Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 H 1.09003 * 109.46623 * 185.37248 * 3 2 1 5 5 N 1.46897 * 109.47424 * 65.37363 * 3 2 1 6 6 C 1.46897 * 111.00094 * 83.19335 * 5 3 2 7 7 C 1.50698 * 109.46843 * 305.36951 * 3 2 1 8 8 O 1.21280 * 120.00122 * 96.30274 * 7 3 2 9 9 N 1.34782 * 119.99974 * 276.29562 * 7 3 2 10 10 C 1.46501 * 119.99676 * 184.85411 * 9 7 3 11 11 C 1.53001 * 109.46744 * 184.87890 * 10 9 7 12 12 C 1.50703 * 115.55091 * 63.84309 * 11 10 9 13 13 H 1.08001 * 119.99530 * 266.50157 * 12 11 10 14 14 C 1.37870 * 119.99859 * 86.49953 * 12 11 10 15 15 N 1.31509 * 120.00475 * 2.49884 * 14 12 11 16 16 Si 1.86808 * 119.99813 * 182.49704 * 14 12 11 17 17 H 1.48494 * 109.46899 * 60.00090 * 16 14 12 18 18 H 1.48501 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47030 * 299.99952 * 16 14 12 20 20 C 1.53004 * 117.49807 * 278.17112 * 11 10 9 21 21 C 1.53001 * 117.49749 * 209.51145 * 11 10 9 22 22 H 1.08992 * 109.47236 * 303.92329 * 1 2 3 23 23 H 1.08998 * 109.46995 * 63.92251 * 1 2 3 24 24 H 1.09005 * 109.46915 * 183.92105 * 1 2 3 25 25 H 1.08999 * 109.47212 * 239.99505 * 2 1 3 26 26 H 1.09000 * 109.46905 * 119.99799 * 2 1 3 27 27 H 1.00899 * 110.99529 * 319.24292 * 5 3 2 28 28 H 1.08999 * 109.47687 * 295.23345 * 6 5 3 29 29 H 1.08994 * 109.46985 * 55.23859 * 6 5 3 30 30 H 1.09007 * 109.46544 * 175.23549 * 6 5 3 31 31 H 0.96994 * 120.00084 * 4.85725 * 9 7 3 32 32 H 1.08993 * 109.47197 * 304.87993 * 10 9 7 33 33 H 1.08999 * 109.46758 * 64.88145 * 10 9 7 34 34 H 0.96997 * 120.00591 * 185.01141 * 15 14 12 35 35 H 1.08996 * 117.50039 * 0.02562 * 20 11 10 36 36 H 1.09005 * 117.49640 * 145.02486 * 20 11 10 37 37 H 1.09002 * 117.49781 * 214.98296 * 21 11 10 38 38 H 1.09003 * 117.49781 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4439 -0.0962 5 7 1.6591 2.0966 1.2590 6 6 2.6174 1.7814 2.3268 7 6 1.4320 2.1902 -1.1586 8 8 0.4419 2.8699 -0.9892 9 7 1.9886 2.1036 -2.3831 10 6 1.4627 2.9125 -3.4855 11 6 2.1849 2.5392 -4.7816 12 6 1.9768 1.1244 -5.2573 13 1 2.6791 0.3525 -4.9793 14 6 0.8899 0.8156 -6.0473 15 7 0.0618 1.7643 -6.4265 16 14 0.5936 -0.9505 -6.5792 17 1 0.4190 -1.8063 -5.3784 18 1 -0.6316 -1.0165 -7.4159 19 1 1.7572 -1.4324 -7.3657 20 6 3.5521 3.1766 -5.0373 21 6 2.3334 3.6278 -5.8463 22 1 -0.3633 0.5735 0.8527 23 1 -0.3633 0.4517 -0.9230 24 1 -0.3633 -1.0253 0.0703 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.7206 1.8427 1.5288 28 1 2.5804 0.7141 2.5450 29 1 3.6227 2.0518 2.0042 30 1 2.3598 2.3447 3.2239 31 1 2.7372 1.5058 -2.5343 32 1 0.3950 2.7241 -3.5972 33 1 1.6247 3.9687 -3.2705 34 1 -0.7416 1.5379 -6.9206 35 1 3.9372 3.8616 -4.2820 36 1 4.3009 2.5728 -5.5500 37 1 2.2810 3.3207 -6.8909 38 1 1.9162 4.6099 -5.6236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691951776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -20.954988 kcal Electronic energy + Delta-G solvation = -17855.550739 eV Core-core repulsion = 15119.420805 eV Total energy + Delta-G solvation = -2736.129935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47433 -36.99489 -35.99657 -33.21572 -32.07693 -31.92223 -27.87661 -26.02411 -25.10632 -24.24406 -21.77529 -21.08771 -19.50744 -19.03482 -17.02461 -16.16992 -15.51034 -15.44386 -14.80341 -14.57199 -14.06449 -13.75655 -13.61099 -13.22024 -12.96472 -12.65585 -12.43310 -12.04304 -11.76533 -11.52198 -11.42042 -11.10033 -10.95441 -10.91979 -10.85473 -10.55000 -10.22675 -9.56260 -9.20676 -9.05191 -8.45326 -8.36990 -8.22469 -7.98381 -6.06899 -4.15987 3.26572 3.29251 3.32855 3.33634 3.74596 4.35740 4.49543 4.91738 4.98918 5.10597 5.21779 5.31344 5.34337 5.39632 5.53624 5.62724 5.76514 5.80359 5.98826 6.06252 6.11881 6.35862 6.40625 6.50085 6.57728 6.71853 6.86177 6.96130 7.13742 7.35637 7.38124 7.44283 7.56049 7.81185 8.34884 8.38597 8.84791 8.99971 9.50929 11.01145 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.007175 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.705211 B = 3901.587869 C = 4554.598346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.068 3.932 4 H 0.095 0.905 5 N -0.674 5.674 6 C 0.028 3.972 7 C 0.516 3.484 8 O -0.543 6.543 9 N -0.706 5.706 10 C 0.166 3.834 11 C 0.024 3.976 12 C -0.497 4.497 13 H 0.058 0.942 14 C 0.074 3.926 15 N -0.875 5.875 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.213 4.213 21 C -0.142 4.142 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.350 0.650 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -2.920 11.851 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C -0.045 4.045 4 H 0.113 0.887 5 N -0.306 5.306 6 C -0.121 4.121 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.355 5.355 10 C 0.042 3.958 11 C 0.023 3.977 12 C -0.535 4.535 13 H 0.076 0.924 14 C -0.130 4.130 15 N -0.511 5.511 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.250 4.250 21 C -0.180 4.180 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.171 0.829 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.290 -1.746 11.634 12.522 hybrid contribution -0.107 -2.181 -0.275 2.201 sum 4.184 -3.927 11.359 12.726 Atomic orbital electron populations 1.21791 0.94893 1.01446 1.03073 1.22093 0.97564 0.96051 1.03044 1.21590 1.00383 0.92099 0.90461 0.88730 1.60154 1.06546 1.61816 1.02116 1.22244 0.96855 0.98442 0.94591 1.20218 0.84277 0.81840 0.83661 1.90634 1.25372 1.41679 1.84302 1.45935 1.35947 1.44710 1.08936 1.20945 0.99108 0.91008 0.84697 1.19054 0.92375 0.94274 0.91979 1.20291 1.10195 0.91837 1.31146 0.92363 1.24965 0.96357 0.96805 0.94883 1.69979 1.11962 1.31609 1.37566 0.86730 0.77651 0.85337 0.78695 1.20267 1.21261 1.20231 1.23039 0.92825 1.04904 1.04232 1.22456 0.99922 0.97568 0.98050 0.92737 0.91404 0.92628 0.90393 0.91509 0.82919 0.96072 0.91711 0.91330 0.76929 0.91244 0.94741 0.92831 0.91704 0.90436 0.89532 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.26 37.16 0.34 -1.78 16 2 C -0.15 -1.85 5.79 -26.73 -0.15 -2.01 16 3 C 0.07 0.96 2.74 -68.87 -0.19 0.78 16 4 H 0.09 1.17 7.75 -51.93 -0.40 0.77 16 5 N -0.67 -9.11 6.20 -115.25 -0.71 -9.82 16 6 C 0.03 0.28 10.52 60.06 0.63 0.92 16 7 C 0.52 9.69 5.80 -10.98 -0.06 9.62 16 8 O -0.54 -12.20 16.13 5.56 0.09 -12.11 16 9 N -0.71 -13.67 5.44 -60.30 -0.33 -13.99 16 10 C 0.17 3.77 5.53 -4.04 -0.02 3.75 16 11 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 12 C -0.50 -12.75 8.67 -34.44 -0.30 -13.05 16 13 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 14 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16 15 N -0.88 -24.38 12.62 55.43 0.70 -23.68 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 21 C -0.14 -3.27 9.11 -26.69 -0.24 -3.52 16 22 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 23 H 0.07 1.16 7.01 -51.93 -0.36 0.80 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.69 7.30 -51.93 -0.38 0.31 16 27 H 0.35 4.68 6.64 -39.29 -0.26 4.41 16 28 H 0.02 0.18 7.35 -51.93 -0.38 -0.20 16 29 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.40 6.96 8.42 -40.82 -0.34 6.62 16 32 H 0.07 1.82 8.10 -51.93 -0.42 1.40 16 33 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -29.46 313.61 -7.35 -36.81 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.22 Total: 10.32 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.59 Total: -7.80 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.34 Total: -47.49 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.46 -7.35 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691951776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.858 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds