Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 H 1.09000 * 109.47162 * 180.13298 * 3 2 1 5 5 C 1.50707 * 109.46977 * 300.12696 * 3 2 1 6 6 H 1.08000 * 119.99986 * 114.42737 * 5 3 2 7 7 C 1.37878 * 119.99746 * 294.42557 * 5 3 2 8 8 N 1.31515 * 120.00504 * 349.86581 * 7 5 3 9 9 Si 1.86804 * 119.99566 * 169.86753 * 7 5 3 10 10 H 1.48499 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47058 * 239.99701 * 9 7 5 12 12 H 1.48499 * 109.46988 * 120.00082 * 9 7 5 13 13 N 1.46891 * 109.47211 * 60.12661 * 3 2 1 14 14 C 1.46898 * 110.99997 * 101.17687 * 13 3 2 15 15 H 1.09003 * 109.63083 * 30.50566 * 14 13 3 16 16 C 1.53058 * 109.63334 * 270.11337 * 14 13 3 17 17 C 1.51792 * 110.74083 * 325.21120 * 16 14 13 18 18 C 1.51771 * 113.81514 * 293.19007 * 17 16 14 19 19 C 1.52991 * 110.88257 * 67.00190 * 18 17 16 20 20 N 1.47197 * 108.66335 * 273.53937 * 19 18 17 21 21 C 1.33372 * 120.42964 * 71.95806 * 20 19 18 22 22 O 1.21274 * 119.88846 * 179.70940 * 21 20 19 23 23 H 1.09001 * 109.47335 * 185.68878 * 1 2 3 24 24 H 1.09008 * 109.47279 * 305.68537 * 1 2 3 25 25 H 1.08999 * 109.47489 * 65.68490 * 1 2 3 26 26 H 1.08997 * 109.46558 * 240.00265 * 2 1 3 27 27 H 1.08993 * 109.46949 * 119.99668 * 2 1 3 28 28 H 0.97006 * 119.99470 * 2.28193 * 8 7 5 29 29 H 1.00897 * 111.00153 * 225.12852 * 13 3 2 30 30 H 1.08996 * 109.22643 * 85.53655 * 16 14 13 31 31 H 1.08997 * 109.22564 * 204.88620 * 16 14 13 32 32 H 1.08994 * 108.61738 * 54.31339 * 17 16 14 33 33 H 1.09004 * 108.61401 * 172.07331 * 17 16 14 34 34 H 1.08998 * 109.20052 * 187.36635 * 18 17 16 35 35 H 1.09011 * 109.19789 * 306.69332 * 18 17 16 36 36 H 1.09000 * 109.59805 * 33.28732 * 19 18 17 37 37 H 1.08993 * 109.60618 * 153.78084 * 19 18 17 38 38 H 0.97003 * 119.77877 * 251.95210 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0024 5 6 1.5350 2.1538 -1.2289 6 1 0.8422 2.9764 -1.1304 7 6 1.9576 1.7544 -2.4791 8 7 2.9449 0.8935 -2.5956 9 14 1.1276 2.4361 -4.0075 10 1 0.0527 3.3796 -3.6079 11 1 0.5398 1.3200 -4.7912 12 1 2.1301 3.1502 -4.8384 13 7 1.5528 2.1341 1.2009 14 6 2.6033 2.2147 2.2245 15 1 3.5804 2.2627 1.7436 16 6 2.5355 0.9819 3.1292 17 6 1.0976 0.5361 3.3233 18 6 0.2505 1.5225 4.1062 19 6 0.0494 2.8165 3.3152 20 7 1.1851 3.7138 3.5832 21 6 2.3900 3.4481 3.0767 22 8 3.3176 4.1968 3.2993 23 1 -0.3634 -1.0226 0.1019 24 1 -0.3634 0.5995 0.8348 25 1 -0.3634 0.4231 -0.9365 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3539 0.5143 -1.8019 29 1 1.2000 3.0512 0.9719 30 1 3.1043 0.1711 2.6741 31 1 2.9702 1.2240 4.0989 32 1 0.6437 0.3886 2.3434 33 1 1.0974 -0.4179 3.8507 34 1 -0.7212 1.0747 4.3139 35 1 0.7476 1.7530 5.0486 36 1 0.0052 2.5907 2.2498 37 1 -0.8777 3.2964 3.6286 38 1 1.0563 4.5034 4.1316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687773602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = -61.856537 kcal Electronic energy + Delta-G solvation = -18849.260814 eV Core-core repulsion = 16111.357256 eV Total energy + Delta-G solvation = -2737.903559 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56516 -38.65379 -37.11733 -34.99829 -33.71684 -32.83781 -30.55229 -27.75497 -26.14833 -25.47412 -24.71647 -21.75349 -21.14732 -20.42262 -18.95705 -18.31499 -17.71722 -16.53407 -15.93716 -15.88332 -15.55081 -15.30953 -14.76455 -14.66276 -14.37896 -14.33406 -13.65033 -13.59335 -13.17937 -12.96954 -12.64934 -12.61752 -12.11633 -11.92965 -11.91634 -11.64353 -11.56131 -11.43445 -11.20396 -10.91175 -10.60922 -10.29073 -10.04693 -9.20184 -8.55360 -6.26736 1.48777 1.55287 1.62161 1.77511 2.36331 2.58064 3.23156 3.29877 3.50962 3.96998 4.10195 4.15295 4.39458 4.46054 4.51858 4.63998 4.74893 4.79752 4.88617 4.94023 5.07582 5.19076 5.23511 5.30762 5.32166 5.36822 5.48871 5.64098 5.66945 5.83639 5.92486 5.96924 6.03141 6.23009 6.42405 6.52128 6.73556 7.20345 7.51848 8.81653 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.008155 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.880792 B = 3432.527347 C = 3717.477861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C 0.204 3.796 4 H -0.036 1.036 5 C -0.604 4.604 6 H 0.053 0.947 7 C -0.023 4.023 8 N -0.935 5.935 9 Si 1.110 2.890 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.291 1.291 13 N -0.632 5.632 14 C 0.070 3.930 15 H 0.037 0.963 16 C -0.094 4.094 17 C -0.123 4.123 18 C -0.122 4.122 19 C 0.083 3.917 20 N -0.698 5.698 21 C 0.519 3.481 22 O -0.607 6.607 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 -0.084 12.317 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.133 4.133 3 C 0.096 3.904 4 H -0.019 1.019 5 C -0.642 4.642 6 H 0.072 0.928 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.934 3.066 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.218 1.218 13 N -0.264 5.264 14 C -0.043 4.043 15 H 0.055 0.945 16 C -0.132 4.132 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.039 4.039 20 N -0.348 5.348 21 C 0.305 3.695 22 O -0.489 6.489 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.437 -0.478 10.947 14.461 hybrid contribution 1.333 0.917 1.210 2.021 sum -8.104 0.439 12.157 14.617 Atomic orbital electron populations 1.21427 0.94555 0.99545 1.01586 1.21361 0.97732 0.96466 0.97769 1.19260 0.90920 0.92836 0.87415 1.01852 1.22413 1.30123 1.18674 0.93026 0.92847 1.26914 0.95022 0.95871 1.04458 1.70859 1.22162 1.31134 1.33120 0.83008 0.75286 0.75841 0.72455 1.19300 1.20740 1.21778 1.61092 1.31585 1.23347 1.10424 1.22037 0.94765 0.93981 0.93515 0.94533 1.21236 0.99714 0.95022 0.97256 1.21164 0.93497 0.98383 1.02945 1.21627 1.01123 0.95375 0.97917 1.22538 0.87335 0.90004 1.04041 1.45819 1.09125 1.28510 1.51326 1.20720 0.82948 0.86077 0.79771 1.90687 1.43675 1.51375 1.63194 0.93954 0.90676 0.94872 0.95969 0.93801 0.93062 0.84656 0.92337 0.92238 0.89201 0.91995 0.88634 0.92460 0.87565 0.87269 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.92 71.98 0.64 -3.51 16 2 C -0.09 -4.01 5.00 30.60 0.15 -3.86 16 3 C 0.20 9.44 2.02 44.17 0.09 9.53 16 4 H -0.04 -1.96 6.44 -2.39 -0.02 -1.97 16 5 C -0.60 -31.12 7.33 25.60 0.19 -30.93 16 6 H 0.05 2.71 7.47 -2.91 -0.02 2.69 16 7 C -0.02 -1.26 5.20 84.65 0.44 -0.82 16 8 N -0.94 -55.27 13.06 21.45 0.28 -54.99 16 9 Si 1.11 48.93 29.92 68.60 2.05 50.98 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.63 -23.18 1.60 -475.87 -0.76 -23.95 16 14 C 0.07 2.55 2.78 44.42 0.12 2.67 16 15 H 0.04 1.60 7.24 -2.39 -0.02 1.58 16 16 C -0.09 -2.80 5.12 30.22 0.15 -2.65 16 17 C -0.12 -2.98 4.95 29.79 0.15 -2.83 16 18 C -0.12 -2.31 5.74 30.19 0.17 -2.14 16 19 C 0.08 1.67 6.37 86.24 0.55 2.22 16 20 N -0.70 -17.45 5.27 -462.60 -2.44 -19.89 16 21 C 0.52 18.10 6.43 88.11 0.57 18.66 16 22 O -0.61 -26.28 17.92 -3.01 -0.05 -26.33 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 2.41 5.91 -2.38 -0.01 2.40 16 25 H 0.03 1.34 7.42 -2.39 -0.02 1.32 16 26 H 0.02 1.08 6.49 -2.39 -0.02 1.06 16 27 H 0.04 1.69 6.48 -2.39 -0.02 1.67 16 28 H 0.26 15.55 6.08 -92.70 -0.56 14.98 16 29 H 0.33 12.72 6.60 -89.70 -0.59 12.13 16 30 H 0.06 1.84 7.72 -2.39 -0.02 1.82 16 31 H 0.06 1.69 7.86 -2.39 -0.02 1.67 16 32 H 0.09 2.46 3.11 -2.39 -0.01 2.46 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.09 8.05 -2.38 -0.02 1.07 16 36 H 0.11 2.63 4.59 -2.39 -0.01 2.62 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.40 8.60 8.91 -92.71 -0.83 7.77 16 Total: -1.00 -65.01 281.86 2.17 -62.83 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.13 Total: 24.99 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 3.23 Total: -13.65 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -2.92 Total: -98.82 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -65.01 2.17 -62.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.976 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds