Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 H 1.09003 * 109.46623 * 185.37248 * 3 2 1 5 5 N 1.46897 * 109.47424 * 65.37363 * 3 2 1 6 6 C 1.46897 * 111.00094 * 83.19335 * 5 3 2 7 7 C 1.50698 * 109.46843 * 305.36951 * 3 2 1 8 8 O 1.21280 * 120.00122 * 96.30274 * 7 3 2 9 9 N 1.34782 * 119.99974 * 276.29562 * 7 3 2 10 10 C 1.46501 * 119.99676 * 184.85411 * 9 7 3 11 11 C 1.53001 * 109.46744 * 184.87890 * 10 9 7 12 12 C 1.50703 * 115.55091 * 63.84309 * 11 10 9 13 13 H 1.08001 * 119.99530 * 266.50157 * 12 11 10 14 14 C 1.37870 * 119.99859 * 86.49953 * 12 11 10 15 15 N 1.31509 * 120.00475 * 2.49884 * 14 12 11 16 16 Si 1.86808 * 119.99813 * 182.49704 * 14 12 11 17 17 H 1.48494 * 109.46899 * 60.00090 * 16 14 12 18 18 H 1.48501 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47030 * 299.99952 * 16 14 12 20 20 C 1.53004 * 117.49807 * 278.17112 * 11 10 9 21 21 C 1.53001 * 117.49749 * 209.51145 * 11 10 9 22 22 H 1.08992 * 109.47236 * 303.92329 * 1 2 3 23 23 H 1.08998 * 109.46995 * 63.92251 * 1 2 3 24 24 H 1.09005 * 109.46915 * 183.92105 * 1 2 3 25 25 H 1.08999 * 109.47212 * 239.99505 * 2 1 3 26 26 H 1.09000 * 109.46905 * 119.99799 * 2 1 3 27 27 H 1.00899 * 110.99529 * 319.24292 * 5 3 2 28 28 H 1.08999 * 109.47687 * 295.23345 * 6 5 3 29 29 H 1.08994 * 109.46985 * 55.23859 * 6 5 3 30 30 H 1.09007 * 109.46544 * 175.23549 * 6 5 3 31 31 H 0.96994 * 120.00084 * 4.85725 * 9 7 3 32 32 H 1.08993 * 109.47197 * 304.87993 * 10 9 7 33 33 H 1.08999 * 109.46758 * 64.88145 * 10 9 7 34 34 H 0.96997 * 120.00591 * 185.01141 * 15 14 12 35 35 H 1.08996 * 117.50039 * 0.02562 * 20 11 10 36 36 H 1.09005 * 117.49640 * 145.02486 * 20 11 10 37 37 H 1.09002 * 117.49781 * 214.98296 * 21 11 10 38 38 H 1.09003 * 117.49781 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4439 -0.0962 5 7 1.6591 2.0966 1.2590 6 6 2.6174 1.7814 2.3268 7 6 1.4320 2.1902 -1.1586 8 8 0.4419 2.8699 -0.9892 9 7 1.9886 2.1036 -2.3831 10 6 1.4627 2.9125 -3.4855 11 6 2.1849 2.5392 -4.7816 12 6 1.9768 1.1244 -5.2573 13 1 2.6791 0.3525 -4.9793 14 6 0.8899 0.8156 -6.0473 15 7 0.0618 1.7643 -6.4265 16 14 0.5936 -0.9505 -6.5792 17 1 0.4190 -1.8063 -5.3784 18 1 -0.6316 -1.0165 -7.4159 19 1 1.7572 -1.4324 -7.3657 20 6 3.5521 3.1766 -5.0373 21 6 2.3334 3.6278 -5.8463 22 1 -0.3633 0.5735 0.8527 23 1 -0.3633 0.4517 -0.9230 24 1 -0.3633 -1.0253 0.0703 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.7206 1.8427 1.5288 28 1 2.5804 0.7141 2.5450 29 1 3.6227 2.0518 2.0042 30 1 2.3598 2.3447 3.2239 31 1 2.7372 1.5058 -2.5343 32 1 0.3950 2.7241 -3.5972 33 1 1.6247 3.9687 -3.2705 34 1 -0.7416 1.5379 -6.9206 35 1 3.9372 3.8616 -4.2820 36 1 4.3009 2.5728 -5.5500 37 1 2.2810 3.3207 -6.8909 38 1 1.9162 4.6099 -5.6236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691951776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -41.753522 kcal Electronic energy + Delta-G solvation = -17856.452631 eV Core-core repulsion = 15119.420805 eV Total energy + Delta-G solvation = -2737.031827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91200 -38.65151 -37.33441 -34.87912 -33.94159 -33.06047 -29.21690 -27.74620 -26.77317 -25.24913 -23.13639 -22.76738 -21.28386 -20.53163 -18.47977 -17.84059 -16.91595 -16.80852 -16.50917 -16.10104 -15.61429 -15.27708 -14.89711 -14.44366 -14.22242 -14.11468 -13.66013 -13.55558 -13.35679 -12.94997 -12.88812 -12.79052 -12.48852 -12.39851 -12.16693 -12.01167 -11.89165 -11.40080 -10.96494 -10.72772 -10.39805 -10.02951 -9.76519 -9.31438 -8.09339 -6.22634 1.42989 1.43482 1.50239 1.83993 2.33899 2.43578 3.19577 3.40194 3.54303 3.83195 3.93326 4.01658 4.25049 4.32709 4.51875 4.56341 4.56875 4.67024 4.67757 4.73998 4.81362 4.95420 5.01228 5.04715 5.08566 5.10048 5.29115 5.30398 5.59845 5.64379 5.73551 5.78906 5.98484 6.37307 6.40395 6.83911 6.88854 7.46734 7.50785 8.98381 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.007175 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.705211 B = 3901.587869 C = 4554.598346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.079 3.921 4 H 0.120 0.880 5 N -0.694 5.694 6 C 0.029 3.971 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.182 3.818 11 C 0.002 3.998 12 C -0.500 4.500 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.293 1.293 19 H -0.268 1.268 20 C -0.176 4.176 21 C -0.155 4.155 22 H 0.060 0.940 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.348 0.652 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.408 0.592 32 H 0.023 0.977 33 H 0.033 0.967 34 H 0.258 0.742 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -4.364 13.512 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C -0.035 4.035 4 H 0.137 0.863 5 N -0.327 5.327 6 C -0.120 4.120 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.352 5.352 10 C 0.058 3.942 11 C 0.001 3.999 12 C -0.538 4.538 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.773 3.227 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.193 1.193 20 C -0.213 4.213 21 C -0.194 4.194 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.168 0.832 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.244 0.756 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.341 -3.216 13.314 15.094 hybrid contribution -0.733 -1.684 -0.750 1.984 sum 5.607 -4.900 12.564 14.605 Atomic orbital electron populations 1.21772 0.96214 1.02133 1.01010 1.22091 0.96283 0.95078 1.04605 1.21529 1.01209 0.92020 0.88699 0.86261 1.60113 1.07320 1.62477 1.02795 1.22327 0.96145 0.99823 0.93692 1.21219 0.83514 0.81196 0.84393 1.90609 1.27352 1.43650 1.84965 1.45841 1.36207 1.44609 1.08532 1.20488 0.96469 0.91453 0.85827 1.19090 0.94888 0.93676 0.92236 1.20632 1.09867 0.93022 1.30265 0.91755 1.25700 0.96470 1.00216 0.95337 1.70115 1.12427 1.33391 1.38809 0.85791 0.77389 0.81208 0.78328 1.19653 1.21864 1.19279 1.23024 0.91418 1.03735 1.03159 1.22374 1.02345 0.97729 0.96915 0.92144 0.95744 0.90926 0.90507 0.88113 0.83168 0.94218 0.91085 0.90388 0.75625 0.95842 0.94879 0.93340 0.89189 0.89594 0.91823 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.26 71.98 0.67 -3.40 16 2 C -0.14 -3.15 5.79 30.60 0.18 -2.97 16 3 C 0.08 2.05 2.74 44.17 0.12 2.17 16 4 H 0.12 2.52 7.75 -2.39 -0.02 2.50 16 5 N -0.69 -17.23 6.20 -518.54 -3.22 -20.44 16 6 C 0.03 0.47 10.52 127.69 1.34 1.82 16 7 C 0.51 18.98 5.80 87.66 0.51 19.49 16 8 O -0.59 -26.97 16.13 -3.03 -0.05 -27.02 16 9 N -0.70 -26.87 5.44 -463.06 -2.52 -29.39 16 10 C 0.18 8.45 5.53 86.38 0.48 8.93 16 11 C 0.00 0.09 1.47 -52.92 -0.08 0.01 16 12 C -0.50 -25.54 8.67 25.60 0.22 -25.31 16 13 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 14 C 0.02 1.23 5.42 84.65 0.46 1.69 16 15 N -0.91 -52.12 12.62 21.44 0.27 -51.85 16 16 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C -0.18 -7.01 9.96 30.62 0.30 -6.70 16 21 C -0.16 -7.21 9.11 30.62 0.28 -6.93 16 22 H 0.06 1.50 6.32 -2.39 -0.02 1.48 16 23 H 0.02 0.84 7.01 -2.39 -0.02 0.82 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.10 1.63 7.30 -2.39 -0.02 1.62 16 27 H 0.35 8.74 6.64 -89.69 -0.60 8.14 16 28 H 0.04 0.52 7.35 -2.39 -0.02 0.50 16 29 H 0.07 1.09 7.94 -2.39 -0.02 1.07 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.41 13.67 8.42 -92.71 -0.78 12.89 16 32 H 0.02 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.03 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 37 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -65.09 313.61 0.67 -64.43 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.33 Total: 31.13 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.48 Total: -11.22 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.46 Total: -101.68 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.09 0.67 -64.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691951776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.674 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds