Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 H 1.09000 * 109.47162 * 180.13298 * 3 2 1 5 5 C 1.50707 * 109.46977 * 300.12696 * 3 2 1 6 6 H 1.08000 * 119.99986 * 114.42737 * 5 3 2 7 7 C 1.37878 * 119.99746 * 294.42557 * 5 3 2 8 8 N 1.31515 * 120.00504 * 349.86581 * 7 5 3 9 9 Si 1.86804 * 119.99566 * 169.86753 * 7 5 3 10 10 H 1.48499 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47058 * 239.99701 * 9 7 5 12 12 H 1.48499 * 109.46988 * 120.00082 * 9 7 5 13 13 N 1.46891 * 109.47211 * 60.12661 * 3 2 1 14 14 C 1.46898 * 110.99997 * 101.17687 * 13 3 2 15 15 H 1.09003 * 109.63083 * 30.50566 * 14 13 3 16 16 C 1.53058 * 109.63334 * 270.11337 * 14 13 3 17 17 C 1.51792 * 110.74083 * 325.21120 * 16 14 13 18 18 C 1.51771 * 113.81514 * 293.19007 * 17 16 14 19 19 C 1.52991 * 110.88257 * 67.00190 * 18 17 16 20 20 N 1.47197 * 108.66335 * 273.53937 * 19 18 17 21 21 C 1.33372 * 120.42964 * 71.95806 * 20 19 18 22 22 O 1.21274 * 119.88846 * 179.70940 * 21 20 19 23 23 H 1.09001 * 109.47335 * 185.68878 * 1 2 3 24 24 H 1.09008 * 109.47279 * 305.68537 * 1 2 3 25 25 H 1.08999 * 109.47489 * 65.68490 * 1 2 3 26 26 H 1.08997 * 109.46558 * 240.00265 * 2 1 3 27 27 H 1.08993 * 109.46949 * 119.99668 * 2 1 3 28 28 H 0.97006 * 119.99470 * 2.28193 * 8 7 5 29 29 H 1.00897 * 111.00153 * 225.12852 * 13 3 2 30 30 H 1.08996 * 109.22643 * 85.53655 * 16 14 13 31 31 H 1.08997 * 109.22564 * 204.88620 * 16 14 13 32 32 H 1.08994 * 108.61738 * 54.31339 * 17 16 14 33 33 H 1.09004 * 108.61401 * 172.07331 * 17 16 14 34 34 H 1.08998 * 109.20052 * 187.36635 * 18 17 16 35 35 H 1.09011 * 109.19789 * 306.69332 * 18 17 16 36 36 H 1.09000 * 109.59805 * 33.28732 * 19 18 17 37 37 H 1.08993 * 109.60618 * 153.78084 * 19 18 17 38 38 H 0.97003 * 119.77877 * 251.95210 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0024 5 6 1.5350 2.1538 -1.2289 6 1 0.8422 2.9764 -1.1304 7 6 1.9576 1.7544 -2.4791 8 7 2.9449 0.8935 -2.5956 9 14 1.1276 2.4361 -4.0075 10 1 0.0527 3.3796 -3.6079 11 1 0.5398 1.3200 -4.7912 12 1 2.1301 3.1502 -4.8384 13 7 1.5528 2.1341 1.2009 14 6 2.6033 2.2147 2.2245 15 1 3.5804 2.2627 1.7436 16 6 2.5355 0.9819 3.1292 17 6 1.0976 0.5361 3.3233 18 6 0.2505 1.5225 4.1062 19 6 0.0494 2.8165 3.3152 20 7 1.1851 3.7138 3.5832 21 6 2.3900 3.4481 3.0767 22 8 3.3176 4.1968 3.2993 23 1 -0.3634 -1.0226 0.1019 24 1 -0.3634 0.5995 0.8348 25 1 -0.3634 0.4231 -0.9365 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3539 0.5143 -1.8019 29 1 1.2000 3.0512 0.9719 30 1 3.1043 0.1711 2.6741 31 1 2.9702 1.2240 4.0989 32 1 0.6437 0.3886 2.3434 33 1 1.0974 -0.4179 3.8507 34 1 -0.7212 1.0747 4.3139 35 1 0.7476 1.7530 5.0486 36 1 0.0052 2.5907 2.2498 37 1 -0.8777 3.2964 3.6286 38 1 1.0563 4.5034 4.1316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687773602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -42.440123 kcal Electronic energy + Delta-G solvation = -18848.418856 eV Core-core repulsion = 16111.357256 eV Total energy + Delta-G solvation = -2737.061600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18659 -37.08528 -35.64661 -33.51126 -32.25733 -31.09105 -29.19998 -26.12995 -24.58248 -23.87792 -23.31912 -20.41450 -19.56029 -19.02595 -17.19198 -16.98139 -16.27047 -15.10942 -14.47108 -14.33262 -13.79124 -13.77552 -13.44017 -13.13844 -12.96392 -12.87310 -12.27095 -12.18955 -11.52020 -11.44810 -11.16825 -10.84639 -10.76089 -10.43329 -10.24997 -10.16394 -10.12908 -9.99342 -9.79596 -9.37576 -8.83637 -8.68035 -8.26348 -7.56708 -6.42156 -4.13595 2.91952 3.40716 3.42953 3.56080 3.58586 4.46000 4.75902 4.90971 5.12020 5.15086 5.31855 5.32887 5.55572 5.62087 5.90969 5.99667 6.04456 6.22067 6.26230 6.31510 6.35179 6.37461 6.43933 6.51249 6.84477 6.89992 6.94407 7.06971 7.18071 7.44961 7.46310 7.50588 7.71503 7.86367 8.31220 8.47042 8.53419 8.79314 9.56985 10.95261 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.008155 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.880792 B = 3432.527347 C = 3717.477861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.200 3.800 4 H 0.005 0.995 5 C -0.606 4.606 6 H 0.053 0.947 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.661 5.661 14 C 0.071 3.929 15 H 0.074 0.926 16 C -0.098 4.098 17 C -0.124 4.124 18 C -0.127 4.127 19 C 0.087 3.913 20 N -0.718 5.718 21 C 0.519 3.481 22 O -0.563 6.563 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.272 0.728 29 H 0.338 0.662 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -0.187 10.839 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.092 3.908 4 H 0.023 0.977 5 C -0.644 4.644 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.542 5.542 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.295 5.295 14 C -0.043 4.043 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.161 4.161 18 C -0.165 4.165 19 C -0.037 4.037 20 N -0.370 5.370 21 C 0.305 3.695 22 O -0.441 6.441 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.684 -0.579 9.430 11.573 hybrid contribution 0.489 0.936 1.598 1.915 sum -6.195 0.356 11.028 12.654 Atomic orbital electron populations 1.21520 0.96750 0.97836 1.02008 1.21525 0.95983 0.98128 0.98662 1.19422 0.93380 0.91423 0.86587 0.97695 1.22104 1.31156 1.19087 0.92067 0.92860 1.25666 0.95077 0.95971 1.01176 1.70749 1.20446 1.29248 1.33736 0.83547 0.75615 0.75868 0.75211 1.21508 1.21288 1.21571 1.61017 1.32240 1.24014 1.12229 1.22079 0.96881 0.91938 0.93359 0.90794 1.21257 0.97829 0.96755 0.97834 1.21167 0.95107 0.96816 1.03035 1.21644 1.00084 0.96311 0.98485 1.22368 0.86860 0.89529 1.04915 1.45892 1.10079 1.28129 1.52853 1.20872 0.82151 0.86767 0.79666 1.90705 1.41905 1.50191 1.61328 0.96218 0.92726 0.92590 0.92560 0.95477 0.91689 0.84223 0.91410 0.93002 0.87796 0.93705 0.91520 0.92889 0.85727 0.91160 0.77350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.92 37.16 0.33 -2.03 16 2 C -0.10 -2.20 5.00 -26.73 -0.13 -2.34 16 3 C 0.20 4.50 2.02 -68.86 -0.14 4.36 16 4 H 0.01 0.14 6.44 -51.93 -0.33 -0.20 16 5 C -0.61 -15.42 7.33 -34.44 -0.25 -15.68 16 6 H 0.05 1.36 7.47 -52.49 -0.39 0.97 16 7 C 0.03 0.72 5.20 -17.82 -0.09 0.62 16 8 N -0.91 -25.91 13.06 55.43 0.72 -25.19 16 9 Si 1.07 24.30 29.92 -169.99 -5.09 19.22 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.66 -12.20 1.60 -101.76 -0.16 -12.36 16 14 C 0.07 1.26 2.78 -68.48 -0.19 1.07 16 15 H 0.07 1.51 7.24 -51.93 -0.38 1.14 16 16 C -0.10 -1.51 5.12 -27.31 -0.14 -1.65 16 17 C -0.12 -1.69 4.95 -27.97 -0.14 -1.83 16 18 C -0.13 -1.48 5.74 -27.36 -0.16 -1.63 16 19 C 0.09 1.04 6.37 -3.67 -0.02 1.02 16 20 N -0.72 -9.87 5.27 -59.90 -0.32 -10.19 16 21 C 0.52 9.19 6.43 -11.25 -0.07 9.12 16 22 O -0.56 -12.05 17.92 5.56 0.10 -11.95 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.95 5.91 -51.92 -0.31 0.65 16 25 H 0.06 1.18 7.42 -51.93 -0.39 0.79 16 26 H 0.06 1.35 6.49 -51.93 -0.34 1.01 16 27 H 0.03 0.52 6.48 -51.93 -0.34 0.19 16 28 H 0.27 7.74 6.08 -40.82 -0.25 7.50 16 29 H 0.34 6.52 6.60 -39.29 -0.26 6.26 16 30 H 0.07 1.07 7.72 -51.93 -0.40 0.66 16 31 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.10 1.58 3.11 -51.93 -0.16 1.42 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.62 8.05 -51.92 -0.42 0.20 16 36 H 0.13 1.74 4.59 -51.93 -0.24 1.51 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.73 8.91 -40.82 -0.36 4.37 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -28.97 281.86 -6.95 -35.93 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.45 Total: 9.27 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.01 Total: -8.97 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.25 Total: -47.74 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.10 Total: -11.95 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.97 -6.95 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.513 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds