18 6 3.5532 -4.5905 1.5047 19 7 3.6829 -3.7473 0.3229 20 6 2.9697 -2.6404 0.1121 21 8 3.1932 -1.9958 -0.8906 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1066 1.4508 0.2242 27 1 1.8714 1.8876 -0.9806 28 1 1.5052 2.0169 0.7565 29 1 1.4594 -0.9461 3.2081 30 1 0.2482 -0.1389 2.1836 31 1 1.4481 3.3769 5.0631 32 1 2.9561 -2.4226 2.9139 33 1 1.1882 -2.6174 3.0304 34 1 2.2090 -4.8338 3.1717 35 1 1.4005 -4.6940 1.5904 36 1 4.3715 -4.3757 2.1920 37 1 3.6023 -5.6379 1.2071 38 1 4.3285 -4.0077 -0.3527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685976714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:35 Heat of formation + Delta-G solvation = -43.366992 kcal Electronic energy + Delta-G solvation = -18692.366007 eV Core-core repulsion = 15955.264215 eV Total energy + Delta-G solvation = -2737.101792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60022 -38.92097 -37.40721 -34.61389 -33.98345 -31.80518 -30.43012 -28.29133 -28.03874 -25.33904 -23.69893 -22.96833 -20.63841 -19.83525 -18.91637 -18.22668 -17.28414 -17.02531 -16.24554 -15.98528 -15.70795 -15.11190 -14.95640 -14.74145 -14.59945 -14.26767 -13.75576 -13.42781 -13.09193 -12.89883 -12.82373 -12.65717 -12.41103 -12.33219 -11.98925 -11.93912 -11.77727 -11.65281 -11.29645 -11.07071 -10.66973 -10.35223 -9.96431 -8.90451 -8.15969 -6.14776 1.37937 1.38704 1.48791 1.64921 2.38235 2.41347 3.15690 3.23279 3.68474 3.83500 3.94042 4.08099 4.20803 4.27089 4.35109 4.57878 4.60698 4.75124 4.79398 4.86492 4.89042 4.95048 5.01127 5.06771 5.12446 5.18865 5.20969 5.36155 5.50503 5.63759 5.70269 5.97008 6.10631 6.37428 6.48303 6.76901 6.91629 7.32351 7.44670 9.00185 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.009182 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.410452 B = 3048.749350 C = 3674.182592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 C -0.122 4.122 4 N -0.526 5.526 5 C 0.154 3.846 6 C -0.497 4.497 7 H 0.047 0.953 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.937 3.063 11 H -0.273 1.273 12 H -0.240 1.240 13 H -0.288 1.288 14 C 0.066 3.934 15 H 0.074 0.926 16 C -0.123 4.123 17 C -0.128 4.128 18 C 0.106 3.894 19 N -0.711 5.711 20 C 0.527 3.473 21 O -0.587 6.587 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.006 0.994 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -18.931 -4.181 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 C -0.180 4.180 4 N -0.251 5.251 5 C 0.028 3.972 6 C -0.536 4.536 7 H 0.065 0.935 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.761 3.239 11 H -0.199 1.199 12 H -0.163 1.163 13 H -0.214 1.214 14 C -0.046 4.046 15 H 0.091 0.909 16 C -0.161 4.161 17 C -0.166 4.166 18 C -0.017 4.017 19 N -0.363 5.363 20 C 0.313 3.687 21 O -0.468 6.468 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.314 -18.322 -4.325 18.871 hybrid contribution -0.877 0.377 0.280 0.995 sum -2.191 -17.944 -4.045 18.525 Atomic orbital electron populations 1.22386 0.97369 1.01454 1.02272 1.21815 0.92850 0.95195 0.93309 1.21782 0.99927 0.96315 0.99986 1.61940 1.57968 1.01578 1.03611 1.20387 0.92577 0.95292 0.88973 1.21440 1.18871 1.02679 1.10572 0.93524 1.25772 0.99599 0.95333 0.98515 1.70065 1.45095 1.16812 1.27645 0.85868 0.79557 0.80753 0.77738 1.19885 1.16274 1.21441 1.21532 0.96206 0.90360 0.96495 0.90858 1.21902 1.03246 0.96415 0.94509 1.21925 0.97513 0.93912 1.03206 1.21664 0.98340 0.95390 0.86275 1.45432 1.40948 1.25331 1.24569 1.20245 0.82398 0.80072 0.85951 1.90603 1.69276 1.55713 1.31160 0.92902 0.91287 0.92409 0.89035 0.95286 0.92797 0.92953 0.93626 0.97607 0.92923 0.91668 0.90576 0.86918 0.90125 0.91005 0.86971 0.76044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.39 8.33 71.98 0.60 -5.79 16 2 C 0.08 3.18 2.60 44.92 0.12 3.29 16 3 C -0.12 -5.57 7.83 71.98 0.56 -5.00 16 4 N -0.53 -22.44 4.23 -855.62 -3.62 -26.05 16 5 C 0.15 7.10 3.19 85.56 0.27 7.37 16 6 C -0.50 -28.23 7.72 25.60 0.20 -28.03 16 7 H 0.05 3.00 6.03 -2.91 -0.02 2.98 16 8 C 0.00 0.21 5.47 84.65 0.46 0.67 16 9 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 10 Si 0.94 43.01 27.46 68.60 1.88 44.89 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.24 -9.77 6.55 99.48 0.65 -9.12 16 13 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 14 C 0.07 2.19 2.23 44.03 0.10 2.28 16 15 H 0.07 2.30 6.63 -2.39 -0.02 2.28 16 16 C -0.12 -3.35 3.99 30.73 0.12 -3.22 16 17 C -0.13 -2.06 6.02 30.68 0.18 -1.88 16 18 C 0.11 1.56 7.17 86.50 0.62 2.18 16 19 N -0.71 -16.18 5.45 -467.31 -2.55 -18.73 16 20 C 0.53 17.33 7.44 87.71 0.65 17.98 16 21 O -0.59 -23.91 14.84 -3.02 -0.04 -23.96 16 22 H 0.05 2.13 5.96 -2.39 -0.01 2.11 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 1.84 6.83 -2.39 -0.02 1.82 16 25 H 0.09 3.88 5.41 -2.39 -0.01 3.87 16 26 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.67 6.03 -2.39 -0.01 2.65 16 29 H 0.05 2.01 4.19 -2.39 -0.01 2.00 16 30 H 0.01 0.29 4.58 -2.38 -0.01 0.28 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.06 2.04 8.05 -2.38 -0.02 2.02 16 33 H 0.08 2.12 6.73 -2.39 -0.02 2.10 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.40 7.99 8.80 -92.71 -0.82 7.18 16 Total: -1.00 -72.95 282.78 0.07 -72.89 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.20 Total: 20.74 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 3.89 Total: -10.15 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -5.86 Total: -104.42 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.04 Total: -23.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -72.95 0.07 -72.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685976714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.519 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds